RNA–Protein interactions for RNA: ENST00000392456.3

CCDC50-202, Transcript of coiled-coil domain containing 50, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene CCDC50, Length 2,454 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC50-202ENST00000392456 KRTAP2-4Q9BYR9 128 aa6.7□□□□□ -1.34
CCDC50-202ENST00000392456 KRTAP2-1Q9BYU5 128 aa6.7□□□□□ -1.34
CCDC50-202ENST00000392456 KRTAP9-6A0A140TA67 174 aa6.68□□□□□ -1.34
CCDC50-202ENST00000392456 SPRR2FQ96RM1 72 aa6.6□□□□□ -1.35
CCDC50-202ENST00000392456 LCE3CQ5T5A8 94 aa6.59□□□□□ -1.35
CCDC50-202ENST00000392456 MT1LQ93083 61 aa6.59□□□□□ -1.35
CCDC50-202ENST00000392456 MDN1Q9NU22 5596 aa6.58□□□□□ -1.36
CCDC50-202ENST00000392456 KRTAP4-7Q9BYR0 210 aa6.54□□□□□ -1.36
CCDC50-202ENST00000392456 KRTAP9-1A8MXZ3 250 aaPredicted RBP6.52□□□□□ -1.37
CCDC50-202ENST00000392456 KRTAP9-6A8MVA2 160 aa6.51□□□□□ -1.37
CCDC50-202ENST00000392456 KRTAP5-9P26371 169 aa6.45□□□□□ -1.38
CCDC50-202ENST00000392456 KRTAP19-3Q7Z4W3 81 aa6.43□□□□□ -1.38
CCDC50-202ENST00000392456 DSTQ03001 7570 aaKnown RBP6.35□□□□□ -1.39
CCDC50-202ENST00000392456 KRTAP4-3Q9BYR4 195 aa6.35□□□□□ -1.39
CCDC50-202ENST00000392456 MT1GP13640 62 aa6.34□□□□□ -1.4
CCDC50-202ENST00000392456 LCE5AQ5TCM9 118 aa6.34□□□□□ -1.4
CCDC50-202ENST00000392456 MT1MQ8N339 61 aa6.33□□□□□ -1.4
CCDC50-202ENST00000392456 LCE1AQ5T7P2 110 aa6.31□□□□□ -1.4
CCDC50-202ENST00000392456 KRTAP6-3Q3LI67 103 aa6.3□□□□□ -1.4
CCDC50-202ENST00000392456 KRTAP19-4Q3LI73 84 aa6.26□□□□□ -1.41
CCDC50-202ENST00000392456 SPRR2EP22531 72 aa6.22□□□□□ -1.41
CCDC50-202ENST00000392456 SPRR2BP35325 72 aa6.22□□□□□ -1.41
CCDC50-202ENST00000392456 SPRR2AP35326 72 aa6.22□□□□□ -1.41
CCDC50-202ENST00000392456 KRTAP12-4P60329 112 aa6.16□□□□□ -1.42
CCDC50-202ENST00000392456 LOC100996750A0A140TA64 210 aa6.14□□□□□ -1.43
CCDC50-202ENST00000392456 KRTAP9-7A8MTY7 169 aa6.14□□□□□ -1.43
CCDC50-202ENST00000392456 KRTAP2-2Q9BYT5 123 aa6.06□□□□□ -1.44
CCDC50-202ENST00000392456 NEBP20929 6669 aa6.03□□□□□ -1.44
CCDC50-202ENST00000392456 SPRR2DP22532 72 aa5.97□□□□□ -1.45
CCDC50-202ENST00000392456 LCE3BQ5TA77 95 aa5.74□□□□□ -1.49
CCDC50-202ENST00000392456 KRTAP5-5Q701N2 237 aaPredicted RBP5.7□□□□□ -1.5
CCDC50-202ENST00000392456 PRM1P04553 51 aa5.62□□□□□ -1.51
CCDC50-202ENST00000392456 SYNE1Q8NF91 8797 aaKnown RBP5.61□□□□□ -1.51
CCDC50-202ENST00000392456 KRTAP6-1Q3LI64 71 aa5.6□□□□□ -1.51
CCDC50-202ENST00000392456 MT1AP04731 61 aa5.55□□□□□ -1.52
CCDC50-202ENST00000392456 LCE1EQ5T753 118 aa5.5□□□□□ -1.53
CCDC50-202ENST00000392456 KRTAP5-4Q6L8H1 288 aa5.4□□□□□ -1.55
CCDC50-202ENST00000392456 KRTAP20-1Q3LI63 56 aa5.39□□□□□ -1.55
CCDC50-202ENST00000392456 KRTAP4-9Q9BYQ8 210 aa5.35□□□□□ -1.55
CCDC50-202ENST00000392456 LCE1DQ5T752 114 aa5.3□□□□□ -1.56
CCDC50-202ENST00000392456 LCE3EQ5T5B0 92 aa5.29□□□□□ -1.56
CCDC50-202ENST00000392456 KRTAP9-4Q9BYQ2 154 aa5.29□□□□□ -1.56
CCDC50-202ENST00000392456 MT4P47944 62 aa5.28□□□□□ -1.56
CCDC50-202ENST00000392456 KRTAP4-6Q9BYQ5 205 aa5.27□□□□□ -1.57
CCDC50-202ENST00000392456 LCE3DQ9BYE3 92 aa5.24□□□□□ -1.57
CCDC50-202ENST00000392456 HMCN1Q96RW7 5635 aa5.22□□□□□ -1.57
CCDC50-202ENST00000392456 LCE4AQ5TA78 99 aa5.21□□□□□ -1.57
CCDC50-202ENST00000392456 KRTAP6-2Q3LI66 62 aa5.15□□□□□ -1.58
CCDC50-202ENST00000392456 OBSCNQ5VST9 7968 aa5.12□□□□□ -1.59
CCDC50-202ENST00000392456 KRTAP20-2Q3LI61 65 aa5.08□□□□□ -1.6
CCDC50-202ENST00000392456 MT3P25713 68 aa5.01□□□□□ -1.61
CCDC50-202ENST00000392456 KRTAP5-2Q701N4 177 aa4.9□□□□□ -1.63
CCDC50-202ENST00000392456 KRTAP5-3Q6L8H2 238 aa4.89□□□□□ -1.63
CCDC50-202ENST00000392456 LCE1FQ5T754 118 aa4.85□□□□□ -1.63
CCDC50-202ENST00000392456 AHNAK2Q8IVF2 5795 aa4.54□□□□□ -1.68
CCDC50-202ENST00000392456 KRTAP4-11Q9BYQ6 195 aa4.4□□□□□ -1.7
CCDC50-202ENST00000392456 KRTAP5-1Q6L8H4 278 aa4.29□□□□□ -1.72
CCDC50-202ENST00000392456 KRTAP5-8O75690 187 aa4.24□□□□□ -1.73
CCDC50-202ENST00000392456 KRTAP5-10Q6L8G5 202 aa4.22□□□□□ -1.73
CCDC50-202ENST00000392456 MUC5ACP98088 5654 aa4.21□□□□□ -1.74
CCDC50-202ENST00000392456 LCE1BQ5T7P3 118 aa4.18□□□□□ -1.74
CCDC50-202ENST00000392456 KRTAP4-2Q9BYR5 136 aa4.12□□□□□ -1.75
CCDC50-202ENST00000392456 GPR98Q8WXG9 6306 aa4.11□□□□□ -1.75
CCDC50-202ENST00000392456 LCE1CQ5T751 118 aa4.05□□□□□ -1.76
CCDC50-202ENST00000392456 KRTAP5-7Q6L8G8 165 aa4.03□□□□□ -1.76
CCDC50-202ENST00000392456 MUC5BQ9HC84 5762 aaPredicted RBP3.86□□□□□ -1.79
CCDC50-202ENST00000392456 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.77□□□□□ -1.81
CCDC50-202ENST00000392456 KRTAP9-9Q9BYP9 154 aa3.75□□□□□ -1.81
CCDC50-202ENST00000392456 MUC19Q7Z5P9 8384 aa3.74□□□□□ -1.81
CCDC50-202ENST00000392456 KRTAP21-1Q3LI58 79 aa3.69□□□□□ -1.82
CCDC50-202ENST00000392456 KRTAP21-2Q3LI59 83 aa3.65□□□□□ -1.82
CCDC50-202ENST00000392456 KRTAP5-11Q6L8G4 156 aa3.55□□□□□ -1.84
CCDC50-202ENST00000392456 KRTAP4-12Q9BQ66 201 aa3.51□□□□□ -1.85
CCDC50-202ENST00000392456 AHNAKQ09666 5890 aaKnown RBP3.39□□□□□ -1.87
CCDC50-202ENST00000392456 KRTAP4-4Q9BYR3 166 aa3.35□□□□□ -1.87
CCDC50-202ENST00000392456 PHGR1C9JFL3 82 aa3.09□□□□□ -1.92
CCDC50-202ENST00000392456 MUC16Q8WXI7 14507 aa1.97□□□□□ -2.09
Retrieved 77 of 20,778 RNA–protein pairs in 11 ms