RNA–Protein interactions for RNA: ENST00000344921.10

SMARCB1-202, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1, humanhuman

TSL 2 BASIC

Gene SMARCB1, Length 1,728 nt, Biotype protein coding, Subcellular localisation Cytosol, Exosome, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCB1-202ENST00000344921 LCE3AQ5TA76 89 aa7.75□□□□□ -1.17
SMARCB1-202ENST00000344921 KRTAP19-5Q3LI72 72 aa7.72□□□□□ -1.17
SMARCB1-202ENST00000344921 KRTAP20-1Q3LI63 56 aa7.71□□□□□ -1.18
SMARCB1-202ENST00000344921 MT1EP04732 61 aa7.69□□□□□ -1.18
SMARCB1-202ENST00000344921 SPRR2DP22532 72 aa7.69□□□□□ -1.18
SMARCB1-202ENST00000344921 KRTAP2-3P0C7H8 128 aa7.61□□□□□ -1.19
SMARCB1-202ENST00000344921 KRTAP2-4Q9BYR9 128 aa7.61□□□□□ -1.19
SMARCB1-202ENST00000344921 NDUFAF8A1L188 74 aa7.58□□□□□ -1.2
SMARCB1-202ENST00000344921 PP632Q6XCG6 107 aa7.58□□□□□ -1.2
SMARCB1-202ENST00000344921 KRTAP19-3Q7Z4W3 81 aa7.56□□□□□ -1.2
SMARCB1-202ENST00000344921 LCE5AQ5TCM9 118 aa7.51□□□□□ -1.21
SMARCB1-202ENST00000344921 KRTAP12-3P60328 96 aa7.46□□□□□ -1.22
SMARCB1-202ENST00000344921 MT1GP13640 62 aa7.44□□□□□ -1.22
SMARCB1-202ENST00000344921 LCE3BQ5TA77 95 aa7.44□□□□□ -1.22
SMARCB1-202ENST00000344921 MT1LQ93083 61 aa7.42□□□□□ -1.22
SMARCB1-202ENST00000344921 KRTAP2-2Q9BYT5 123 aa7.39□□□□□ -1.23
SMARCB1-202ENST00000344921 KRTAP2-1Q9BYU5 128 aa7.39□□□□□ -1.23
SMARCB1-202ENST00000344921 KRTAP23-1A1A580 65 aa7.38□□□□□ -1.23
SMARCB1-202ENST00000344921 MT1MQ8N339 61 aa7.3□□□□□ -1.24
SMARCB1-202ENST00000344921 DSTQ03001 7570 aaKnown RBP7.24□□□□□ -1.25
SMARCB1-202ENST00000344921 LUZP6Q538Z0 58 aa7.21□□□□□ -1.25
SMARCB1-202ENST00000344921 KRTAP4-3Q9BYR4 195 aa7.13□□□□□ -1.27
SMARCB1-202ENST00000344921 KRTAP4-7Q9BYR0 210 aa7.1□□□□□ -1.27
SMARCB1-202ENST00000344921 SPRR5A0A1B0GTR4 108 aa7.04□□□□□ -1.28
SMARCB1-202ENST00000344921 KRTAP19-4Q3LI73 84 aa7.01□□□□□ -1.29
SMARCB1-202ENST00000344921 A0A0A0MQY5 61 aa6.95□□□□□ -1.3
SMARCB1-202ENST00000344921 LCE3CQ5T5A8 94 aa6.9□□□□□ -1.31
SMARCB1-202ENST00000344921 KRTAP4-9Q9BYQ8 210 aa6.82□□□□□ -1.32
SMARCB1-202ENST00000344921 LCE4AQ5TA78 99 aa6.79□□□□□ -1.32
SMARCB1-202ENST00000344921 LOC100996750A0A140TA64 210 aa6.71□□□□□ -1.34
SMARCB1-202ENST00000344921 MT4P47944 62 aa6.7□□□□□ -1.34
SMARCB1-202ENST00000344921 LCE1DQ5T752 114 aa6.69□□□□□ -1.34
SMARCB1-202ENST00000344921 KRTAP5-4Q6L8H1 288 aa6.69□□□□□ -1.34
SMARCB1-202ENST00000344921 KRTAP5-5Q701N2 237 aaPredicted RBP6.62□□□□□ -1.35
SMARCB1-202ENST00000344921 KRTAP4-6Q9BYQ5 205 aa6.52□□□□□ -1.37
SMARCB1-202ENST00000344921 HMCN1Q96RW7 5635 aa6.5□□□□□ -1.37
SMARCB1-202ENST00000344921 KRTAP9-6A8MVA2 160 aa6.46□□□□□ -1.38
SMARCB1-202ENST00000344921 KRTAP12-4P60329 112 aa6.42□□□□□ -1.38
SMARCB1-202ENST00000344921 INE1O15225 51 aa6.37□□□□□ -1.39
SMARCB1-202ENST00000344921 KRTAP20-2Q3LI61 65 aa6.33□□□□□ -1.4
SMARCB1-202ENST00000344921 MT1AP04731 61 aa6.31□□□□□ -1.4
SMARCB1-202ENST00000344921 SYNE1Q8NF91 8797 aaKnown RBP6.3□□□□□ -1.4
SMARCB1-202ENST00000344921 KRTAP6-1Q3LI64 71 aa6.27□□□□□ -1.41
SMARCB1-202ENST00000344921 KRTAP5-3Q6L8H2 238 aa6.1□□□□□ -1.43
SMARCB1-202ENST00000344921 KRTAP9-4Q9BYQ2 154 aa6.08□□□□□ -1.44
SMARCB1-202ENST00000344921 AHNAK2Q8IVF2 5795 aa6.07□□□□□ -1.44
SMARCB1-202ENST00000344921 GPR98Q8WXG9 6306 aa6.04□□□□□ -1.44
SMARCB1-202ENST00000344921 KRTAP5-10Q6L8G5 202 aa5.97□□□□□ -1.45
SMARCB1-202ENST00000344921 KRTAP5-2Q701N4 177 aa5.93□□□□□ -1.46
SMARCB1-202ENST00000344921 KRTAP6-2Q3LI66 62 aa5.92□□□□□ -1.46
SMARCB1-202ENST00000344921 MT3P25713 68 aa5.79□□□□□ -1.48
SMARCB1-202ENST00000344921 KRTAP4-11Q9BYQ6 195 aa5.68□□□□□ -1.5
SMARCB1-202ENST00000344921 KRTAP5-7Q6L8G8 165 aa5.68□□□□□ -1.5
SMARCB1-202ENST00000344921 OBSCNQ5VST9 7968 aa5.56□□□□□ -1.52
SMARCB1-202ENST00000344921 KRTAP5-8O75690 187 aa5.47□□□□□ -1.53
SMARCB1-202ENST00000344921 KRTAP5-1Q6L8H4 278 aa5.26□□□□□ -1.57
SMARCB1-202ENST00000344921 LCE1EQ5T753 118 aa5.18□□□□□ -1.58
SMARCB1-202ENST00000344921 KRTAP9-9Q9BYP9 154 aa5.15□□□□□ -1.58
SMARCB1-202ENST00000344921 LCE3DQ9BYE3 92 aa5.07□□□□□ -1.6
SMARCB1-202ENST00000344921 MUC5ACP98088 5654 aa5.05□□□□□ -1.6
SMARCB1-202ENST00000344921 MUC5BQ9HC84 5762 aaPredicted RBP4.94□□□□□ -1.62
SMARCB1-202ENST00000344921 LCE1BQ5T7P3 118 aa4.92□□□□□ -1.62
SMARCB1-202ENST00000344921 KRTAP4-2Q9BYR5 136 aa4.85□□□□□ -1.63
SMARCB1-202ENST00000344921 LCE3EQ5T5B0 92 aa4.83□□□□□ -1.64
SMARCB1-202ENST00000344921 LCE1CQ5T751 118 aa4.82□□□□□ -1.64
SMARCB1-202ENST00000344921 AHNAKQ09666 5890 aaKnown RBP4.81□□□□□ -1.64
SMARCB1-202ENST00000344921 PRM1P04553 51 aa4.43□□□□□ -1.7
SMARCB1-202ENST00000344921 KRTAP5-6Q6L8G9 129 aaPredicted RBP4.41□□□□□ -1.7
SMARCB1-202ENST00000344921 KRTAP5-11Q6L8G4 156 aa4.32□□□□□ -1.72
SMARCB1-202ENST00000344921 KRTAP4-12Q9BQ66 201 aa4.31□□□□□ -1.72
SMARCB1-202ENST00000344921 KRTAP21-2Q3LI59 83 aa4.11□□□□□ -1.75
SMARCB1-202ENST00000344921 LCE1FQ5T754 118 aa4.11□□□□□ -1.75
SMARCB1-202ENST00000344921 KRTAP4-4Q9BYR3 166 aa3.75□□□□□ -1.81
SMARCB1-202ENST00000344921 PHGR1C9JFL3 82 aa3.72□□□□□ -1.81
SMARCB1-202ENST00000344921 MUC19Q7Z5P9 8384 aa3.39□□□□□ -1.87
SMARCB1-202ENST00000344921 KRTAP21-1Q3LI58 79 aa2.9□□□□□ -1.95
SMARCB1-202ENST00000344921 MUC16Q8WXI7 14507 aa2.42□□□□□ -2.02
Retrieved 77 of 20,778 RNA–protein pairs in 11.7 ms