RNA–Protein interactions for RNA: ENST00000393310.5

LIMS1-203, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMS1, Length 4,392 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-203ENST00000393310 KRTAP19-2Q3LHN2 52 aa3.26□□□□□ -1.89
LIMS1-203ENST00000393310 MT3P25713 68 aa3.23□□□□□ -1.89
LIMS1-203ENST00000393310 SPRR5A0A1B0GTR4 108 aa3.23□□□□□ -1.89
LIMS1-203ENST00000393310 LCE4AQ5TA78 99 aa3.22□□□□□ -1.89
LIMS1-203ENST00000393310 SYNE2Q8WXH0 6885 aaKnown RBP3.21□□□□□ -1.9
LIMS1-203ENST00000393310 MACF1Q9UPN3 7388 aaKnown RBP3.2□□□□□ -1.9
LIMS1-203ENST00000393310 KRTAP12-4P60329 112 aa3.19□□□□□ -1.9
LIMS1-203ENST00000393310 USH2AO75445 5202 aa3.16□□□□□ -1.9
LIMS1-203ENST00000393310 GPR98Q8WXG9 6306 aa3.15□□□□□ -1.91
LIMS1-203ENST00000393310 NEBP20929 6669 aa3.13□□□□□ -1.91
LIMS1-203ENST00000393310 MT1BP07438 61 aa3.11□□□□□ -1.91
LIMS1-203ENST00000393310 MT1GP13640 62 aa3.07□□□□□ -1.92
LIMS1-203ENST00000393310 LCE1FQ5T754 118 aa3.06□□□□□ -1.92
LIMS1-203ENST00000393310 KRTAP9-9Q9BYP9 154 aa3.06□□□□□ -1.92
LIMS1-203ENST00000393310 LCE3CQ5T5A8 94 aa3.06□□□□□ -1.92
LIMS1-203ENST00000393310 KMT2DO14686 5537 aa3.04□□□□□ -1.92
LIMS1-203ENST00000393310 KRTAP5-9P26371 169 aa3.01□□□□□ -1.93
LIMS1-203ENST00000393310 SSPOA2VEC9 5147 aa3.01□□□□□ -1.93
LIMS1-203ENST00000393310 KRTAP12-3P60328 96 aa3□□□□□ -1.93
LIMS1-203ENST00000393310 MT4P47944 62 aa2.97□□□□□ -1.93
LIMS1-203ENST00000393310 KRTAP19-3Q7Z4W3 81 aa2.96□□□□□ -1.94
LIMS1-203ENST00000393310 LCE3AQ5TA76 89 aa2.94□□□□□ -1.94
LIMS1-203ENST00000393310 MT1XP80297 61 aa2.91□□□□□ -1.94
LIMS1-203ENST00000393310 SYNE1Q8NF91 8797 aaKnown RBP2.91□□□□□ -1.94
LIMS1-203ENST00000393310 DSTQ03001 7570 aaKnown RBP2.89□□□□□ -1.95
LIMS1-203ENST00000393310 LOC100996750A0A140TA64 210 aa2.85□□□□□ -1.95
LIMS1-203ENST00000393310 KRTAP4-6Q9BYQ5 205 aa2.85□□□□□ -1.95
LIMS1-203ENST00000393310 OBSCNQ5VST9 7968 aa2.84□□□□□ -1.95
LIMS1-203ENST00000393310 KRTAP19-5Q3LI72 72 aa2.82□□□□□ -1.96
LIMS1-203ENST00000393310 LCE3EQ5T5B0 92 aa2.81□□□□□ -1.96
LIMS1-203ENST00000393310 LCE1EQ5T753 118 aa2.79□□□□□ -1.96
LIMS1-203ENST00000393310 KRTAP4-9Q9BYQ8 210 aa2.79□□□□□ -1.96
LIMS1-203ENST00000393310 FCGBPQ9Y6R7 5405 aaPredicted RBP2.77□□□□□ -1.97
LIMS1-203ENST00000393310 KRTAP4-8A0A0G2JLE6 195 aa2.77□□□□□ -1.97
LIMS1-203ENST00000393310 KRTAP4-8Q9BYQ9 185 aa2.77□□□□□ -1.97
LIMS1-203ENST00000393310 MT1EP04732 61 aa2.74□□□□□ -1.97
LIMS1-203ENST00000393310 MT1MQ8N339 61 aa2.69□□□□□ -1.98
LIMS1-203ENST00000393310 LCE1DQ5T752 114 aa2.66□□□□□ -1.98
LIMS1-203ENST00000393310 MT1LQ93083 61 aa2.62□□□□□ -1.99
LIMS1-203ENST00000393310 LCE3DQ9BYE3 92 aa2.62□□□□□ -1.99
LIMS1-203ENST00000393310 MDN1Q9NU22 5596 aa2.58□□□□□ -2
LIMS1-203ENST00000393310 PRM1P04553 51 aa2.54□□□□□ -2
LIMS1-203ENST00000393310 HMCN1Q96RW7 5635 aa2.53□□□□□ -2
LIMS1-203ENST00000393310 AHNAK2Q8IVF2 5795 aa2.5□□□□□ -2.01
LIMS1-203ENST00000393310 MUC12Q9UKN1 5478 aa2.5□□□□□ -2.01
LIMS1-203ENST00000393310 KRTAP5-3Q6L8H2 238 aa2.49□□□□□ -2.01
LIMS1-203ENST00000393310 KRTAP5-4Q6L8H1 288 aa2.49□□□□□ -2.01
LIMS1-203ENST00000393310 KRTAP19-7Q3SYF9 63 aa2.47□□□□□ -2.01
LIMS1-203ENST00000393310 KRTAP4-12Q9BQ66 201 aa2.47□□□□□ -2.01
LIMS1-203ENST00000393310 MT1AP04731 61 aa2.46□□□□□ -2.02
LIMS1-203ENST00000393310 KRTAP20-2Q3LI61 65 aa2.41□□□□□ -2.02
LIMS1-203ENST00000393310 KRTAP5-7Q6L8G8 165 aa2.41□□□□□ -2.02
LIMS1-203ENST00000393310 KRTAP4-7Q9BYR0 210 aa2.41□□□□□ -2.02
LIMS1-203ENST00000393310 KRTAP4-11Q9BYQ6 195 aa2.34□□□□□ -2.03
LIMS1-203ENST00000393310 LCE1BQ5T7P3 118 aa2.34□□□□□ -2.04
LIMS1-203ENST00000393310 AHNAKQ09666 5890 aaKnown RBP2.31□□□□□ -2.04
LIMS1-203ENST00000393310 KRTAP5-10Q6L8G5 202 aa2.26□□□□□ -2.05
LIMS1-203ENST00000393310 KRTAP4-3Q9BYR4 195 aa2.26□□□□□ -2.05
LIMS1-203ENST00000393310 MUC19Q7Z5P9 8384 aa2.23□□□□□ -2.05
LIMS1-203ENST00000393310 KRTAP6-2Q3LI66 62 aa2.2□□□□□ -2.06
LIMS1-203ENST00000393310 KRTAP4-2Q9BYR5 136 aa2.17□□□□□ -2.06
LIMS1-203ENST00000393310 LCE1CQ5T751 118 aa2.15□□□□□ -2.06
LIMS1-203ENST00000393310 KRTAP9-6A8MVA2 160 aa2.1□□□□□ -2.07
LIMS1-203ENST00000393310 KRTAP6-1Q3LI64 71 aa2.1□□□□□ -2.07
LIMS1-203ENST00000393310 KRTAP5-8O75690 187 aa2.07□□□□□ -2.08
LIMS1-203ENST00000393310 MUC5ACP98088 5654 aa2.05□□□□□ -2.08
LIMS1-203ENST00000393310 MUC5BQ9HC84 5762 aaPredicted RBP2□□□□□ -2.09
LIMS1-203ENST00000393310 KRTAP5-5Q701N2 237 aaPredicted RBP1.96□□□□□ -2.1
LIMS1-203ENST00000393310 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.9□□□□□ -2.11
LIMS1-203ENST00000393310 KRTAP5-2Q701N4 177 aa1.87□□□□□ -2.11
LIMS1-203ENST00000393310 PHGR1C9JFL3 82 aa1.85□□□□□ -2.11
LIMS1-203ENST00000393310 KRTAP5-1Q6L8H4 278 aa1.7□□□□□ -2.14
LIMS1-203ENST00000393310 KRTAP5-11Q6L8G4 156 aa1.6□□□□□ -2.15
LIMS1-203ENST00000393310 KRTAP21-1Q3LI58 79 aa1.54□□□□□ -2.16
LIMS1-203ENST00000393310 KRTAP4-4Q9BYR3 166 aa1.45□□□□□ -2.18
LIMS1-203ENST00000393310 KRTAP21-2Q3LI59 83 aa1.36□□□□□ -2.19
LIMS1-203ENST00000393310 MUC16Q8WXI7 14507 aa0.98□□□□□ -2.25
Retrieved 77 of 20,778 RNA–protein pairs in 12.8 ms