RNA–Protein interactions for RNA: ENST00000360642.7

CLCN3-202, Transcript of chloride voltage-gated channel 3, humanhuman

TSL 2 BASIC

Gene CLCN3, Length 3,208 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCN3-202ENST00000360642 MT1FP04733 61 aa3.04□□□□□ -1.92
CLCN3-202ENST00000360642 KRTAP10-7P60409 375 aaPredicted RBP3.04□□□□□ -1.92
CLCN3-202ENST00000360642 KRTAP10-10P60014 251 aa3.01□□□□□ -1.93
CLCN3-202ENST00000360642 KRTAP19-8Q3LI54 63 aa3□□□□□ -1.93
CLCN3-202ENST00000360642 USH2AO75445 5202 aa2.97□□□□□ -1.93
CLCN3-202ENST00000360642 MT1BP07438 61 aa2.95□□□□□ -1.94
CLCN3-202ENST00000360642 SPRR5A0A1B0GTR4 108 aa2.94□□□□□ -1.94
CLCN3-202ENST00000360642 LCE3AQ5TA76 89 aa2.93□□□□□ -1.94
CLCN3-202ENST00000360642 MT1XP80297 61 aa2.92□□□□□ -1.94
CLCN3-202ENST00000360642 PRO2289Q9P1D8 64 aa2.9□□□□□ -1.95
CLCN3-202ENST00000360642 KMT2DO14686 5537 aa2.89□□□□□ -1.95
CLCN3-202ENST00000360642 KRTAP9-6A8MVA2 160 aa2.88□□□□□ -1.95
CLCN3-202ENST00000360642 KRTAP8-1Q8IUC2 63 aa2.88□□□□□ -1.95
CLCN3-202ENST00000360642 KRTAP5-11Q6L8G4 156 aa2.84□□□□□ -1.95
CLCN3-202ENST00000360642 FSIP2Q5CZC0 6907 aa2.8□□□□□ -1.96
CLCN3-202ENST00000360642 KRTAP12-3P60328 96 aa2.79□□□□□ -1.96
CLCN3-202ENST00000360642 KRTAP6-3Q3LI67 103 aa2.7□□□□□ -1.98
CLCN3-202ENST00000360642 KRTAP19-5Q3LI72 72 aa2.69□□□□□ -1.98
CLCN3-202ENST00000360642 OBSCNQ5VST9 7968 aa2.69□□□□□ -1.98
CLCN3-202ENST00000360642 SSPOA2VEC9 5147 aa2.66□□□□□ -1.98
CLCN3-202ENST00000360642 KRTAP19-7Q3SYF9 63 aa2.61□□□□□ -1.99
CLCN3-202ENST00000360642 MUC12Q9UKN1 5478 aa2.54□□□□□ -2
CLCN3-202ENST00000360642 KRTAP19-6Q3LI70 58 aa2.53□□□□□ -2
CLCN3-202ENST00000360642 FCGBPQ9Y6R7 5405 aaPredicted RBP2.53□□□□□ -2
CLCN3-202ENST00000360642 MT1EP04732 61 aa2.53□□□□□ -2.01
CLCN3-202ENST00000360642 INE1O15225 51 aa2.52□□□□□ -2.01
CLCN3-202ENST00000360642 MT1LQ93083 61 aa2.52□□□□□ -2.01
CLCN3-202ENST00000360642 DSTQ03001 7570 aaKnown RBP2.5□□□□□ -2.01
CLCN3-202ENST00000360642 KRTAP2-3P0C7H8 128 aa2.46□□□□□ -2.02
CLCN3-202ENST00000360642 KRTAP2-4Q9BYR9 128 aa2.46□□□□□ -2.02
CLCN3-202ENST00000360642 KRTAP2-1Q9BYU5 128 aa2.46□□□□□ -2.02
CLCN3-202ENST00000360642 KRTAP4-3Q9BYR4 195 aa2.45□□□□□ -2.02
CLCN3-202ENST00000360642 MACF1Q9UPN3 7388 aaKnown RBP2.41□□□□□ -2.02
CLCN3-202ENST00000360642 KRTAP5-1Q6L8H4 278 aa2.4□□□□□ -2.03
CLCN3-202ENST00000360642 CRCT1Q9UGL9 99 aa2.39□□□□□ -2.03
CLCN3-202ENST00000360642 SYNE2Q8WXH0 6885 aaKnown RBP2.39□□□□□ -2.03
CLCN3-202ENST00000360642 KRTAP19-3Q7Z4W3 81 aa2.36□□□□□ -2.03
CLCN3-202ENST00000360642 MT1GP13640 62 aa2.36□□□□□ -2.03
CLCN3-202ENST00000360642 MT1MQ8N339 61 aa2.36□□□□□ -2.03
CLCN3-202ENST00000360642 SYNE1Q8NF91 8797 aaKnown RBP2.34□□□□□ -2.04
CLCN3-202ENST00000360642 MDN1Q9NU22 5596 aa2.3□□□□□ -2.04
CLCN3-202ENST00000360642 SPRR2FQ96RM1 72 aa2.29□□□□□ -2.04
CLCN3-202ENST00000360642 KRTAP5-5Q701N2 237 aaPredicted RBP2.28□□□□□ -2.04
CLCN3-202ENST00000360642 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.25□□□□□ -2.05
CLCN3-202ENST00000360642 KRTAP5-9P26371 169 aa2.17□□□□□ -2.06
CLCN3-202ENST00000360642 KRTAP12-4P60329 112 aa2.17□□□□□ -2.06
CLCN3-202ENST00000360642 MUC19Q7Z5P9 8384 aa2.15□□□□□ -2.07
CLCN3-202ENST00000360642 KRTAP6-1Q3LI64 71 aa2.13□□□□□ -2.07
CLCN3-202ENST00000360642 MT1AP04731 61 aa2.12□□□□□ -2.07
CLCN3-202ENST00000360642 SPRR2EP22531 72 aa2.07□□□□□ -2.08
CLCN3-202ENST00000360642 SPRR2BP35325 72 aa2.07□□□□□ -2.08
CLCN3-202ENST00000360642 SPRR2AP35326 72 aa2.07□□□□□ -2.08
CLCN3-202ENST00000360642 KRTAP4-4Q9BYR3 166 aa2.06□□□□□ -2.08
CLCN3-202ENST00000360642 KRTAP5-4Q6L8H1 288 aa2□□□□□ -2.09
CLCN3-202ENST00000360642 SPRR2DP22532 72 aa1.98□□□□□ -2.09
CLCN3-202ENST00000360642 NEBP20929 6669 aa1.98□□□□□ -2.09
CLCN3-202ENST00000360642 LCE1CQ5T751 118 aa1.96□□□□□ -2.1
CLCN3-202ENST00000360642 LCE1BQ5T7P3 118 aa1.96□□□□□ -2.1
CLCN3-202ENST00000360642 KRTAP6-2Q3LI66 62 aa1.91□□□□□ -2.1
CLCN3-202ENST00000360642 PRM1P04553 51 aa1.88□□□□□ -2.11
CLCN3-202ENST00000360642 KRTAP5-7Q6L8G8 165 aa1.87□□□□□ -2.11
CLCN3-202ENST00000360642 KRTAP20-1Q3LI63 56 aa1.85□□□□□ -2.11
CLCN3-202ENST00000360642 MT4P47944 62 aa1.81□□□□□ -2.12
CLCN3-202ENST00000360642 HMCN1Q96RW7 5635 aa1.77□□□□□ -2.13
CLCN3-202ENST00000360642 KRTAP5-2Q701N4 177 aa1.76□□□□□ -2.13
CLCN3-202ENST00000360642 KRTAP20-2Q3LI61 65 aa1.74□□□□□ -2.13
CLCN3-202ENST00000360642 GPR98Q8WXG9 6306 aa1.63□□□□□ -2.15
CLCN3-202ENST00000360642 MUC5ACP98088 5654 aa1.62□□□□□ -2.15
CLCN3-202ENST00000360642 KRTAP5-10Q6L8G5 202 aa1.51□□□□□ -2.17
CLCN3-202ENST00000360642 AHNAK2Q8IVF2 5795 aa1.5□□□□□ -2.17
CLCN3-202ENST00000360642 KRTAP21-2Q3LI59 83 aa1.47□□□□□ -2.17
CLCN3-202ENST00000360642 KRTAP5-8O75690 187 aa1.4□□□□□ -2.19
CLCN3-202ENST00000360642 MUC5BQ9HC84 5762 aaPredicted RBP1.38□□□□□ -2.19
CLCN3-202ENST00000360642 AHNAKQ09666 5890 aaKnown RBP1.22□□□□□ -2.21
CLCN3-202ENST00000360642 KRTAP21-1Q3LI58 79 aa1.2□□□□□ -2.22
CLCN3-202ENST00000360642 PHGR1C9JFL3 82 aa1.11□□□□□ -2.23
CLCN3-202ENST00000360642 MUC16Q8WXI7 14507 aa0.74□□□□□ -2.29
Retrieved 77 of 20,778 RNA–protein pairs in 193.1 ms