RNA–Protein interactions for RNA: ENST00000339037.3

LINC01116-202, Transcript of long intergenic non-protein coding RNA 1116, humanhuman

TSL 3 BASIC

Gene LINC01116, Length 838 nt, Biotype lincRNA, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01116-202ENST00000339037 SEC61GP60059 68 aa5.71□□□□□ -1.5
LINC01116-202ENST00000339037 ANAPC13Q9BS18 74 aa5.71□□□□□ -1.5
LINC01116-202ENST00000339037 SERP1Q9Y6X1 66 aa5.7□□□□□ -1.5
LINC01116-202ENST00000339037 MT1GP13640 62 aa5.68□□□□□ -1.5
LINC01116-202ENST00000339037 MT4P47944 62 aa5.67□□□□□ -1.5
LINC01116-202ENST00000339037 CCDC179H3BU77 68 aa5.66□□□□□ -1.5
LINC01116-202ENST00000339037 SPINT4Q6UDR6 99 aa5.66□□□□□ -1.5
LINC01116-202ENST00000339037 PP632Q6XCG6 107 aa5.66□□□□□ -1.5
LINC01116-202ENST00000339037 A0A1B0GU33 70 aa5.65□□□□□ -1.5
LINC01116-202ENST00000339037 KRTAP12-1P59990 96 aa5.64□□□□□ -1.51
LINC01116-202ENST00000339037 KRTAP19-5Q3LI72 72 aa5.64□□□□□ -1.51
LINC01116-202ENST00000339037 H7BZZ5 65 aa5.62□□□□□ -1.51
LINC01116-202ENST00000339037 MT1MQ8N339 61 aa5.58□□□□□ -1.52
LINC01116-202ENST00000339037 LCE3CQ5T5A8 94 aa5.53□□□□□ -1.52
LINC01116-202ENST00000339037 MT1LQ93083 61 aa5.52□□□□□ -1.53
LINC01116-202ENST00000339037 KRTAP5-10Q6L8G5 202 aa5.51□□□□□ -1.53
LINC01116-202ENST00000339037 A0A1B0GU69 56 aa5.5□□□□□ -1.53
LINC01116-202ENST00000339037 A8MU10 97 aa5.5□□□□□ -1.53
LINC01116-202ENST00000339037 KRTAP5-4Q6L8H1 288 aa5.5□□□□□ -1.53
LINC01116-202ENST00000339037 SMIM26A0A096LP01 95 aa5.48□□□□□ -1.53
LINC01116-202ENST00000339037 KRTAP4-3Q9BYR4 195 aa5.46□□□□□ -1.54
LINC01116-202ENST00000339037 LCE3AQ5TA76 89 aa5.42□□□□□ -1.54
LINC01116-202ENST00000339037 LCE1EQ5T753 118 aa5.41□□□□□ -1.54
LINC01116-202ENST00000339037 C10orf95Q9H7T3 257 aa5.41□□□□□ -1.54
LINC01116-202ENST00000339037 TMEM258P61165 79 aa5.39□□□□□ -1.55
LINC01116-202ENST00000339037 TNP1P09430 55 aa5.36□□□□□ -1.55
LINC01116-202ENST00000339037 KRTAP5-7Q6L8G8 165 aa5.34□□□□□ -1.55
LINC01116-202ENST00000339037 ATP5EP56381 51 aaPredicted RBP5.33□□□□□ -1.56
LINC01116-202ENST00000339037 PRR15LQ9BU68 103 aa5.27□□□□□ -1.57
LINC01116-202ENST00000339037 LINC01558Q9Y6Z2 57 aa5.23□□□□□ -1.57
LINC01116-202ENST00000339037 KRTAP20-2Q3LI61 65 aa5.22□□□□□ -1.57
LINC01116-202ENST00000339037 KRTAP5-11Q6L8G4 156 aa5.21□□□□□ -1.58
LINC01116-202ENST00000339037 KRTAP12-3P60328 96 aa5.19□□□□□ -1.58
LINC01116-202ENST00000339037 SPRR5A0A1B0GTR4 108 aa5.16□□□□□ -1.58
LINC01116-202ENST00000339037 KRTAP5-5Q701N2 237 aaPredicted RBP5.15□□□□□ -1.59
LINC01116-202ENST00000339037 RPS28P62857 69 aaKnown RBP5.13□□□□□ -1.59
LINC01116-202ENST00000339037 UQCR11O14957 56 aa5.11□□□□□ -1.59
LINC01116-202ENST00000339037 KRTAP12-4P60329 112 aa5.11□□□□□ -1.59
LINC01116-202ENST00000339037 LCE3EQ5T5B0 92 aa5.06□□□□□ -1.6
LINC01116-202ENST00000339037 SYNE1Q8NF91 8797 aaKnown RBP5.05□□□□□ -1.6
LINC01116-202ENST00000339037 Q1T7F1 81 aa5.02□□□□□ -1.61
LINC01116-202ENST00000339037 MIR22HGQ0VDD5 57 aa5□□□□□ -1.61
LINC01116-202ENST00000339037 KRTAP25-1Q3LHN0 102 aa5□□□□□ -1.61
LINC01116-202ENST00000339037 KRTAP9-6A8MVA2 160 aa4.98□□□□□ -1.61
LINC01116-202ENST00000339037 PSPHP1O15172 72 aa4.95□□□□□ -1.62
LINC01116-202ENST00000339037 V9GYY9 64 aa4.94□□□□□ -1.62
LINC01116-202ENST00000339037 K7ERS5 55 aa4.89□□□□□ -1.63
LINC01116-202ENST00000339037 AHNAKQ09666 5890 aaKnown RBP4.85□□□□□ -1.63
LINC01116-202ENST00000339037 KRTAP5-6Q6L8G9 129 aaPredicted RBP4.81□□□□□ -1.64
LINC01116-202ENST00000339037 MUC5BQ9HC84 5762 aaPredicted RBP4.79□□□□□ -1.64
LINC01116-202ENST00000339037 MUC5ACP98088 5654 aa4.79□□□□□ -1.64
LINC01116-202ENST00000339037 KRTAP5-2Q701N4 177 aa4.76□□□□□ -1.65
LINC01116-202ENST00000339037 A6NED7 52 aa4.75□□□□□ -1.65
LINC01116-202ENST00000339037 MT1AP04731 61 aa4.69□□□□□ -1.66
LINC01116-202ENST00000339037 KRTAP6-1Q3LI64 71 aa4.69□□□□□ -1.66
LINC01116-202ENST00000339037 KRTAP5-8O75690 187 aa4.68□□□□□ -1.66
LINC01116-202ENST00000339037 CDC42SE1Q9NRR8 79 aa4.67□□□□□ -1.66
LINC01116-202ENST00000339037 OBSCNQ5VST9 7968 aa4.66□□□□□ -1.66
LINC01116-202ENST00000339037 ROMO1P60602 79 aa4.57□□□□□ -1.68
LINC01116-202ENST00000339037 BRK1Q8WUW1 75 aa4.56□□□□□ -1.68
LINC01116-202ENST00000339037 KRTAP6-2Q3LI66 62 aa4.55□□□□□ -1.68
LINC01116-202ENST00000339037 PRO0628Q9UI54 55 aa4.35□□□□□ -1.71
LINC01116-202ENST00000339037 KRTAP5-1Q6L8H4 278 aa4.33□□□□□ -1.72
LINC01116-202ENST00000339037 PMAIP1Q13794 54 aa4.28□□□□□ -1.72
LINC01116-202ENST00000339037 LCE3DQ9BYE3 92 aa4.27□□□□□ -1.73
LINC01116-202ENST00000339037 LUZP6Q538Z0 58 aa4.06□□□□□ -1.76
LINC01116-202ENST00000339037 KTN1-AS1Q86SY8 53 aa4.06□□□□□ -1.76
LINC01116-202ENST00000339037 KRTAP4-4Q9BYR3 166 aa4.01□□□□□ -1.77
LINC01116-202ENST00000339037 LCE1BQ5T7P3 118 aa3.84□□□□□ -1.79
LINC01116-202ENST00000339037 LCE1CQ5T751 118 aa3.75□□□□□ -1.81
LINC01116-202ENST00000339037 PHGR1C9JFL3 82 aa3.23□□□□□ -1.89
LINC01116-202ENST00000339037 KRTAP21-2Q3LI59 83 aa3.09□□□□□ -1.91
LINC01116-202ENST00000339037 MUC19Q7Z5P9 8384 aa2.9□□□□□ -1.94
LINC01116-202ENST00000339037 INE1O15225 51 aa2.51□□□□□ -2.01
LINC01116-202ENST00000339037 KRTAP21-1Q3LI58 79 aa2.46□□□□□ -2.02
LINC01116-202ENST00000339037 PRM1P04553 51 aa2.35□□□□□ -2.03
LINC01116-202ENST00000339037 MUC16Q8WXI7 14507 aa1.95□□□□□ -2.1
Retrieved 77 of 20,778 RNA–protein pairs in 6.3 ms