RNA–Protein interactions for RNA: ENST00000343599.5

ZNF540-202, Transcript of zinc finger protein 540, humanhuman

APPRIS P3 TSL 5 BASIC

Gene ZNF540, Length 3,073 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-202ENST00000343599 KRTAP19-4Q3LI73 84 aa3.17□□□□□ -1.9
ZNF540-202ENST00000343599 LCE1FQ5T754 118 aa3.16□□□□□ -1.9
ZNF540-202ENST00000343599 KRTAP10-12P60413 245 aa3.07□□□□□ -1.92
ZNF540-202ENST00000343599 LCE3CQ5T5A8 94 aa3□□□□□ -1.93
ZNF540-202ENST00000343599 KRTAP5-7Q6L8G8 165 aa2.99□□□□□ -1.93
ZNF540-202ENST00000343599 SPRR2EP22531 72 aa2.98□□□□□ -1.93
ZNF540-202ENST00000343599 SPRR2BP35325 72 aa2.98□□□□□ -1.93
ZNF540-202ENST00000343599 SPRR2AP35326 72 aa2.98□□□□□ -1.93
ZNF540-202ENST00000343599 TNP1P09430 55 aa2.97□□□□□ -1.93
ZNF540-202ENST00000343599 KRTAP5-4Q6L8H1 288 aa2.95□□□□□ -1.94
ZNF540-202ENST00000343599 SPRR2DP22532 72 aa2.94□□□□□ -1.94
ZNF540-202ENST00000343599 MT1XP80297 61 aa2.94□□□□□ -1.94
ZNF540-202ENST00000343599 LCE3BQ5TA77 95 aa2.93□□□□□ -1.94
ZNF540-202ENST00000343599 KRTAP8-1Q8IUC2 63 aa2.91□□□□□ -1.94
ZNF540-202ENST00000343599 MACF1Q9UPN3 7388 aaKnown RBP2.9□□□□□ -1.94
ZNF540-202ENST00000343599 HMCN1Q96RW7 5635 aa2.89□□□□□ -1.95
ZNF540-202ENST00000343599 KRTAP5-10Q6L8G5 202 aa2.84□□□□□ -1.95
ZNF540-202ENST00000343599 LCE1EQ5T753 118 aa2.83□□□□□ -1.96
ZNF540-202ENST00000343599 SPRR2FQ96RM1 72 aa2.83□□□□□ -1.96
ZNF540-202ENST00000343599 KMT2DO14686 5537 aa2.82□□□□□ -1.96
ZNF540-202ENST00000343599 KRTAP4-8Q9BYQ9 185 aa2.82□□□□□ -1.96
ZNF540-202ENST00000343599 LCE3EQ5T5B0 92 aa2.81□□□□□ -1.96
ZNF540-202ENST00000343599 MT1GP13640 62 aa2.79□□□□□ -1.96
ZNF540-202ENST00000343599 FSIP2Q5CZC0 6907 aa2.76□□□□□ -1.97
ZNF540-202ENST00000343599 KRTAP5-3Q6L8H2 238 aa2.76□□□□□ -1.97
ZNF540-202ENST00000343599 KRTAP19-3Q7Z4W3 81 aa2.76□□□□□ -1.97
ZNF540-202ENST00000343599 LCE3AQ5TA76 89 aa2.76□□□□□ -1.97
ZNF540-202ENST00000343599 MUC5BQ9HC84 5762 aaPredicted RBP2.73□□□□□ -1.97
ZNF540-202ENST00000343599 KRTAP4-8A0A0G2JLE6 195 aa2.72□□□□□ -1.97
ZNF540-202ENST00000343599 GPR98Q8WXG9 6306 aa2.71□□□□□ -1.98
ZNF540-202ENST00000343599 MT1EP04732 61 aa2.7□□□□□ -1.98
ZNF540-202ENST00000343599 KRTAP4-7Q9BYR0 210 aa2.68□□□□□ -1.98
ZNF540-202ENST00000343599 SYNE2Q8WXH0 6885 aaKnown RBP2.67□□□□□ -1.98
ZNF540-202ENST00000343599 LCE1DQ5T752 114 aa2.67□□□□□ -1.98
ZNF540-202ENST00000343599 KRTAP10-7P60409 375 aaPredicted RBP2.67□□□□□ -1.98
ZNF540-202ENST00000343599 MDN1Q9NU22 5596 aa2.65□□□□□ -1.99
ZNF540-202ENST00000343599 AHNAKQ09666 5890 aaKnown RBP2.65□□□□□ -1.99
ZNF540-202ENST00000343599 KRTAP19-7Q3SYF9 63 aa2.65□□□□□ -1.99
ZNF540-202ENST00000343599 MUC12Q9UKN1 5478 aa2.64□□□□□ -1.99
ZNF540-202ENST00000343599 MT1MQ8N339 61 aa2.62□□□□□ -1.99
ZNF540-202ENST00000343599 KRTAP5-5Q701N2 237 aaPredicted RBP2.62□□□□□ -1.99
ZNF540-202ENST00000343599 KRTAP12-3P60328 96 aa2.61□□□□□ -1.99
ZNF540-202ENST00000343599 KRTAP4-12Q9BQ66 201 aa2.6□□□□□ -1.99
ZNF540-202ENST00000343599 AHNAK2Q8IVF2 5795 aa2.58□□□□□ -2
ZNF540-202ENST00000343599 KRTAP5-2Q701N4 177 aa2.58□□□□□ -2
ZNF540-202ENST00000343599 LCE3DQ9BYE3 92 aa2.57□□□□□ -2
ZNF540-202ENST00000343599 MT3P25713 68 aa2.56□□□□□ -2
ZNF540-202ENST00000343599 KRTAP4-2Q9BYR5 136 aa2.55□□□□□ -2
ZNF540-202ENST00000343599 MT1LQ93083 61 aa2.52□□□□□ -2.01
ZNF540-202ENST00000343599 KRTAP20-2Q3LI61 65 aa2.5□□□□□ -2.01
ZNF540-202ENST00000343599 KRTAP5-8O75690 187 aa2.48□□□□□ -2.01
ZNF540-202ENST00000343599 KRTAP4-9Q9BYQ8 210 aa2.48□□□□□ -2.01
ZNF540-202ENST00000343599 KRTAP9-6A8MVA2 160 aa2.45□□□□□ -2.02
ZNF540-202ENST00000343599 KRTAP12-4P60329 112 aa2.43□□□□□ -2.02
ZNF540-202ENST00000343599 KRTAP19-5Q3LI72 72 aa2.38□□□□□ -2.03
ZNF540-202ENST00000343599 KRTAP5-1Q6L8H4 278 aa2.33□□□□□ -2.04
ZNF540-202ENST00000343599 MT1AP04731 61 aa2.31□□□□□ -2.04
ZNF540-202ENST00000343599 KRTAP4-11Q9BYQ6 195 aa2.3□□□□□ -2.04
ZNF540-202ENST00000343599 MT4P47944 62 aa2.22□□□□□ -2.05
ZNF540-202ENST00000343599 MUC5ACP98088 5654 aa2.21□□□□□ -2.06
ZNF540-202ENST00000343599 PRM1P04553 51 aa2.12□□□□□ -2.07
ZNF540-202ENST00000343599 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.03□□□□□ -2.08
ZNF540-202ENST00000343599 MUC19Q7Z5P9 8384 aa2.03□□□□□ -2.08
ZNF540-202ENST00000343599 LCE1CQ5T751 118 aa2.02□□□□□ -2.09
ZNF540-202ENST00000343599 LCE1BQ5T7P3 118 aa2.02□□□□□ -2.09
ZNF540-202ENST00000343599 KRTAP5-11Q6L8G4 156 aa1.97□□□□□ -2.09
ZNF540-202ENST00000343599 KRTAP6-1Q3LI64 71 aa1.94□□□□□ -2.1
ZNF540-202ENST00000343599 KRTAP4-3Q9BYR4 195 aa1.93□□□□□ -2.1
ZNF540-202ENST00000343599 KRTAP4-4Q9BYR3 166 aa1.92□□□□□ -2.1
ZNF540-202ENST00000343599 KRTAP6-2Q3LI66 62 aa1.92□□□□□ -2.1
ZNF540-202ENST00000343599 SYNE1Q8NF91 8797 aaKnown RBP1.85□□□□□ -2.11
ZNF540-202ENST00000343599 OBSCNQ5VST9 7968 aa1.67□□□□□ -2.14
ZNF540-202ENST00000343599 DSTQ03001 7570 aaKnown RBP1.66□□□□□ -2.14
ZNF540-202ENST00000343599 PHGR1C9JFL3 82 aa1.53□□□□□ -2.16
ZNF540-202ENST00000343599 KRTAP21-2Q3LI59 83 aa1.46□□□□□ -2.18
ZNF540-202ENST00000343599 KRTAP21-1Q3LI58 79 aa1.45□□□□□ -2.18
ZNF540-202ENST00000343599 MUC16Q8WXI7 14507 aa1.2□□□□□ -2.22
Retrieved 77 of 20,778 RNA–protein pairs in 37.9 ms