RNA–Protein interactions for RNA: ENST00000404210.5

LINC00339-201, long intergenic non-protein coding RNA 339, humanhuman

BASIC

Gene LINC00339, Length 1,189 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-201ENST00000404210 KRTAP25-1Q3LHN0 102 aa4.76□□□□□ -1.65
LINC00339-201ENST00000404210 KRTAP8-1Q8IUC2 63 aa4.76□□□□□ -1.65
LINC00339-201ENST00000404210 KMT2DO14686 5537 aa4.73□□□□□ -1.65
LINC00339-201ENST00000404210 KRTAP5-9P26371 169 aa4.71□□□□□ -1.66
LINC00339-201ENST00000404210 SYNE2Q8WXH0 6885 aaKnown RBP4.68□□□□□ -1.66
LINC00339-201ENST00000404210 LCE3AQ5TA76 89 aa4.66□□□□□ -1.66
LINC00339-201ENST00000404210 SPRR2FQ96RM1 72 aa4.64□□□□□ -1.67
LINC00339-201ENST00000404210 PMAIP1Q13794 54 aa4.61□□□□□ -1.67
LINC00339-201ENST00000404210 PRO0628Q9UI54 55 aa4.61□□□□□ -1.67
LINC00339-201ENST00000404210 KRTAP19-7Q3SYF9 63 aa4.59□□□□□ -1.67
LINC00339-201ENST00000404210 KRTAP19-5Q3LI72 72 aa4.58□□□□□ -1.68
LINC00339-201ENST00000404210 NDUFAF8A1L188 74 aa4.56□□□□□ -1.68
LINC00339-201ENST00000404210 PP632Q6XCG6 107 aa4.54□□□□□ -1.68
LINC00339-201ENST00000404210 MT1EP04732 61 aa4.53□□□□□ -1.68
LINC00339-201ENST00000404210 KRTAP12-3P60328 96 aa4.49□□□□□ -1.69
LINC00339-201ENST00000404210 MUC12Q9UKN1 5478 aa4.49□□□□□ -1.69
LINC00339-201ENST00000404210 SPRR2EP22531 72 aa4.48□□□□□ -1.69
LINC00339-201ENST00000404210 SPRR2BP35325 72 aa4.48□□□□□ -1.69
LINC00339-201ENST00000404210 SPRR2AP35326 72 aa4.48□□□□□ -1.69
LINC00339-201ENST00000404210 LCE1AQ5T7P2 110 aa4.48□□□□□ -1.69
LINC00339-201ENST00000404210 KRTAP19-3Q7Z4W3 81 aa4.42□□□□□ -1.7
LINC00339-201ENST00000404210 MT1LQ93083 61 aa4.4□□□□□ -1.71
LINC00339-201ENST00000404210 MT1GP13640 62 aa4.39□□□□□ -1.71
LINC00339-201ENST00000404210 MDN1Q9NU22 5596 aa4.38□□□□□ -1.71
LINC00339-201ENST00000404210 NEBP20929 6669 aa4.34□□□□□ -1.71
LINC00339-201ENST00000404210 SPRR2DP22532 72 aa4.33□□□□□ -1.72
LINC00339-201ENST00000404210 KTN1-AS1Q86SY8 53 aa4.31□□□□□ -1.72
LINC00339-201ENST00000404210 MT1MQ8N339 61 aa4.29□□□□□ -1.72
LINC00339-201ENST00000404210 KRTAP2-3P0C7H8 128 aa4.24□□□□□ -1.73
LINC00339-201ENST00000404210 KRTAP2-4Q9BYR9 128 aa4.24□□□□□ -1.73
LINC00339-201ENST00000404210 KRTAP20-1Q3LI63 56 aa4.22□□□□□ -1.73
LINC00339-201ENST00000404210 KRTAP5-6Q6L8G9 129 aaPredicted RBP4.21□□□□□ -1.74
LINC00339-201ENST00000404210 LCE3CQ5T5A8 94 aa4.19□□□□□ -1.74
LINC00339-201ENST00000404210 KRTAP4-3Q9BYR4 195 aa4.16□□□□□ -1.74
LINC00339-201ENST00000404210 MT3P25713 68 aa4.14□□□□□ -1.75
LINC00339-201ENST00000404210 KRTAP2-2Q9BYT5 123 aa4.14□□□□□ -1.75
LINC00339-201ENST00000404210 KRTAP2-1Q9BYU5 128 aa4.14□□□□□ -1.75
LINC00339-201ENST00000404210 KRTAP5-11Q6L8G4 156 aa4.12□□□□□ -1.75
LINC00339-201ENST00000404210 DSTQ03001 7570 aaKnown RBP4.04□□□□□ -1.76
LINC00339-201ENST00000404210 LUZP6Q538Z0 58 aa4.02□□□□□ -1.77
LINC00339-201ENST00000404210 LCE1EQ5T753 118 aa3.96□□□□□ -1.78
LINC00339-201ENST00000404210 KRTAP9-6A8MVA2 160 aa3.92□□□□□ -1.78
LINC00339-201ENST00000404210 KRTAP5-5Q701N2 237 aaPredicted RBP3.9□□□□□ -1.79
LINC00339-201ENST00000404210 SPRR5A0A1B0GTR4 108 aa3.89□□□□□ -1.79
LINC00339-201ENST00000404210 KRTAP5-4Q6L8H1 288 aa3.88□□□□□ -1.79
LINC00339-201ENST00000404210 LCE1FQ5T754 118 aa3.87□□□□□ -1.79
LINC00339-201ENST00000404210 MT1AP04731 61 aa3.76□□□□□ -1.81
LINC00339-201ENST00000404210 MT4P47944 62 aa3.74□□□□□ -1.81
LINC00339-201ENST00000404210 KRTAP12-4P60329 112 aa3.71□□□□□ -1.82
LINC00339-201ENST00000404210 KRTAP6-1Q3LI64 71 aa3.7□□□□□ -1.82
LINC00339-201ENST00000404210 KRTAP5-1Q6L8H4 278 aa3.65□□□□□ -1.83
LINC00339-201ENST00000404210 SYNE1Q8NF91 8797 aaKnown RBP3.64□□□□□ -1.83
LINC00339-201ENST00000404210 KRTAP20-2Q3LI61 65 aa3.62□□□□□ -1.83
LINC00339-201ENST00000404210 HMCN1Q96RW7 5635 aa3.55□□□□□ -1.84
LINC00339-201ENST00000404210 KRTAP4-4Q9BYR3 166 aa3.49□□□□□ -1.85
LINC00339-201ENST00000404210 KRTAP5-2Q701N4 177 aa3.46□□□□□ -1.86
LINC00339-201ENST00000404210 KRTAP6-2Q3LI66 62 aa3.45□□□□□ -1.86
LINC00339-201ENST00000404210 AHNAK2Q8IVF2 5795 aa3.29□□□□□ -1.88
LINC00339-201ENST00000404210 KRTAP5-10Q6L8G5 202 aa3.28□□□□□ -1.88
LINC00339-201ENST00000404210 GPR98Q8WXG9 6306 aa3.25□□□□□ -1.89
LINC00339-201ENST00000404210 LCE3EQ5T5B0 92 aa3.24□□□□□ -1.89
LINC00339-201ENST00000404210 KRTAP5-7Q6L8G8 165 aa3.11□□□□□ -1.91
LINC00339-201ENST00000404210 KRTAP5-8O75690 187 aa3.1□□□□□ -1.91
LINC00339-201ENST00000404210 LCE3DQ9BYE3 92 aa3.1□□□□□ -1.91
LINC00339-201ENST00000404210 OBSCNQ5VST9 7968 aa3.09□□□□□ -1.91
LINC00339-201ENST00000404210 MUC5ACP98088 5654 aa2.86□□□□□ -1.95
LINC00339-201ENST00000404210 LCE1CQ5T751 118 aa2.84□□□□□ -1.95
LINC00339-201ENST00000404210 LCE1BQ5T7P3 118 aa2.84□□□□□ -1.95
LINC00339-201ENST00000404210 INE1O15225 51 aa2.74□□□□□ -1.97
LINC00339-201ENST00000404210 MUC5BQ9HC84 5762 aaPredicted RBP2.64□□□□□ -1.99
LINC00339-201ENST00000404210 AHNAKQ09666 5890 aaKnown RBP2.57□□□□□ -2
LINC00339-201ENST00000404210 PRM1P04553 51 aa2.44□□□□□ -2.02
LINC00339-201ENST00000404210 KRTAP21-2Q3LI59 83 aa2.44□□□□□ -2.02
LINC00339-201ENST00000404210 PHGR1C9JFL3 82 aa2.16□□□□□ -2.06
LINC00339-201ENST00000404210 MUC19Q7Z5P9 8384 aa2.07□□□□□ -2.08
LINC00339-201ENST00000404210 KRTAP21-1Q3LI58 79 aa1.45□□□□□ -2.18
LINC00339-201ENST00000404210 MUC16Q8WXI7 14507 aa1.39□□□□□ -2.19
Retrieved 77 of 20,778 RNA–protein pairs in 87.2 ms