RNA–Protein interactions for RNA: ENST00000325307.11

HMGB3-201, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 3,560 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-201ENST00000325307 MT1EP04732 61 aa3.65□□□□□ -1.82
HMGB3-201ENST00000325307 KRTAP6-3Q3LI67 103 aa3.62□□□□□ -1.83
HMGB3-201ENST00000325307 KRTAP5-9P26371 169 aa3.62□□□□□ -1.83
HMGB3-201ENST00000325307 MUC12Q9UKN1 5478 aa3.61□□□□□ -1.83
HMGB3-201ENST00000325307 KRTAP9-7A8MTY7 169 aa3.59□□□□□ -1.83
HMGB3-201ENST00000325307 MT1LQ93083 61 aa3.57□□□□□ -1.84
HMGB3-201ENST00000325307 SPRR2EP22531 72 aa3.53□□□□□ -1.84
HMGB3-201ENST00000325307 SPRR2BP35325 72 aa3.53□□□□□ -1.84
HMGB3-201ENST00000325307 SPRR2AP35326 72 aa3.53□□□□□ -1.84
HMGB3-201ENST00000325307 KRTAP19-3Q7Z4W3 81 aa3.53□□□□□ -1.84
HMGB3-201ENST00000325307 MDN1Q9NU22 5596 aa3.53□□□□□ -1.84
HMGB3-201ENST00000325307 LCE1AQ5T7P2 110 aa3.51□□□□□ -1.85
HMGB3-201ENST00000325307 MT1GP13640 62 aa3.5□□□□□ -1.85
HMGB3-201ENST00000325307 LCE3CQ5T5A8 94 aa3.47□□□□□ -1.85
HMGB3-201ENST00000325307 LCE5AQ5TCM9 118 aa3.47□□□□□ -1.85
HMGB3-201ENST00000325307 KRTAP4-7Q9BYR0 210 aa3.47□□□□□ -1.85
HMGB3-201ENST00000325307 KRTAP19-4Q3LI73 84 aa3.45□□□□□ -1.86
HMGB3-201ENST00000325307 MT1MQ8N339 61 aa3.45□□□□□ -1.86
HMGB3-201ENST00000325307 SPRR2DP22532 72 aa3.41□□□□□ -1.86
HMGB3-201ENST00000325307 KRTAP4-3Q9BYR4 195 aa3.4□□□□□ -1.87
HMGB3-201ENST00000325307 NEBP20929 6669 aa3.39□□□□□ -1.87
HMGB3-201ENST00000325307 KRTAP9-6A8MVA2 160 aa3.37□□□□□ -1.87
HMGB3-201ENST00000325307 DSTQ03001 7570 aaKnown RBP3.33□□□□□ -1.88
HMGB3-201ENST00000325307 KRTAP2-2Q9BYT5 123 aa3.32□□□□□ -1.88
HMGB3-201ENST00000325307 KRTAP2-3P0C7H8 128 aa3.28□□□□□ -1.88
HMGB3-201ENST00000325307 KRTAP2-4Q9BYR9 128 aa3.28□□□□□ -1.88
HMGB3-201ENST00000325307 KRTAP2-1Q9BYU5 128 aa3.28□□□□□ -1.88
HMGB3-201ENST00000325307 LCE3BQ5TA77 95 aa3.27□□□□□ -1.89
HMGB3-201ENST00000325307 LOC100996750A0A140TA64 210 aa3.26□□□□□ -1.89
HMGB3-201ENST00000325307 KRTAP20-1Q3LI63 56 aa3.18□□□□□ -1.9
HMGB3-201ENST00000325307 LCE4AQ5TA78 99 aa3.13□□□□□ -1.91
HMGB3-201ENST00000325307 KRTAP5-5Q701N2 237 aaPredicted RBP3.08□□□□□ -1.92
HMGB3-201ENST00000325307 MT1AP04731 61 aa3.03□□□□□ -1.92
HMGB3-201ENST00000325307 KRTAP6-1Q3LI64 71 aa3.01□□□□□ -1.93
HMGB3-201ENST00000325307 KRTAP5-4Q6L8H1 288 aa2.99□□□□□ -1.93
HMGB3-201ENST00000325307 MT4P47944 62 aa2.98□□□□□ -1.93
HMGB3-201ENST00000325307 SYNE1Q8NF91 8797 aaKnown RBP2.96□□□□□ -1.93
HMGB3-201ENST00000325307 KRTAP4-9Q9BYQ8 210 aa2.96□□□□□ -1.93
HMGB3-201ENST00000325307 KRTAP12-4P60329 112 aa2.95□□□□□ -1.94
HMGB3-201ENST00000325307 LCE1EQ5T753 118 aa2.93□□□□□ -1.94
HMGB3-201ENST00000325307 LCE1DQ5T752 114 aa2.91□□□□□ -1.94
HMGB3-201ENST00000325307 KRTAP4-6Q9BYQ5 205 aa2.91□□□□□ -1.94
HMGB3-201ENST00000325307 KRTAP9-4Q9BYQ2 154 aa2.88□□□□□ -1.95
HMGB3-201ENST00000325307 HMCN1Q96RW7 5635 aa2.85□□□□□ -1.95
HMGB3-201ENST00000325307 KRTAP20-2Q3LI61 65 aa2.83□□□□□ -1.96
HMGB3-201ENST00000325307 KRTAP6-2Q3LI66 62 aa2.8□□□□□ -1.96
HMGB3-201ENST00000325307 KRTAP9-9Q9BYP9 154 aa2.8□□□□□ -1.96
HMGB3-201ENST00000325307 LCE1FQ5T754 118 aa2.79□□□□□ -1.96
HMGB3-201ENST00000325307 MT3P25713 68 aa2.76□□□□□ -1.97
HMGB3-201ENST00000325307 KRTAP5-3Q6L8H2 238 aa2.7□□□□□ -1.98
HMGB3-201ENST00000325307 KRTAP5-2Q701N4 177 aa2.69□□□□□ -1.98
HMGB3-201ENST00000325307 OBSCNQ5VST9 7968 aa2.62□□□□□ -1.99
HMGB3-201ENST00000325307 PRM1P04553 51 aa2.62□□□□□ -1.99
HMGB3-201ENST00000325307 LCE3DQ9BYE3 92 aa2.61□□□□□ -1.99
HMGB3-201ENST00000325307 KRTAP4-12Q9BQ66 201 aa2.6□□□□□ -1.99
HMGB3-201ENST00000325307 AHNAK2Q8IVF2 5795 aa2.56□□□□□ -2
HMGB3-201ENST00000325307 LCE3EQ5T5B0 92 aa2.53□□□□□ -2
HMGB3-201ENST00000325307 KRTAP4-11Q9BYQ6 195 aa2.49□□□□□ -2.01
HMGB3-201ENST00000325307 KRTAP5-10Q6L8G5 202 aa2.44□□□□□ -2.02
HMGB3-201ENST00000325307 GPR98Q8WXG9 6306 aa2.44□□□□□ -2.02
HMGB3-201ENST00000325307 KRTAP5-8O75690 187 aa2.37□□□□□ -2.03
HMGB3-201ENST00000325307 KRTAP5-1Q6L8H4 278 aa2.35□□□□□ -2.03
HMGB3-201ENST00000325307 LCE1BQ5T7P3 118 aa2.32□□□□□ -2.04
HMGB3-201ENST00000325307 KRTAP5-7Q6L8G8 165 aa2.27□□□□□ -2.05
HMGB3-201ENST00000325307 MUC5ACP98088 5654 aa2.25□□□□□ -2.05
HMGB3-201ENST00000325307 KRTAP4-2Q9BYR5 136 aa2.24□□□□□ -2.05
HMGB3-201ENST00000325307 LCE1CQ5T751 118 aa2.23□□□□□ -2.05
HMGB3-201ENST00000325307 MUC5BQ9HC84 5762 aaPredicted RBP2.07□□□□□ -2.08
HMGB3-201ENST00000325307 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.05□□□□□ -2.08
HMGB3-201ENST00000325307 MUC19Q7Z5P9 8384 aa2.05□□□□□ -2.08
HMGB3-201ENST00000325307 AHNAKQ09666 5890 aaKnown RBP1.98□□□□□ -2.09
HMGB3-201ENST00000325307 KRTAP5-11Q6L8G4 156 aa1.97□□□□□ -2.09
HMGB3-201ENST00000325307 KRTAP21-2Q3LI59 83 aa1.95□□□□□ -2.1
HMGB3-201ENST00000325307 KRTAP21-1Q3LI58 79 aa1.82□□□□□ -2.12
HMGB3-201ENST00000325307 KRTAP4-4Q9BYR3 166 aa1.8□□□□□ -2.12
HMGB3-201ENST00000325307 PHGR1C9JFL3 82 aa1.7□□□□□ -2.14
HMGB3-201ENST00000325307 MUC16Q8WXI7 14507 aa1.07□□□□□ -2.24
Retrieved 77 of 20,778 RNA–protein pairs in 81.6 ms