RNA–Protein interactions for RNA: ENST00000403076.5

SDC1-203, Transcript of syndecan 1, humanhuman

TSL 1 (best) BASIC

Gene SDC1, Length 1,523 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-203ENST00000403076 SPRR2EP22531 72 aa6.55□□□□□ -1.36
SDC1-203ENST00000403076 SPRR2BP35325 72 aa6.55□□□□□ -1.36
SDC1-203ENST00000403076 SPRR2AP35326 72 aa6.55□□□□□ -1.36
SDC1-203ENST00000403076 KRTAP20-1Q3LI63 56 aa6.51□□□□□ -1.37
SDC1-203ENST00000403076 LCE1AQ5T7P2 110 aa6.5□□□□□ -1.37
SDC1-203ENST00000403076 KRTAP19-3Q7Z4W3 81 aa6.45□□□□□ -1.38
SDC1-203ENST00000403076 MT1LQ93083 61 aa6.45□□□□□ -1.38
SDC1-203ENST00000403076 KRTAP15-1Q3LI76 137 aa6.43□□□□□ -1.38
SDC1-203ENST00000403076 MT1GP13640 62 aa6.38□□□□□ -1.39
SDC1-203ENST00000403076 LCE5AQ5TCM9 118 aa6.36□□□□□ -1.39
SDC1-203ENST00000403076 SPRR2DP22532 72 aa6.32□□□□□ -1.4
SDC1-203ENST00000403076 KRTAP19-4Q3LI73 84 aa6.31□□□□□ -1.4
SDC1-203ENST00000403076 KRTAP2-3P0C7H8 128 aa6.29□□□□□ -1.4
SDC1-203ENST00000403076 KRTAP2-4Q9BYR9 128 aa6.29□□□□□ -1.4
SDC1-203ENST00000403076 MT1MQ8N339 61 aa6.28□□□□□ -1.4
SDC1-203ENST00000403076 H3BS24 57 aa6.2□□□□□ -1.42
SDC1-203ENST00000403076 KRTAP4-7Q9BYR0 210 aa6.2□□□□□ -1.42
SDC1-203ENST00000403076 LCE3CQ5T5A8 94 aa6.18□□□□□ -1.42
SDC1-203ENST00000403076 KRTAP4-3Q9BYR4 195 aa6.13□□□□□ -1.43
SDC1-203ENST00000403076 LCE3BQ5TA77 95 aa6.09□□□□□ -1.44
SDC1-203ENST00000403076 KRTAP2-2Q9BYT5 123 aa6.08□□□□□ -1.44
SDC1-203ENST00000403076 KRTAP2-1Q9BYU5 128 aa6.08□□□□□ -1.44
SDC1-203ENST00000403076 NDUFAF8A1L188 74 aa5.97□□□□□ -1.45
SDC1-203ENST00000403076 DSTQ03001 7570 aaKnown RBP5.92□□□□□ -1.46
SDC1-203ENST00000403076 SPRR5A0A1B0GTR4 108 aa5.84□□□□□ -1.47
SDC1-203ENST00000403076 LOC100996750A0A140TA64 210 aa5.84□□□□□ -1.48
SDC1-203ENST00000403076 KRTAP9-6A8MVA2 160 aa5.79□□□□□ -1.48
SDC1-203ENST00000403076 LUZP6Q538Z0 58 aa5.75□□□□□ -1.49
SDC1-203ENST00000403076 GPR98Q8WXG9 6306 aa5.66□□□□□ -1.5
SDC1-203ENST00000403076 KRTAP5-5Q701N2 237 aaPredicted RBP5.65□□□□□ -1.5
SDC1-203ENST00000403076 LCE4AQ5TA78 99 aa5.6□□□□□ -1.51
SDC1-203ENST00000403076 KRTAP5-4Q6L8H1 288 aa5.57□□□□□ -1.52
SDC1-203ENST00000403076 KRTAP4-9Q9BYQ8 210 aa5.57□□□□□ -1.52
SDC1-203ENST00000403076 MT1AP04731 61 aa5.5□□□□□ -1.53
SDC1-203ENST00000403076 MT4P47944 62 aa5.49□□□□□ -1.53
SDC1-203ENST00000403076 A0A0A0MQY5 61 aa5.47□□□□□ -1.53
SDC1-203ENST00000403076 KRTAP6-1Q3LI64 71 aa5.43□□□□□ -1.54
SDC1-203ENST00000403076 LCE1DQ5T752 114 aa5.43□□□□□ -1.54
SDC1-203ENST00000403076 KRTAP12-4P60329 112 aa5.42□□□□□ -1.54
SDC1-203ENST00000403076 KRTAP4-6Q9BYQ5 205 aa5.38□□□□□ -1.55
SDC1-203ENST00000403076 HMCN1Q96RW7 5635 aa5.37□□□□□ -1.55
SDC1-203ENST00000403076 SYNE1Q8NF91 8797 aaKnown RBP5.35□□□□□ -1.55
SDC1-203ENST00000403076 KRTAP20-2Q3LI61 65 aa5.25□□□□□ -1.57
SDC1-203ENST00000403076 KRTAP9-4Q9BYQ2 154 aa5.24□□□□□ -1.57
SDC1-203ENST00000403076 AHNAK2Q8IVF2 5795 aa5.23□□□□□ -1.57
SDC1-203ENST00000403076 KRTAP5-10Q6L8G5 202 aa5.13□□□□□ -1.59
SDC1-203ENST00000403076 KRTAP6-2Q3LI66 62 aa5.07□□□□□ -1.6
SDC1-203ENST00000403076 INE1O15225 51 aa5.05□□□□□ -1.6
SDC1-203ENST00000403076 KRTAP5-3Q6L8H2 238 aa5.04□□□□□ -1.6
SDC1-203ENST00000403076 MT3P25713 68 aa5.02□□□□□ -1.61
SDC1-203ENST00000403076 KRTAP5-2Q701N4 177 aa4.98□□□□□ -1.61
SDC1-203ENST00000403076 KRTAP5-7Q6L8G8 165 aa4.95□□□□□ -1.62
SDC1-203ENST00000403076 KRTAP4-12Q9BQ66 201 aa4.91□□□□□ -1.62
SDC1-203ENST00000403076 KRTAP9-9Q9BYP9 154 aa4.69□□□□□ -1.66
SDC1-203ENST00000403076 KRTAP4-11Q9BYQ6 195 aa4.64□□□□□ -1.67
SDC1-203ENST00000403076 LCE3DQ9BYE3 92 aa4.6□□□□□ -1.67
SDC1-203ENST00000403076 OBSCNQ5VST9 7968 aa4.57□□□□□ -1.68
SDC1-203ENST00000403076 KRTAP5-8O75690 187 aa4.46□□□□□ -1.7
SDC1-203ENST00000403076 LCE3EQ5T5B0 92 aa4.44□□□□□ -1.7
SDC1-203ENST00000403076 LCE1EQ5T753 118 aa4.41□□□□□ -1.7
SDC1-203ENST00000403076 KRTAP5-1Q6L8H4 278 aa4.36□□□□□ -1.71
SDC1-203ENST00000403076 MUC5BQ9HC84 5762 aaPredicted RBP4.36□□□□□ -1.71
SDC1-203ENST00000403076 AHNAKQ09666 5890 aaKnown RBP4.36□□□□□ -1.71
SDC1-203ENST00000403076 MUC5ACP98088 5654 aa4.35□□□□□ -1.71
SDC1-203ENST00000403076 KRTAP4-2Q9BYR5 136 aa4.21□□□□□ -1.74
SDC1-203ENST00000403076 LCE1BQ5T7P3 118 aa4.19□□□□□ -1.74
SDC1-203ENST00000403076 LCE1CQ5T751 118 aa4.1□□□□□ -1.75
SDC1-203ENST00000403076 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.82□□□□□ -1.8
SDC1-203ENST00000403076 PRM1P04553 51 aa3.7□□□□□ -1.82
SDC1-203ENST00000403076 KRTAP5-11Q6L8G4 156 aa3.65□□□□□ -1.82
SDC1-203ENST00000403076 KRTAP21-2Q3LI59 83 aa3.55□□□□□ -1.84
SDC1-203ENST00000403076 LCE1FQ5T754 118 aa3.4□□□□□ -1.86
SDC1-203ENST00000403076 KRTAP4-4Q9BYR3 166 aa3.22□□□□□ -1.89
SDC1-203ENST00000403076 PHGR1C9JFL3 82 aa3.13□□□□□ -1.91
SDC1-203ENST00000403076 MUC19Q7Z5P9 8384 aa2.76□□□□□ -1.97
SDC1-203ENST00000403076 KRTAP21-1Q3LI58 79 aa2.34□□□□□ -2.03
SDC1-203ENST00000403076 MUC16Q8WXI7 14507 aa2.03□□□□□ -2.09
Retrieved 77 of 20,778 RNA–protein pairs in 81.7 ms