RNA–Protein interactions for RNA: ENST00000380075.6

TRIM54-202, Transcript of tripartite motif containing 54, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM54, Length 1,967 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-202ENST00000380075 KRTAP5-9P26371 169 aa7.81□□□□□ -1.16
TRIM54-202ENST00000380075 MUC12Q9UKN1 5478 aa7.8□□□□□ -1.16
TRIM54-202ENST00000380075 KRTAP19-4Q3LI73 84 aa7.77□□□□□ -1.17
TRIM54-202ENST00000380075 KRTAP19-7Q3SYF9 63 aa7.77□□□□□ -1.17
TRIM54-202ENST00000380075 SPRR2FQ96RM1 72 aa7.73□□□□□ -1.17
TRIM54-202ENST00000380075 MDN1Q9NU22 5596 aa7.68□□□□□ -1.18
TRIM54-202ENST00000380075 NEBP20929 6669 aa7.64□□□□□ -1.19
TRIM54-202ENST00000380075 MT1EP04732 61 aa7.6□□□□□ -1.19
TRIM54-202ENST00000380075 MT1LQ93083 61 aa7.55□□□□□ -1.2
TRIM54-202ENST00000380075 SPRR2EP22531 72 aa7.48□□□□□ -1.21
TRIM54-202ENST00000380075 SPRR2BP35325 72 aa7.48□□□□□ -1.21
TRIM54-202ENST00000380075 SPRR2AP35326 72 aa7.48□□□□□ -1.21
TRIM54-202ENST00000380075 LCE1AQ5T7P2 110 aa7.46□□□□□ -1.22
TRIM54-202ENST00000380075 KRTAP9-6A8MVA2 160 aa7.39□□□□□ -1.23
TRIM54-202ENST00000380075 KRTAP4-7Q9BYR0 210 aa7.37□□□□□ -1.23
TRIM54-202ENST00000380075 INE1O15225 51 aa7.28□□□□□ -1.24
TRIM54-202ENST00000380075 KRTAP19-3Q7Z4W3 81 aa7.24□□□□□ -1.25
TRIM54-202ENST00000380075 SPRR2DP22532 72 aa7.22□□□□□ -1.25
TRIM54-202ENST00000380075 LCE5AQ5TCM9 118 aa7.2□□□□□ -1.26
TRIM54-202ENST00000380075 MT1GP13640 62 aa7.19□□□□□ -1.26
TRIM54-202ENST00000380075 KRTAP2-3P0C7H8 128 aa7.15□□□□□ -1.27
TRIM54-202ENST00000380075 KRTAP2-4Q9BYR9 128 aa7.15□□□□□ -1.27
TRIM54-202ENST00000380075 KRTAP2-1Q9BYU5 128 aa7.15□□□□□ -1.27
TRIM54-202ENST00000380075 KRTAP20-1Q3LI63 56 aa7.13□□□□□ -1.27
TRIM54-202ENST00000380075 MT1MQ8N339 61 aa7.11□□□□□ -1.27
TRIM54-202ENST00000380075 DSTQ03001 7570 aaKnown RBP7.05□□□□□ -1.28
TRIM54-202ENST00000380075 LCE3BQ5TA77 95 aa6.99□□□□□ -1.29
TRIM54-202ENST00000380075 KRTAP4-3Q9BYR4 195 aa6.99□□□□□ -1.29
TRIM54-202ENST00000380075 KRTAP2-2Q9BYT5 123 aa6.89□□□□□ -1.31
TRIM54-202ENST00000380075 LOC100996750A0A140TA64 210 aa6.88□□□□□ -1.31
TRIM54-202ENST00000380075 KRTAP4-9Q9BYQ8 210 aa6.41□□□□□ -1.38
TRIM54-202ENST00000380075 MT1AP04731 61 aa6.4□□□□□ -1.38
TRIM54-202ENST00000380075 KRTAP5-5Q701N2 237 aaPredicted RBP6.39□□□□□ -1.39
TRIM54-202ENST00000380075 KRTAP5-4Q6L8H1 288 aa6.38□□□□□ -1.39
TRIM54-202ENST00000380075 LCE4AQ5TA78 99 aa6.38□□□□□ -1.39
TRIM54-202ENST00000380075 KRTAP6-1Q3LI64 71 aa6.34□□□□□ -1.39
TRIM54-202ENST00000380075 MT4P47944 62 aa6.31□□□□□ -1.4
TRIM54-202ENST00000380075 LCE1DQ5T752 114 aa6.29□□□□□ -1.4
TRIM54-202ENST00000380075 HMCN1Q96RW7 5635 aa6.23□□□□□ -1.41
TRIM54-202ENST00000380075 KRTAP4-6Q9BYQ5 205 aa6.2□□□□□ -1.42
TRIM54-202ENST00000380075 KRTAP12-4P60329 112 aa6.18□□□□□ -1.42
TRIM54-202ENST00000380075 SYNE1Q8NF91 8797 aaKnown RBP6.15□□□□□ -1.42
TRIM54-202ENST00000380075 KRTAP9-4Q9BYQ2 154 aa6.04□□□□□ -1.44
TRIM54-202ENST00000380075 KRTAP20-2Q3LI61 65 aa6□□□□□ -1.45
TRIM54-202ENST00000380075 LCE3DQ9BYE3 92 aa5.98□□□□□ -1.45
TRIM54-202ENST00000380075 LCE3EQ5T5B0 92 aa5.89□□□□□ -1.47
TRIM54-202ENST00000380075 KRTAP5-3Q6L8H2 238 aa5.81□□□□□ -1.48
TRIM54-202ENST00000380075 AHNAK2Q8IVF2 5795 aa5.8□□□□□ -1.48
TRIM54-202ENST00000380075 MT3P25713 68 aa5.78□□□□□ -1.48
TRIM54-202ENST00000380075 GPR98Q8WXG9 6306 aa5.76□□□□□ -1.49
TRIM54-202ENST00000380075 KRTAP6-2Q3LI66 62 aa5.73□□□□□ -1.49
TRIM54-202ENST00000380075 KRTAP5-2Q701N4 177 aa5.68□□□□□ -1.5
TRIM54-202ENST00000380075 KRTAP5-10Q6L8G5 202 aa5.57□□□□□ -1.52
TRIM54-202ENST00000380075 OBSCNQ5VST9 7968 aa5.45□□□□□ -1.54
TRIM54-202ENST00000380075 PRM1P04553 51 aa5.4□□□□□ -1.54
TRIM54-202ENST00000380075 KRTAP4-11Q9BYQ6 195 aa5.36□□□□□ -1.55
TRIM54-202ENST00000380075 KRTAP5-7Q6L8G8 165 aa5.25□□□□□ -1.57
TRIM54-202ENST00000380075 KRTAP5-8O75690 187 aa5.17□□□□□ -1.58
TRIM54-202ENST00000380075 KRTAP5-1Q6L8H4 278 aa5.02□□□□□ -1.61
TRIM54-202ENST00000380075 LCE1EQ5T753 118 aa4.96□□□□□ -1.62
TRIM54-202ENST00000380075 MUC5ACP98088 5654 aa4.91□□□□□ -1.62
TRIM54-202ENST00000380075 KRTAP9-9Q9BYP9 154 aa4.78□□□□□ -1.64
TRIM54-202ENST00000380075 MUC5BQ9HC84 5762 aaPredicted RBP4.72□□□□□ -1.65
TRIM54-202ENST00000380075 LCE1BQ5T7P3 118 aa4.68□□□□□ -1.66
TRIM54-202ENST00000380075 KRTAP4-2Q9BYR5 136 aa4.67□□□□□ -1.66
TRIM54-202ENST00000380075 LCE1CQ5T751 118 aa4.62□□□□□ -1.67
TRIM54-202ENST00000380075 AHNAKQ09666 5890 aaKnown RBP4.6□□□□□ -1.67
TRIM54-202ENST00000380075 KRTAP5-6Q6L8G9 129 aaPredicted RBP4.33□□□□□ -1.72
TRIM54-202ENST00000380075 KRTAP21-2Q3LI59 83 aa4.13□□□□□ -1.75
TRIM54-202ENST00000380075 KRTAP5-11Q6L8G4 156 aa4.12□□□□□ -1.75
TRIM54-202ENST00000380075 KRTAP4-12Q9BQ66 201 aa4.08□□□□□ -1.76
TRIM54-202ENST00000380075 LCE1FQ5T754 118 aa3.87□□□□□ -1.79
TRIM54-202ENST00000380075 KRTAP4-4Q9BYR3 166 aa3.62□□□□□ -1.83
TRIM54-202ENST00000380075 PHGR1C9JFL3 82 aa3.56□□□□□ -1.84
TRIM54-202ENST00000380075 KRTAP21-1Q3LI58 79 aa3.42□□□□□ -1.86
TRIM54-202ENST00000380075 MUC19Q7Z5P9 8384 aa3.31□□□□□ -1.88
TRIM54-202ENST00000380075 MUC16Q8WXI7 14507 aa2.28□□□□□ -2.04
Retrieved 77 of 20,778 RNA–protein pairs in 7 ms