RNA–Protein interactions for RNA: ENST00000360046.9

HOXA4-201, Transcript of homeobox A4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXA4, Length 1,747 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA4-201ENST00000360046 MT1EP04732 61 aa8□□□□□ -1.13
HOXA4-201ENST00000360046 MDN1Q9NU22 5596 aa7.98□□□□□ -1.13
HOXA4-201ENST00000360046 NDUFAF8A1L188 74 aa7.93□□□□□ -1.14
HOXA4-201ENST00000360046 SPRR2EP22531 72 aa7.81□□□□□ -1.16
HOXA4-201ENST00000360046 SPRR2BP35325 72 aa7.81□□□□□ -1.16
HOXA4-201ENST00000360046 SPRR2AP35326 72 aa7.81□□□□□ -1.16
HOXA4-201ENST00000360046 MT1LQ93083 61 aa7.81□□□□□ -1.16
HOXA4-201ENST00000360046 LUZP6Q538Z0 58 aa7.8□□□□□ -1.16
HOXA4-201ENST00000360046 LCE1AQ5T7P2 110 aa7.78□□□□□ -1.16
HOXA4-201ENST00000360046 KRTAP19-3Q7Z4W3 81 aa7.75□□□□□ -1.17
HOXA4-201ENST00000360046 KRTAP20-1Q3LI63 56 aa7.71□□□□□ -1.18
HOXA4-201ENST00000360046 SPRR5A0A1B0GTR4 108 aa7.69□□□□□ -1.18
HOXA4-201ENST00000360046 A0A0A0MQY5 61 aa7.69□□□□□ -1.18
HOXA4-201ENST00000360046 MT1GP13640 62 aa7.65□□□□□ -1.18
HOXA4-201ENST00000360046 LCE5AQ5TCM9 118 aa7.64□□□□□ -1.19
HOXA4-201ENST00000360046 KRTAP19-4Q3LI73 84 aa7.58□□□□□ -1.2
HOXA4-201ENST00000360046 LCE3CQ5T5A8 94 aa7.56□□□□□ -1.2
HOXA4-201ENST00000360046 MT1MQ8N339 61 aa7.56□□□□□ -1.2
HOXA4-201ENST00000360046 KRTAP2-3P0C7H8 128 aa7.55□□□□□ -1.2
HOXA4-201ENST00000360046 KRTAP2-4Q9BYR9 128 aa7.55□□□□□ -1.2
HOXA4-201ENST00000360046 SPRR2DP22532 72 aa7.53□□□□□ -1.2
HOXA4-201ENST00000360046 KRTAP4-7Q9BYR0 210 aa7.53□□□□□ -1.2
HOXA4-201ENST00000360046 KRTAP4-3Q9BYR4 195 aa7.41□□□□□ -1.22
HOXA4-201ENST00000360046 DSTQ03001 7570 aaKnown RBP7.36□□□□□ -1.23
HOXA4-201ENST00000360046 KRTAP2-2Q9BYT5 123 aa7.33□□□□□ -1.24
HOXA4-201ENST00000360046 KRTAP2-1Q9BYU5 128 aa7.33□□□□□ -1.24
HOXA4-201ENST00000360046 LCE3BQ5TA77 95 aa7.27□□□□□ -1.25
HOXA4-201ENST00000360046 KRTAP9-6A8MVA2 160 aa7.13□□□□□ -1.27
HOXA4-201ENST00000360046 LOC100996750A0A140TA64 210 aa7.09□□□□□ -1.27
HOXA4-201ENST00000360046 KRTAP5-5Q701N2 237 aaPredicted RBP6.81□□□□□ -1.32
HOXA4-201ENST00000360046 KRTAP4-9Q9BYQ8 210 aa6.76□□□□□ -1.33
HOXA4-201ENST00000360046 INE1O15225 51 aa6.67□□□□□ -1.34
HOXA4-201ENST00000360046 KRTAP5-4Q6L8H1 288 aa6.66□□□□□ -1.34
HOXA4-201ENST00000360046 LCE4AQ5TA78 99 aa6.65□□□□□ -1.34
HOXA4-201ENST00000360046 MT1AP04731 61 aa6.63□□□□□ -1.35
HOXA4-201ENST00000360046 LCE1DQ5T752 114 aa6.62□□□□□ -1.35
HOXA4-201ENST00000360046 KRTAP6-1Q3LI64 71 aa6.58□□□□□ -1.36
HOXA4-201ENST00000360046 MT4P47944 62 aa6.57□□□□□ -1.36
HOXA4-201ENST00000360046 SYNE1Q8NF91 8797 aaKnown RBP6.55□□□□□ -1.36
HOXA4-201ENST00000360046 HMCN1Q96RW7 5635 aa6.5□□□□□ -1.37
HOXA4-201ENST00000360046 KRTAP12-4P60329 112 aa6.46□□□□□ -1.38
HOXA4-201ENST00000360046 KRTAP4-6Q9BYQ5 205 aa6.45□□□□□ -1.38
HOXA4-201ENST00000360046 GPR98Q8WXG9 6306 aa6.35□□□□□ -1.39
HOXA4-201ENST00000360046 KRTAP9-4Q9BYQ2 154 aa6.32□□□□□ -1.4
HOXA4-201ENST00000360046 KRTAP20-2Q3LI61 65 aa6.28□□□□□ -1.4
HOXA4-201ENST00000360046 AHNAK2Q8IVF2 5795 aa6.18□□□□□ -1.42
HOXA4-201ENST00000360046 KRTAP6-2Q3LI66 62 aa6.12□□□□□ -1.43
HOXA4-201ENST00000360046 KRTAP5-10Q6L8G5 202 aa6.04□□□□□ -1.44
HOXA4-201ENST00000360046 KRTAP5-3Q6L8H2 238 aa6.03□□□□□ -1.44
HOXA4-201ENST00000360046 MT3P25713 68 aa6.02□□□□□ -1.45
HOXA4-201ENST00000360046 KRTAP5-2Q701N4 177 aa5.96□□□□□ -1.45
HOXA4-201ENST00000360046 KRTAP5-7Q6L8G8 165 aa5.77□□□□□ -1.49
HOXA4-201ENST00000360046 OBSCNQ5VST9 7968 aa5.7□□□□□ -1.5
HOXA4-201ENST00000360046 LCE3DQ9BYE3 92 aa5.64□□□□□ -1.51
HOXA4-201ENST00000360046 KRTAP4-11Q9BYQ6 195 aa5.6□□□□□ -1.51
HOXA4-201ENST00000360046 LCE3EQ5T5B0 92 aa5.45□□□□□ -1.54
HOXA4-201ENST00000360046 KRTAP5-8O75690 187 aa5.42□□□□□ -1.54
HOXA4-201ENST00000360046 KRTAP4-12Q9BQ66 201 aa5.34□□□□□ -1.56
HOXA4-201ENST00000360046 KRTAP9-9Q9BYP9 154 aa5.34□□□□□ -1.56
HOXA4-201ENST00000360046 LCE1EQ5T753 118 aa5.28□□□□□ -1.56
HOXA4-201ENST00000360046 KRTAP5-1Q6L8H4 278 aa5.23□□□□□ -1.57
HOXA4-201ENST00000360046 MUC5ACP98088 5654 aa5.1□□□□□ -1.59
HOXA4-201ENST00000360046 MUC5BQ9HC84 5762 aaPredicted RBP5.06□□□□□ -1.6
HOXA4-201ENST00000360046 LCE1BQ5T7P3 118 aa5.03□□□□□ -1.6
HOXA4-201ENST00000360046 AHNAKQ09666 5890 aaKnown RBP4.99□□□□□ -1.61
HOXA4-201ENST00000360046 KRTAP4-2Q9BYR5 136 aa4.93□□□□□ -1.62
HOXA4-201ENST00000360046 LCE1CQ5T751 118 aa4.92□□□□□ -1.62
HOXA4-201ENST00000360046 PRM1P04553 51 aa4.86□□□□□ -1.63
HOXA4-201ENST00000360046 KRTAP5-6Q6L8G9 129 aaPredicted RBP4.56□□□□□ -1.68
HOXA4-201ENST00000360046 KRTAP5-11Q6L8G4 156 aa4.37□□□□□ -1.71
HOXA4-201ENST00000360046 KRTAP21-2Q3LI59 83 aa4.29□□□□□ -1.72
HOXA4-201ENST00000360046 LCE1FQ5T754 118 aa4.24□□□□□ -1.73
HOXA4-201ENST00000360046 KRTAP4-4Q9BYR3 166 aa3.88□□□□□ -1.79
HOXA4-201ENST00000360046 PHGR1C9JFL3 82 aa3.75□□□□□ -1.81
HOXA4-201ENST00000360046 MUC19Q7Z5P9 8384 aa3.42□□□□□ -1.86
HOXA4-201ENST00000360046 KRTAP21-1Q3LI58 79 aa3.1□□□□□ -1.91
HOXA4-201ENST00000360046 MUC16Q8WXI7 14507 aa2.4□□□□□ -2.03
Retrieved 77 of 20,778 RNA–protein pairs in 6.7 ms