RNA–Protein interactions for RNA: ENST00000357475.8

SSBP3-202, Transcript of single stranded DNA binding protein 3, humanhuman

TSL 1 (best) BASIC

Gene SSBP3, Length 1,533 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP3-202ENST00000357475 PP632Q6XCG6 107 aa9.15□□□□□ -0.95
SSBP3-202ENST00000357475 KRTAP19-3Q7Z4W3 81 aa9.1□□□□□ -0.95
SSBP3-202ENST00000357475 MT1LQ93083 61 aa9.08□□□□□ -0.96
SSBP3-202ENST00000357475 KRTAP20-1Q3LI63 56 aa9.05□□□□□ -0.96
SSBP3-202ENST00000357475 LCE5AQ5TCM9 118 aa9.02□□□□□ -0.97
SSBP3-202ENST00000357475 PRAC1Q96KF2 57 aa8.97□□□□□ -0.97
SSBP3-202ENST00000357475 SPRR2DP22532 72 aa8.94□□□□□ -0.98
SSBP3-202ENST00000357475 MT1GP13640 62 aa8.93□□□□□ -0.98
SSBP3-202ENST00000357475 KRTAP15-1Q3LI76 137 aa8.88□□□□□ -0.99
SSBP3-202ENST00000357475 MT1MQ8N339 61 aa8.85□□□□□ -0.99
SSBP3-202ENST00000357475 KTN1-AS1Q86SY8 53 aa8.79□□□□□ -1
SSBP3-202ENST00000357475 KRTAP4-7Q9BYR0 210 aa8.79□□□□□ -1
SSBP3-202ENST00000357475 KRTAP4-3Q9BYR4 195 aa8.73□□□□□ -1.01
SSBP3-202ENST00000357475 KRTAP2-3P0C7H8 128 aa8.7□□□□□ -1.02
SSBP3-202ENST00000357475 KRTAP2-4Q9BYR9 128 aa8.7□□□□□ -1.02
SSBP3-202ENST00000357475 DSTQ03001 7570 aaKnown RBP8.65□□□□□ -1.02
SSBP3-202ENST00000357475 LCE3BQ5TA77 95 aa8.64□□□□□ -1.03
SSBP3-202ENST00000357475 LCE3CQ5T5A8 94 aa8.59□□□□□ -1.03
SSBP3-202ENST00000357475 KRTAP19-4Q3LI73 84 aa8.56□□□□□ -1.04
SSBP3-202ENST00000357475 KRTAP2-2Q9BYT5 123 aa8.43□□□□□ -1.06
SSBP3-202ENST00000357475 KRTAP2-1Q9BYU5 128 aa8.43□□□□□ -1.06
SSBP3-202ENST00000357475 SVIPQ8NHG7 77 aa8.34□□□□□ -1.07
SSBP3-202ENST00000357475 LOC100996750A0A140TA64 210 aa8.29□□□□□ -1.08
SSBP3-202ENST00000357475 KRTAP9-6A8MVA2 160 aa8.19□□□□□ -1.1
SSBP3-202ENST00000357475 KRTAP5-5Q701N2 237 aaPredicted RBP8.05□□□□□ -1.12
SSBP3-202ENST00000357475 KRTAP4-6Q9BYQ5 205 aa8.02□□□□□ -1.13
SSBP3-202ENST00000357475 KRTAP5-4Q6L8H1 288 aa7.95□□□□□ -1.14
SSBP3-202ENST00000357475 SPRR5A0A1B0GTR4 108 aa7.93□□□□□ -1.14
SSBP3-202ENST00000357475 KRTAP4-9Q9BYQ8 210 aa7.91□□□□□ -1.14
SSBP3-202ENST00000357475 LCE4AQ5TA78 99 aa7.88□□□□□ -1.15
SSBP3-202ENST00000357475 GPR98Q8WXG9 6306 aa7.84□□□□□ -1.15
SSBP3-202ENST00000357475 MT4P47944 62 aa7.81□□□□□ -1.16
SSBP3-202ENST00000357475 LCE1DQ5T752 114 aa7.78□□□□□ -1.16
SSBP3-202ENST00000357475 MT1AP04731 61 aa7.7□□□□□ -1.18
SSBP3-202ENST00000357475 KRTAP6-1Q3LI64 71 aa7.68□□□□□ -1.18
SSBP3-202ENST00000357475 HMCN1Q96RW7 5635 aa7.67□□□□□ -1.18
SSBP3-202ENST00000357475 SYNE1Q8NF91 8797 aaKnown RBP7.65□□□□□ -1.18
SSBP3-202ENST00000357475 KRTAP12-4P60329 112 aa7.54□□□□□ -1.2
SSBP3-202ENST00000357475 KRTAP20-2Q3LI61 65 aa7.47□□□□□ -1.21
SSBP3-202ENST00000357475 KRTAP9-4Q9BYQ2 154 aa7.37□□□□□ -1.23
SSBP3-202ENST00000357475 LUZP6Q538Z0 58 aa7.25□□□□□ -1.25
SSBP3-202ENST00000357475 KRTAP5-3Q6L8H2 238 aa7.23□□□□□ -1.25
SSBP3-202ENST00000357475 AHNAK2Q8IVF2 5795 aa7.2□□□□□ -1.26
SSBP3-202ENST00000357475 KRTAP6-2Q3LI66 62 aa7.17□□□□□ -1.26
SSBP3-202ENST00000357475 KRTAP5-2Q701N4 177 aa7.11□□□□□ -1.27
SSBP3-202ENST00000357475 KRTAP5-10Q6L8G5 202 aa7.1□□□□□ -1.27
SSBP3-202ENST00000357475 MT3P25713 68 aa6.97□□□□□ -1.29
SSBP3-202ENST00000357475 KRTAP5-7Q6L8G8 165 aa6.86□□□□□ -1.31
SSBP3-202ENST00000357475 KRTAP4-12Q9BQ66 201 aa6.79□□□□□ -1.32
SSBP3-202ENST00000357475 KRTAP9-9Q9BYP9 154 aa6.77□□□□□ -1.33
SSBP3-202ENST00000357475 NDUFAF8A1L188 74 aa6.74□□□□□ -1.33
SSBP3-202ENST00000357475 OBSCNQ5VST9 7968 aa6.64□□□□□ -1.35
SSBP3-202ENST00000357475 KRTAP4-11Q9BYQ6 195 aa6.6□□□□□ -1.35
SSBP3-202ENST00000357475 KRTAP5-8O75690 187 aa6.4□□□□□ -1.39
SSBP3-202ENST00000357475 LCE3DQ9BYE3 92 aa6.33□□□□□ -1.4
SSBP3-202ENST00000357475 KRTAP5-1Q6L8H4 278 aa6.25□□□□□ -1.41
SSBP3-202ENST00000357475 KRTAP4-2Q9BYR5 136 aa6.24□□□□□ -1.41
SSBP3-202ENST00000357475 LCE1EQ5T753 118 aa6.19□□□□□ -1.42
SSBP3-202ENST00000357475 LCE3EQ5T5B0 92 aa6.08□□□□□ -1.44
SSBP3-202ENST00000357475 MUC5ACP98088 5654 aa6.05□□□□□ -1.44
SSBP3-202ENST00000357475 AHNAKQ09666 5890 aaKnown RBP6.02□□□□□ -1.45
SSBP3-202ENST00000357475 MUC5BQ9HC84 5762 aaPredicted RBP5.96□□□□□ -1.45
SSBP3-202ENST00000357475 H3BS24 57 aa5.89□□□□□ -1.47
SSBP3-202ENST00000357475 LCE1BQ5T7P3 118 aa5.86□□□□□ -1.47
SSBP3-202ENST00000357475 LCE1CQ5T751 118 aa5.77□□□□□ -1.49
SSBP3-202ENST00000357475 A0A0A0MQY5 61 aa5.61□□□□□ -1.51
SSBP3-202ENST00000357475 INE1O15225 51 aa5.43□□□□□ -1.54
SSBP3-202ENST00000357475 KRTAP5-6Q6L8G9 129 aaPredicted RBP5.34□□□□□ -1.55
SSBP3-202ENST00000357475 KRTAP5-11Q6L8G4 156 aa5.16□□□□□ -1.58
SSBP3-202ENST00000357475 PRM1P04553 51 aa5.07□□□□□ -1.6
SSBP3-202ENST00000357475 KRTAP21-2Q3LI59 83 aa5.04□□□□□ -1.6
SSBP3-202ENST00000357475 LCE1FQ5T754 118 aa4.77□□□□□ -1.65
SSBP3-202ENST00000357475 KRTAP4-4Q9BYR3 166 aa4.57□□□□□ -1.68
SSBP3-202ENST00000357475 PHGR1C9JFL3 82 aa4.45□□□□□ -1.7
SSBP3-202ENST00000357475 MUC19Q7Z5P9 8384 aa4□□□□□ -1.77
SSBP3-202ENST00000357475 KRTAP21-1Q3LI58 79 aa3.14□□□□□ -1.91
SSBP3-202ENST00000357475 MUC16Q8WXI7 14507 aa2.85□□□□□ -1.95
Retrieved 77 of 20,778 RNA–protein pairs in 55.7 ms