RNA–Protein interactions for RNA: ENST00000360718.5

SQSTM1-201, Transcript of sequestosome 1, humanhuman

TSL 1 (best) BASIC

Gene SQSTM1, Length 2,253 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-201ENST00000360718 LCE3CQ5T5A8 94 aa4.73□□□□□ -1.65
SQSTM1-201ENST00000360718 MUC12Q9UKN1 5478 aa4.72□□□□□ -1.65
SQSTM1-201ENST00000360718 SPRR2FQ96RM1 72 aa4.7□□□□□ -1.66
SQSTM1-201ENST00000360718 KRTAP5-9P26371 169 aa4.66□□□□□ -1.66
SQSTM1-201ENST00000360718 MT1LQ93083 61 aa4.64□□□□□ -1.67
SQSTM1-201ENST00000360718 KRTAP19-4Q3LI73 84 aa4.63□□□□□ -1.67
SQSTM1-201ENST00000360718 KRTAP6-3Q3LI67 103 aa4.59□□□□□ -1.67
SQSTM1-201ENST00000360718 KRTAP19-3Q7Z4W3 81 aa4.57□□□□□ -1.68
SQSTM1-201ENST00000360718 MDN1Q9NU22 5596 aa4.56□□□□□ -1.68
SQSTM1-201ENST00000360718 KRTAP4-7Q9BYR0 210 aa4.55□□□□□ -1.68
SQSTM1-201ENST00000360718 MT1GP13640 62 aa4.54□□□□□ -1.68
SQSTM1-201ENST00000360718 LCE1AQ5T7P2 110 aa4.52□□□□□ -1.69
SQSTM1-201ENST00000360718 KRTAP9-7A8MTY7 169 aa4.51□□□□□ -1.69
SQSTM1-201ENST00000360718 LCE5AQ5TCM9 118 aa4.5□□□□□ -1.69
SQSTM1-201ENST00000360718 KRTAP9-6A8MVA2 160 aa4.49□□□□□ -1.69
SQSTM1-201ENST00000360718 MT1MQ8N339 61 aa4.47□□□□□ -1.69
SQSTM1-201ENST00000360718 SPRR2EP22531 72 aa4.47□□□□□ -1.69
SQSTM1-201ENST00000360718 SPRR2BP35325 72 aa4.47□□□□□ -1.69
SQSTM1-201ENST00000360718 SPRR2AP35326 72 aa4.47□□□□□ -1.69
SQSTM1-201ENST00000360718 KRTAP4-3Q9BYR4 195 aa4.45□□□□□ -1.7
SQSTM1-201ENST00000360718 KRTAP2-3P0C7H8 128 aa4.4□□□□□ -1.71
SQSTM1-201ENST00000360718 KRTAP2-4Q9BYR9 128 aa4.4□□□□□ -1.71
SQSTM1-201ENST00000360718 KRTAP2-1Q9BYU5 128 aa4.4□□□□□ -1.71
SQSTM1-201ENST00000360718 DSTQ03001 7570 aaKnown RBP4.35□□□□□ -1.71
SQSTM1-201ENST00000360718 NEBP20929 6669 aa4.31□□□□□ -1.72
SQSTM1-201ENST00000360718 SPRR2DP22532 72 aa4.3□□□□□ -1.72
SQSTM1-201ENST00000360718 LOC100996750A0A140TA64 210 aa4.28□□□□□ -1.72
SQSTM1-201ENST00000360718 LCE3BQ5TA77 95 aa4.14□□□□□ -1.75
SQSTM1-201ENST00000360718 KRTAP5-5Q701N2 237 aaPredicted RBP4.05□□□□□ -1.76
SQSTM1-201ENST00000360718 KRTAP20-1Q3LI63 56 aa3.97□□□□□ -1.77
SQSTM1-201ENST00000360718 MT1AP04731 61 aa3.95□□□□□ -1.78
SQSTM1-201ENST00000360718 KRTAP6-1Q3LI64 71 aa3.93□□□□□ -1.78
SQSTM1-201ENST00000360718 KRTAP2-2Q9BYT5 123 aa3.93□□□□□ -1.78
SQSTM1-201ENST00000360718 KRTAP12-4P60329 112 aa3.9□□□□□ -1.79
SQSTM1-201ENST00000360718 KRTAP5-4Q6L8H1 288 aa3.88□□□□□ -1.79
SQSTM1-201ENST00000360718 SYNE1Q8NF91 8797 aaKnown RBP3.86□□□□□ -1.79
SQSTM1-201ENST00000360718 LCE4AQ5TA78 99 aa3.81□□□□□ -1.8
SQSTM1-201ENST00000360718 KRTAP4-9Q9BYQ8 210 aa3.77□□□□□ -1.81
SQSTM1-201ENST00000360718 MT4P47944 62 aa3.77□□□□□ -1.81
SQSTM1-201ENST00000360718 KRTAP9-4Q9BYQ2 154 aa3.75□□□□□ -1.81
SQSTM1-201ENST00000360718 KRTAP4-6Q9BYQ5 205 aa3.75□□□□□ -1.81
SQSTM1-201ENST00000360718 LCE1DQ5T752 114 aa3.72□□□□□ -1.81
SQSTM1-201ENST00000360718 HMCN1Q96RW7 5635 aa3.67□□□□□ -1.82
SQSTM1-201ENST00000360718 LCE3DQ9BYE3 92 aa3.66□□□□□ -1.82
SQSTM1-201ENST00000360718 KRTAP20-2Q3LI61 65 aa3.64□□□□□ -1.83
SQSTM1-201ENST00000360718 KRTAP6-2Q3LI66 62 aa3.63□□□□□ -1.83
SQSTM1-201ENST00000360718 LCE3EQ5T5B0 92 aa3.63□□□□□ -1.83
SQSTM1-201ENST00000360718 MT3P25713 68 aa3.6□□□□□ -1.83
SQSTM1-201ENST00000360718 KRTAP9-9Q9BYP9 154 aa3.53□□□□□ -1.85
SQSTM1-201ENST00000360718 KRTAP5-3Q6L8H2 238 aa3.52□□□□□ -1.85
SQSTM1-201ENST00000360718 KRTAP5-2Q701N4 177 aa3.51□□□□□ -1.85
SQSTM1-201ENST00000360718 LCE1FQ5T754 118 aa3.43□□□□□ -1.86
SQSTM1-201ENST00000360718 OBSCNQ5VST9 7968 aa3.43□□□□□ -1.86
SQSTM1-201ENST00000360718 PRM1P04553 51 aa3.42□□□□□ -1.86
SQSTM1-201ENST00000360718 AHNAK2Q8IVF2 5795 aa3.25□□□□□ -1.89
SQSTM1-201ENST00000360718 KRTAP4-11Q9BYQ6 195 aa3.17□□□□□ -1.9
SQSTM1-201ENST00000360718 LCE1EQ5T753 118 aa3.12□□□□□ -1.91
SQSTM1-201ENST00000360718 KRTAP5-10Q6L8G5 202 aa3.12□□□□□ -1.91
SQSTM1-201ENST00000360718 KRTAP5-8O75690 187 aa3.07□□□□□ -1.92
SQSTM1-201ENST00000360718 KRTAP5-1Q6L8H4 278 aa3.07□□□□□ -1.92
SQSTM1-201ENST00000360718 GPR98Q8WXG9 6306 aa2.98□□□□□ -1.93
SQSTM1-201ENST00000360718 LCE1BQ5T7P3 118 aa2.94□□□□□ -1.94
SQSTM1-201ENST00000360718 KRTAP4-2Q9BYR5 136 aa2.94□□□□□ -1.94
SQSTM1-201ENST00000360718 KRTAP5-7Q6L8G8 165 aa2.93□□□□□ -1.94
SQSTM1-201ENST00000360718 MUC5ACP98088 5654 aa2.92□□□□□ -1.94
SQSTM1-201ENST00000360718 LCE1CQ5T751 118 aa2.9□□□□□ -1.94
SQSTM1-201ENST00000360718 KRTAP4-12Q9BQ66 201 aa2.82□□□□□ -1.96
SQSTM1-201ENST00000360718 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.7□□□□□ -1.98
SQSTM1-201ENST00000360718 MUC5BQ9HC84 5762 aaPredicted RBP2.65□□□□□ -1.99
SQSTM1-201ENST00000360718 KRTAP21-2Q3LI59 83 aa2.58□□□□□ -2
SQSTM1-201ENST00000360718 KRTAP5-11Q6L8G4 156 aa2.56□□□□□ -2
SQSTM1-201ENST00000360718 AHNAKQ09666 5890 aaKnown RBP2.42□□□□□ -2.02
SQSTM1-201ENST00000360718 KRTAP4-4Q9BYR3 166 aa2.33□□□□□ -2.04
SQSTM1-201ENST00000360718 KRTAP21-1Q3LI58 79 aa2.22□□□□□ -2.05
SQSTM1-201ENST00000360718 PHGR1C9JFL3 82 aa2.21□□□□□ -2.06
SQSTM1-201ENST00000360718 MUC19Q7Z5P9 8384 aa2.05□□□□□ -2.08
SQSTM1-201ENST00000360718 MUC16Q8WXI7 14507 aa1.41□□□□□ -2.18
Retrieved 77 of 20,778 RNA–protein pairs in 51.6 ms