RNA–Protein interactions for RNA: ENST00000340413.6

NUP43-201, Transcript of nucleoporin 43, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NUP43, Length 3,874 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP43-201ENST00000340413 SPRR5A0A1B0GTR4 108 aa2.62□□□□□ -1.99
NUP43-201ENST00000340413 SPRR2EP22531 72 aa2.61□□□□□ -1.99
NUP43-201ENST00000340413 SPRR2BP35325 72 aa2.61□□□□□ -1.99
NUP43-201ENST00000340413 SPRR2AP35326 72 aa2.61□□□□□ -1.99
NUP43-201ENST00000340413 FCGBPQ9Y6R7 5405 aaPredicted RBP2.59□□□□□ -1.99
NUP43-201ENST00000340413 KRTAP4-8A0A0G2JLE6 195 aa2.59□□□□□ -1.99
NUP43-201ENST00000340413 KRTAP4-8Q9BYQ9 185 aa2.59□□□□□ -1.99
NUP43-201ENST00000340413 MT1LQ93083 61 aa2.57□□□□□ -2
NUP43-201ENST00000340413 MT1GP13640 62 aa2.56□□□□□ -2
NUP43-201ENST00000340413 LCE1AQ5T7P2 110 aa2.56□□□□□ -2
NUP43-201ENST00000340413 KRTAP19-3Q7Z4W3 81 aa2.55□□□□□ -2
NUP43-201ENST00000340413 LCE3CQ5T5A8 94 aa2.54□□□□□ -2
NUP43-201ENST00000340413 KRTAP2-3P0C7H8 128 aa2.54□□□□□ -2
NUP43-201ENST00000340413 KRTAP2-4Q9BYR9 128 aa2.54□□□□□ -2
NUP43-201ENST00000340413 SPRR2DP22532 72 aa2.54□□□□□ -2
NUP43-201ENST00000340413 LCE5AQ5TCM9 118 aa2.51□□□□□ -2.01
NUP43-201ENST00000340413 DSTQ03001 7570 aaKnown RBP2.5□□□□□ -2.01
NUP43-201ENST00000340413 MACF1Q9UPN3 7388 aaKnown RBP2.5□□□□□ -2.01
NUP43-201ENST00000340413 NEBP20929 6669 aa2.49□□□□□ -2.01
NUP43-201ENST00000340413 MUC12Q9UKN1 5478 aa2.48□□□□□ -2.01
NUP43-201ENST00000340413 MT1MQ8N339 61 aa2.47□□□□□ -2.01
NUP43-201ENST00000340413 KRTAP2-2Q9BYT5 123 aa2.44□□□□□ -2.02
NUP43-201ENST00000340413 KRTAP2-1Q9BYU5 128 aa2.44□□□□□ -2.02
NUP43-201ENST00000340413 GPR98Q8WXG9 6306 aa2.44□□□□□ -2.02
NUP43-201ENST00000340413 LOC100996750A0A140TA64 210 aa2.43□□□□□ -2.02
NUP43-201ENST00000340413 KRTAP4-6Q9BYQ5 205 aa2.43□□□□□ -2.02
NUP43-201ENST00000340413 LCE3BQ5TA77 95 aa2.37□□□□□ -2.03
NUP43-201ENST00000340413 KRTAP9-4Q9BYQ2 154 aa2.37□□□□□ -2.03
NUP43-201ENST00000340413 OBSCNQ5VST9 7968 aa2.37□□□□□ -2.03
NUP43-201ENST00000340413 KRTAP4-7Q9BYR0 210 aa2.36□□□□□ -2.03
NUP43-201ENST00000340413 LCE4AQ5TA78 99 aa2.35□□□□□ -2.03
NUP43-201ENST00000340413 MDN1Q9NU22 5596 aa2.35□□□□□ -2.03
NUP43-201ENST00000340413 SYNE1Q8NF91 8797 aaKnown RBP2.33□□□□□ -2.04
NUP43-201ENST00000340413 KRTAP5-5Q701N2 237 aaPredicted RBP2.29□□□□□ -2.04
NUP43-201ENST00000340413 KRTAP9-6A8MVA2 160 aa2.29□□□□□ -2.04
NUP43-201ENST00000340413 INE1O15225 51 aa2.29□□□□□ -2.04
NUP43-201ENST00000340413 KRTAP4-3Q9BYR4 195 aa2.28□□□□□ -2.04
NUP43-201ENST00000340413 MT1AP04731 61 aa2.25□□□□□ -2.05
NUP43-201ENST00000340413 MT4P47944 62 aa2.24□□□□□ -2.05
NUP43-201ENST00000340413 HMCN1Q96RW7 5635 aa2.23□□□□□ -2.05
NUP43-201ENST00000340413 KRTAP5-4Q6L8H1 288 aa2.23□□□□□ -2.05
NUP43-201ENST00000340413 KRTAP9-9Q9BYP9 154 aa2.23□□□□□ -2.05
NUP43-201ENST00000340413 LCE1FQ5T754 118 aa2.21□□□□□ -2.06
NUP43-201ENST00000340413 KRTAP4-9Q9BYQ8 210 aa2.21□□□□□ -2.06
NUP43-201ENST00000340413 KRTAP5-3Q6L8H2 238 aa2.19□□□□□ -2.06
NUP43-201ENST00000340413 KRTAP12-4P60329 112 aa2.15□□□□□ -2.06
NUP43-201ENST00000340413 KRTAP6-1Q3LI64 71 aa2.11□□□□□ -2.07
NUP43-201ENST00000340413 MT3P25713 68 aa2.07□□□□□ -2.08
NUP43-201ENST00000340413 KRTAP5-2Q701N4 177 aa2.03□□□□□ -2.08
NUP43-201ENST00000340413 LCE3EQ5T5B0 92 aa2.03□□□□□ -2.08
NUP43-201ENST00000340413 LCE1DQ5T752 114 aa2.03□□□□□ -2.08
NUP43-201ENST00000340413 KRTAP4-12Q9BQ66 201 aa2.02□□□□□ -2.09
NUP43-201ENST00000340413 KRTAP20-2Q3LI61 65 aa2.01□□□□□ -2.09
NUP43-201ENST00000340413 LCE1EQ5T753 118 aa1.99□□□□□ -2.09
NUP43-201ENST00000340413 KRTAP6-2Q3LI66 62 aa1.93□□□□□ -2.1
NUP43-201ENST00000340413 LCE3DQ9BYE3 92 aa1.89□□□□□ -2.11
NUP43-201ENST00000340413 KRTAP4-2Q9BYR5 136 aa1.87□□□□□ -2.11
NUP43-201ENST00000340413 AHNAK2Q8IVF2 5795 aa1.85□□□□□ -2.11
NUP43-201ENST00000340413 KRTAP4-11Q9BYQ6 195 aa1.8□□□□□ -2.12
NUP43-201ENST00000340413 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.8□□□□□ -2.12
NUP43-201ENST00000340413 KRTAP5-7Q6L8G8 165 aa1.77□□□□□ -2.13
NUP43-201ENST00000340413 KRTAP5-8O75690 187 aa1.76□□□□□ -2.13
NUP43-201ENST00000340413 KRTAP5-10Q6L8G5 202 aa1.74□□□□□ -2.13
NUP43-201ENST00000340413 AHNAKQ09666 5890 aaKnown RBP1.73□□□□□ -2.13
NUP43-201ENST00000340413 LCE1BQ5T7P3 118 aa1.7□□□□□ -2.14
NUP43-201ENST00000340413 LCE1CQ5T751 118 aa1.69□□□□□ -2.14
NUP43-201ENST00000340413 KRTAP5-1Q6L8H4 278 aa1.69□□□□□ -2.14
NUP43-201ENST00000340413 MUC5BQ9HC84 5762 aaPredicted RBP1.65□□□□□ -2.15
NUP43-201ENST00000340413 MUC5ACP98088 5654 aa1.62□□□□□ -2.15
NUP43-201ENST00000340413 MUC19Q7Z5P9 8384 aa1.6□□□□□ -2.15
NUP43-201ENST00000340413 PRM1P04553 51 aa1.53□□□□□ -2.17
NUP43-201ENST00000340413 KRTAP5-11Q6L8G4 156 aa1.51□□□□□ -2.17
NUP43-201ENST00000340413 KRTAP21-2Q3LI59 83 aa1.42□□□□□ -2.18
NUP43-201ENST00000340413 PHGR1C9JFL3 82 aa1.36□□□□□ -2.19
NUP43-201ENST00000340413 KRTAP4-4Q9BYR3 166 aa1.32□□□□□ -2.2
NUP43-201ENST00000340413 KRTAP21-1Q3LI58 79 aa1.03□□□□□ -2.24
NUP43-201ENST00000340413 MUC16Q8WXI7 14507 aa0.87□□□□□ -2.27
Retrieved 77 of 20,778 RNA–protein pairs in 113.7 ms