RNA–Protein interactions for RNA: ENST00000389040.9

VPS53-202, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 1,903 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-202ENST00000389040 NDUFAF8A1L188 74 aa4.03□□□□□ -1.76
VPS53-202ENST00000389040 KRTAP4-8A0A0G2JLE6 195 aa4.01□□□□□ -1.77
VPS53-202ENST00000389040 LCE3AQ5TA76 89 aa4.01□□□□□ -1.77
VPS53-202ENST00000389040 KRTAP5-9P26371 169 aa4□□□□□ -1.77
VPS53-202ENST00000389040 SYNE2Q8WXH0 6885 aaKnown RBP4□□□□□ -1.77
VPS53-202ENST00000389040 KRTAP10-7P60409 375 aaPredicted RBP3.99□□□□□ -1.77
VPS53-202ENST00000389040 KRTAP8-1Q8IUC2 63 aa3.97□□□□□ -1.77
VPS53-202ENST00000389040 KMT2DO14686 5537 aa3.9□□□□□ -1.79
VPS53-202ENST00000389040 LCE1AQ5T7P2 110 aa3.89□□□□□ -1.79
VPS53-202ENST00000389040 SPRR2FQ96RM1 72 aa3.88□□□□□ -1.79
VPS53-202ENST00000389040 KRTAP4-9Q9BYQ8 210 aa3.87□□□□□ -1.79
VPS53-202ENST00000389040 SPRR5A0A1B0GTR4 108 aa3.84□□□□□ -1.79
VPS53-202ENST00000389040 KRTAP12-3P60328 96 aa3.84□□□□□ -1.79
VPS53-202ENST00000389040 KRTAP4-11Q9BYQ6 195 aa3.84□□□□□ -1.79
VPS53-202ENST00000389040 KRTAP4-7Q9BYR0 210 aa3.83□□□□□ -1.8
VPS53-202ENST00000389040 MUC12Q9UKN1 5478 aa3.82□□□□□ -1.8
VPS53-202ENST00000389040 MDN1Q9NU22 5596 aa3.79□□□□□ -1.8
VPS53-202ENST00000389040 SPRR2EP22531 72 aa3.76□□□□□ -1.81
VPS53-202ENST00000389040 SPRR2BP35325 72 aa3.76□□□□□ -1.81
VPS53-202ENST00000389040 SPRR2AP35326 72 aa3.76□□□□□ -1.81
VPS53-202ENST00000389040 KRTAP19-7Q3SYF9 63 aa3.76□□□□□ -1.81
VPS53-202ENST00000389040 KRTAP19-5Q3LI72 72 aa3.75□□□□□ -1.81
VPS53-202ENST00000389040 NEBP20929 6669 aa3.75□□□□□ -1.81
VPS53-202ENST00000389040 KRTAP5-3Q6L8H2 238 aa3.73□□□□□ -1.81
VPS53-202ENST00000389040 MT1EP04732 61 aa3.72□□□□□ -1.81
VPS53-202ENST00000389040 KRTAP4-2Q9BYR5 136 aa3.68□□□□□ -1.82
VPS53-202ENST00000389040 KRTAP19-3Q7Z4W3 81 aa3.67□□□□□ -1.82
VPS53-202ENST00000389040 SPRR2DP22532 72 aa3.64□□□□□ -1.83
VPS53-202ENST00000389040 KRTAP2-3P0C7H8 128 aa3.64□□□□□ -1.83
VPS53-202ENST00000389040 MT1GP13640 62 aa3.64□□□□□ -1.83
VPS53-202ENST00000389040 KRTAP20-1Q3LI63 56 aa3.64□□□□□ -1.83
VPS53-202ENST00000389040 KRTAP2-4Q9BYR9 128 aa3.64□□□□□ -1.83
VPS53-202ENST00000389040 MT3P25713 68 aa3.63□□□□□ -1.83
VPS53-202ENST00000389040 LCE3CQ5T5A8 94 aa3.6□□□□□ -1.83
VPS53-202ENST00000389040 MT1LQ93083 61 aa3.6□□□□□ -1.83
VPS53-202ENST00000389040 LCE1FQ5T754 118 aa3.55□□□□□ -1.84
VPS53-202ENST00000389040 KRTAP2-2Q9BYT5 123 aa3.54□□□□□ -1.84
VPS53-202ENST00000389040 KRTAP2-1Q9BYU5 128 aa3.54□□□□□ -1.84
VPS53-202ENST00000389040 MT1MQ8N339 61 aa3.52□□□□□ -1.85
VPS53-202ENST00000389040 KRTAP9-6A8MVA2 160 aa3.43□□□□□ -1.86
VPS53-202ENST00000389040 DSTQ03001 7570 aaKnown RBP3.39□□□□□ -1.87
VPS53-202ENST00000389040 INE1O15225 51 aa3.37□□□□□ -1.87
VPS53-202ENST00000389040 KRTAP4-3Q9BYR4 195 aa3.35□□□□□ -1.87
VPS53-202ENST00000389040 KRTAP5-4Q6L8H1 288 aa3.26□□□□□ -1.89
VPS53-202ENST00000389040 KRTAP5-5Q701N2 237 aaPredicted RBP3.23□□□□□ -1.89
VPS53-202ENST00000389040 MT4P47944 62 aa3.13□□□□□ -1.91
VPS53-202ENST00000389040 KRTAP12-4P60329 112 aa3.13□□□□□ -1.91
VPS53-202ENST00000389040 MT1AP04731 61 aa3.08□□□□□ -1.92
VPS53-202ENST00000389040 HMCN1Q96RW7 5635 aa3.08□□□□□ -1.92
VPS53-202ENST00000389040 KRTAP20-2Q3LI61 65 aa3.03□□□□□ -1.92
VPS53-202ENST00000389040 LCE3EQ5T5B0 92 aa3.03□□□□□ -1.92
VPS53-202ENST00000389040 KRTAP6-1Q3LI64 71 aa3.01□□□□□ -1.93
VPS53-202ENST00000389040 SYNE1Q8NF91 8797 aaKnown RBP2.97□□□□□ -1.93
VPS53-202ENST00000389040 KRTAP5-2Q701N4 177 aa2.89□□□□□ -1.95
VPS53-202ENST00000389040 KRTAP5-10Q6L8G5 202 aa2.84□□□□□ -1.95
VPS53-202ENST00000389040 KRTAP6-2Q3LI66 62 aa2.83□□□□□ -1.96
VPS53-202ENST00000389040 AHNAK2Q8IVF2 5795 aa2.83□□□□□ -1.96
VPS53-202ENST00000389040 GPR98Q8WXG9 6306 aa2.83□□□□□ -1.96
VPS53-202ENST00000389040 LCE1EQ5T753 118 aa2.81□□□□□ -1.96
VPS53-202ENST00000389040 LCE3DQ9BYE3 92 aa2.74□□□□□ -1.97
VPS53-202ENST00000389040 KRTAP5-7Q6L8G8 165 aa2.72□□□□□ -1.97
VPS53-202ENST00000389040 KRTAP5-11Q6L8G4 156 aa2.63□□□□□ -1.99
VPS53-202ENST00000389040 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.62□□□□□ -1.99
VPS53-202ENST00000389040 KRTAP5-8O75690 187 aa2.61□□□□□ -1.99
VPS53-202ENST00000389040 OBSCNQ5VST9 7968 aa2.57□□□□□ -2
VPS53-202ENST00000389040 KRTAP5-1Q6L8H4 278 aa2.54□□□□□ -2
VPS53-202ENST00000389040 PRM1P04553 51 aa2.46□□□□□ -2.02
VPS53-202ENST00000389040 MUC5ACP98088 5654 aa2.4□□□□□ -2.03
VPS53-202ENST00000389040 LCE1CQ5T751 118 aa2.38□□□□□ -2.03
VPS53-202ENST00000389040 LCE1BQ5T7P3 118 aa2.38□□□□□ -2.03
VPS53-202ENST00000389040 MUC5BQ9HC84 5762 aaPredicted RBP2.32□□□□□ -2.04
VPS53-202ENST00000389040 AHNAKQ09666 5890 aaKnown RBP2.26□□□□□ -2.05
VPS53-202ENST00000389040 KRTAP4-4Q9BYR3 166 aa2.17□□□□□ -2.06
VPS53-202ENST00000389040 KRTAP21-2Q3LI59 83 aa2□□□□□ -2.09
VPS53-202ENST00000389040 PHGR1C9JFL3 82 aa1.82□□□□□ -2.12
VPS53-202ENST00000389040 MUC19Q7Z5P9 8384 aa1.56□□□□□ -2.16
VPS53-202ENST00000389040 KRTAP21-1Q3LI58 79 aa1.53□□□□□ -2.16
VPS53-202ENST00000389040 MUC16Q8WXI7 14507 aa1.13□□□□□ -2.23
Retrieved 78 of 20,778 RNA–protein pairs in 11.1 ms