RNA–Protein interactions for RNA: ENST00000394269.7

TCOF1-203, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene TCOF1, Length 3,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-203ENST00000394269 SPRR2FQ96RM1 72 aa4.03□□□□□ -1.76
TCOF1-203ENST00000394269 KRTAP19-6Q3LI70 58 aa4.02□□□□□ -1.77
TCOF1-203ENST00000394269 KRTAP4-7Q9BYR0 210 aa4.02□□□□□ -1.77
TCOF1-203ENST00000394269 KRTAP19-7Q3SYF9 63 aa4.02□□□□□ -1.77
TCOF1-203ENST00000394269 LCE3CQ5T5A8 94 aa4□□□□□ -1.77
TCOF1-203ENST00000394269 MT1EP04732 61 aa3.92□□□□□ -1.78
TCOF1-203ENST00000394269 MT1LQ93083 61 aa3.89□□□□□ -1.79
TCOF1-203ENST00000394269 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.86□□□□□ -1.79
TCOF1-203ENST00000394269 KRTAP9-6A8MVA2 160 aa3.86□□□□□ -1.79
TCOF1-203ENST00000394269 KRTAP9-7A8MTY7 169 aa3.83□□□□□ -1.8
TCOF1-203ENST00000394269 KRTAP4-3Q9BYR4 195 aa3.83□□□□□ -1.8
TCOF1-203ENST00000394269 INE1O15225 51 aa3.78□□□□□ -1.8
TCOF1-203ENST00000394269 SPRR2EP22531 72 aa3.77□□□□□ -1.81
TCOF1-203ENST00000394269 SPRR2BP35325 72 aa3.77□□□□□ -1.81
TCOF1-203ENST00000394269 SPRR2AP35326 72 aa3.77□□□□□ -1.81
TCOF1-203ENST00000394269 LOC100996750A0A140TA64 210 aa3.76□□□□□ -1.81
TCOF1-203ENST00000394269 MT1GP13640 62 aa3.73□□□□□ -1.81
TCOF1-203ENST00000394269 KRTAP19-3Q7Z4W3 81 aa3.72□□□□□ -1.81
TCOF1-203ENST00000394269 MT1MQ8N339 61 aa3.69□□□□□ -1.82
TCOF1-203ENST00000394269 KRTAP19-4Q3LI73 84 aa3.62□□□□□ -1.83
TCOF1-203ENST00000394269 SPRR2DP22532 72 aa3.6□□□□□ -1.83
TCOF1-203ENST00000394269 LCE5AQ5TCM9 118 aa3.59□□□□□ -1.83
TCOF1-203ENST00000394269 KRTAP2-3P0C7H8 128 aa3.54□□□□□ -1.84
TCOF1-203ENST00000394269 KRTAP2-4Q9BYR9 128 aa3.54□□□□□ -1.84
TCOF1-203ENST00000394269 KRTAP2-1Q9BYU5 128 aa3.54□□□□□ -1.84
TCOF1-203ENST00000394269 NEBP20929 6669 aa3.5□□□□□ -1.85
TCOF1-203ENST00000394269 LCE1AQ5T7P2 110 aa3.5□□□□□ -1.85
TCOF1-203ENST00000394269 KRTAP4-9Q9BYQ8 210 aa3.47□□□□□ -1.85
TCOF1-203ENST00000394269 KRTAP6-3Q3LI67 103 aa3.47□□□□□ -1.85
TCOF1-203ENST00000394269 KRTAP5-9P26371 169 aa3.44□□□□□ -1.86
TCOF1-203ENST00000394269 MT4P47944 62 aa3.43□□□□□ -1.86
TCOF1-203ENST00000394269 LCE3BQ5TA77 95 aa3.42□□□□□ -1.86
TCOF1-203ENST00000394269 LCE1FQ5T754 118 aa3.36□□□□□ -1.87
TCOF1-203ENST00000394269 KRTAP6-1Q3LI64 71 aa3.34□□□□□ -1.87
TCOF1-203ENST00000394269 LCE1EQ5T753 118 aa3.33□□□□□ -1.88
TCOF1-203ENST00000394269 KRTAP20-1Q3LI63 56 aa3.32□□□□□ -1.88
TCOF1-203ENST00000394269 MT1AP04731 61 aa3.24□□□□□ -1.89
TCOF1-203ENST00000394269 KRTAP9-4Q9BYQ2 154 aa3.23□□□□□ -1.89
TCOF1-203ENST00000394269 KRTAP12-4P60329 112 aa3.23□□□□□ -1.89
TCOF1-203ENST00000394269 KRTAP2-2Q9BYT5 123 aa3.22□□□□□ -1.89
TCOF1-203ENST00000394269 LCE4AQ5TA78 99 aa3.2□□□□□ -1.9
TCOF1-203ENST00000394269 KRTAP5-5Q701N2 237 aaPredicted RBP3.18□□□□□ -1.9
TCOF1-203ENST00000394269 LCE3EQ5T5B0 92 aa3.15□□□□□ -1.91
TCOF1-203ENST00000394269 KRTAP4-6Q9BYQ5 205 aa3.15□□□□□ -1.91
TCOF1-203ENST00000394269 LCE1DQ5T752 114 aa3.1□□□□□ -1.91
TCOF1-203ENST00000394269 HMCN1Q96RW7 5635 aa3.1□□□□□ -1.91
TCOF1-203ENST00000394269 LCE3DQ9BYE3 92 aa3.09□□□□□ -1.91
TCOF1-203ENST00000394269 MUC19Q7Z5P9 8384 aa3.09□□□□□ -1.92
TCOF1-203ENST00000394269 KRTAP9-9Q9BYP9 154 aa3.07□□□□□ -1.92
TCOF1-203ENST00000394269 KRTAP6-2Q3LI66 62 aa3.06□□□□□ -1.92
TCOF1-203ENST00000394269 MT3P25713 68 aa2.97□□□□□ -1.93
TCOF1-203ENST00000394269 GPR98Q8WXG9 6306 aa2.93□□□□□ -1.94
TCOF1-203ENST00000394269 KRTAP5-4Q6L8H1 288 aa2.89□□□□□ -1.95
TCOF1-203ENST00000394269 MUC5ACP98088 5654 aa2.82□□□□□ -1.96
TCOF1-203ENST00000394269 PRM1P04553 51 aa2.82□□□□□ -1.96
TCOF1-203ENST00000394269 KRTAP20-2Q3LI61 65 aa2.82□□□□□ -1.96
TCOF1-203ENST00000394269 LCE1BQ5T7P3 118 aa2.75□□□□□ -1.97
TCOF1-203ENST00000394269 AHNAK2Q8IVF2 5795 aa2.71□□□□□ -1.98
TCOF1-203ENST00000394269 MUC5BQ9HC84 5762 aaPredicted RBP2.65□□□□□ -1.99
TCOF1-203ENST00000394269 KRTAP5-2Q701N4 177 aa2.65□□□□□ -1.99
TCOF1-203ENST00000394269 KRTAP5-3Q6L8H2 238 aa2.63□□□□□ -1.99
TCOF1-203ENST00000394269 KRTAP4-11Q9BYQ6 195 aa2.53□□□□□ -2
TCOF1-203ENST00000394269 KRTAP4-12Q9BQ66 201 aa2.42□□□□□ -2.02
TCOF1-203ENST00000394269 KRTAP4-2Q9BYR5 136 aa2.42□□□□□ -2.02
TCOF1-203ENST00000394269 KRTAP5-8O75690 187 aa2.41□□□□□ -2.02
TCOF1-203ENST00000394269 KRTAP5-1Q6L8H4 278 aa2.34□□□□□ -2.04
TCOF1-203ENST00000394269 KRTAP5-10Q6L8G5 202 aa2.33□□□□□ -2.04
TCOF1-203ENST00000394269 KRTAP4-4Q9BYR3 166 aa2.28□□□□□ -2.04
TCOF1-203ENST00000394269 LCE1CQ5T751 118 aa2.27□□□□□ -2.05
TCOF1-203ENST00000394269 AHNAKQ09666 5890 aaKnown RBP2.15□□□□□ -2.07
TCOF1-203ENST00000394269 KRTAP21-2Q3LI59 83 aa2.11□□□□□ -2.07
TCOF1-203ENST00000394269 KRTAP5-7Q6L8G8 165 aa2.06□□□□□ -2.08
TCOF1-203ENST00000394269 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.05□□□□□ -2.08
TCOF1-203ENST00000394269 KRTAP5-11Q6L8G4 156 aa1.95□□□□□ -2.1
TCOF1-203ENST00000394269 KRTAP21-1Q3LI58 79 aa1.75□□□□□ -2.13
TCOF1-203ENST00000394269 PHGR1C9JFL3 82 aa1.71□□□□□ -2.14
TCOF1-203ENST00000394269 MUC16Q8WXI7 14507 aa1.08□□□□□ -2.24
Retrieved 77 of 20,778 RNA–protein pairs in 52 ms