RNA–Protein interactions for RNA: ENST00000324340.13

DDX39A-202, Transcript of DExD-box helicase 39A, humanhuman

TSL 1 (best)

Gene DDX39A, Length 1,355 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX39A-202ENST00000324340 KRTAP12-3P60328 96 aa4.73□□□□□ -1.65
DDX39A-202ENST00000324340 KRTAP19-7Q3SYF9 63 aa4.73□□□□□ -1.65
DDX39A-202ENST00000324340 MUC12Q9UKN1 5478 aa4.72□□□□□ -1.65
DDX39A-202ENST00000324340 NEBP20929 6669 aa4.7□□□□□ -1.66
DDX39A-202ENST00000324340 KRTAP5-9P26371 169 aa4.68□□□□□ -1.66
DDX39A-202ENST00000324340 KRTAP20-1Q3LI63 56 aa4.67□□□□□ -1.66
DDX39A-202ENST00000324340 MT1EP04732 61 aa4.65□□□□□ -1.67
DDX39A-202ENST00000324340 SPRR2FQ96RM1 72 aa4.6□□□□□ -1.67
DDX39A-202ENST00000324340 MT1LQ93083 61 aa4.54□□□□□ -1.68
DDX39A-202ENST00000324340 MDN1Q9NU22 5596 aa4.54□□□□□ -1.68
DDX39A-202ENST00000324340 KRTAP2-3P0C7H8 128 aa4.52□□□□□ -1.69
DDX39A-202ENST00000324340 KRTAP19-4Q3LI73 84 aa4.52□□□□□ -1.69
DDX39A-202ENST00000324340 KRTAP2-4Q9BYR9 128 aa4.52□□□□□ -1.69
DDX39A-202ENST00000324340 KRTAP19-3Q7Z4W3 81 aa4.49□□□□□ -1.69
DDX39A-202ENST00000324340 MT1GP13640 62 aa4.45□□□□□ -1.7
DDX39A-202ENST00000324340 LCE1AQ5T7P2 110 aa4.45□□□□□ -1.7
DDX39A-202ENST00000324340 LCE5AQ5TCM9 118 aa4.44□□□□□ -1.7
DDX39A-202ENST00000324340 SPRR2EP22531 72 aa4.41□□□□□ -1.7
DDX39A-202ENST00000324340 SPRR2BP35325 72 aa4.41□□□□□ -1.7
DDX39A-202ENST00000324340 SPRR2AP35326 72 aa4.41□□□□□ -1.7
DDX39A-202ENST00000324340 LCE3CQ5T5A8 94 aa4.41□□□□□ -1.7
DDX39A-202ENST00000324340 MT1MQ8N339 61 aa4.39□□□□□ -1.71
DDX39A-202ENST00000324340 KRTAP2-2Q9BYT5 123 aa4.37□□□□□ -1.71
DDX39A-202ENST00000324340 KRTAP2-1Q9BYU5 128 aa4.37□□□□□ -1.71
DDX39A-202ENST00000324340 KRTAP4-7Q9BYR0 210 aa4.34□□□□□ -1.71
DDX39A-202ENST00000324340 SPRR2DP22532 72 aa4.27□□□□□ -1.73
DDX39A-202ENST00000324340 KRTAP4-3Q9BYR4 195 aa4.26□□□□□ -1.73
DDX39A-202ENST00000324340 LCE3BQ5TA77 95 aa4.18□□□□□ -1.74
DDX39A-202ENST00000324340 KRTAP9-6A8MVA2 160 aa4.17□□□□□ -1.74
DDX39A-202ENST00000324340 LOC100996750A0A140TA64 210 aa4.09□□□□□ -1.75
DDX39A-202ENST00000324340 DSTQ03001 7570 aaKnown RBP4.01□□□□□ -1.77
DDX39A-202ENST00000324340 KRTAP5-5Q701N2 237 aaPredicted RBP3.99□□□□□ -1.77
DDX39A-202ENST00000324340 KRTAP4-9Q9BYQ8 210 aa3.95□□□□□ -1.78
DDX39A-202ENST00000324340 GPR98Q8WXG9 6306 aa3.93□□□□□ -1.78
DDX39A-202ENST00000324340 MT1AP04731 61 aa3.87□□□□□ -1.79
DDX39A-202ENST00000324340 KRTAP5-4Q6L8H1 288 aa3.87□□□□□ -1.79
DDX39A-202ENST00000324340 LCE1DQ5T752 114 aa3.85□□□□□ -1.79
DDX39A-202ENST00000324340 KRTAP12-4P60329 112 aa3.82□□□□□ -1.8
DDX39A-202ENST00000324340 KRTAP6-1Q3LI64 71 aa3.81□□□□□ -1.8
DDX39A-202ENST00000324340 LCE4AQ5TA78 99 aa3.8□□□□□ -1.8
DDX39A-202ENST00000324340 MT4P47944 62 aa3.75□□□□□ -1.81
DDX39A-202ENST00000324340 HMCN1Q96RW7 5635 aa3.74□□□□□ -1.81
DDX39A-202ENST00000324340 KRTAP5-10Q6L8G5 202 aa3.71□□□□□ -1.82
DDX39A-202ENST00000324340 KRTAP9-4Q9BYQ2 154 aa3.69□□□□□ -1.82
DDX39A-202ENST00000324340 SYNE1Q8NF91 8797 aaKnown RBP3.66□□□□□ -1.82
DDX39A-202ENST00000324340 KRTAP4-6Q9BYQ5 205 aa3.65□□□□□ -1.82
DDX39A-202ENST00000324340 AHNAK2Q8IVF2 5795 aa3.64□□□□□ -1.83
DDX39A-202ENST00000324340 KRTAP20-2Q3LI61 65 aa3.59□□□□□ -1.83
DDX39A-202ENST00000324340 KRTAP5-7Q6L8G8 165 aa3.59□□□□□ -1.83
DDX39A-202ENST00000324340 KRTAP5-3Q6L8H2 238 aa3.56□□□□□ -1.84
DDX39A-202ENST00000324340 KRTAP6-2Q3LI66 62 aa3.52□□□□□ -1.85
DDX39A-202ENST00000324340 MT3P25713 68 aa3.51□□□□□ -1.85
DDX39A-202ENST00000324340 KRTAP5-2Q701N4 177 aa3.5□□□□□ -1.85
DDX39A-202ENST00000324340 LCE3EQ5T5B0 92 aa3.49□□□□□ -1.85
DDX39A-202ENST00000324340 LCE3DQ9BYE3 92 aa3.46□□□□□ -1.86
DDX39A-202ENST00000324340 PRM1P04553 51 aa3.39□□□□□ -1.87
DDX39A-202ENST00000324340 KRTAP4-12Q9BQ66 201 aa3.28□□□□□ -1.88
DDX39A-202ENST00000324340 KRTAP4-11Q9BYQ6 195 aa3.25□□□□□ -1.89
DDX39A-202ENST00000324340 KRTAP5-8O75690 187 aa3.15□□□□□ -1.9
DDX39A-202ENST00000324340 KRTAP9-9Q9BYP9 154 aa3.13□□□□□ -1.91
DDX39A-202ENST00000324340 OBSCNQ5VST9 7968 aa3.13□□□□□ -1.91
DDX39A-202ENST00000324340 LCE1EQ5T753 118 aa3.1□□□□□ -1.91
DDX39A-202ENST00000324340 MUC5ACP98088 5654 aa3.06□□□□□ -1.92
DDX39A-202ENST00000324340 MUC5BQ9HC84 5762 aaPredicted RBP3.04□□□□□ -1.92
DDX39A-202ENST00000324340 KRTAP5-1Q6L8H4 278 aa3.02□□□□□ -1.93
DDX39A-202ENST00000324340 AHNAKQ09666 5890 aaKnown RBP3□□□□□ -1.93
DDX39A-202ENST00000324340 LCE1CQ5T751 118 aa2.88□□□□□ -1.95
DDX39A-202ENST00000324340 LCE1BQ5T7P3 118 aa2.88□□□□□ -1.95
DDX39A-202ENST00000324340 KRTAP4-2Q9BYR5 136 aa2.88□□□□□ -1.95
DDX39A-202ENST00000324340 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.71□□□□□ -1.98
DDX39A-202ENST00000324340 KRTAP5-11Q6L8G4 156 aa2.55□□□□□ -2
DDX39A-202ENST00000324340 KRTAP21-2Q3LI59 83 aa2.52□□□□□ -2.01
DDX39A-202ENST00000324340 LCE1FQ5T754 118 aa2.35□□□□□ -2.03
DDX39A-202ENST00000324340 KRTAP21-1Q3LI58 79 aa2.32□□□□□ -2.04
DDX39A-202ENST00000324340 PHGR1C9JFL3 82 aa2.19□□□□□ -2.06
DDX39A-202ENST00000324340 KRTAP4-4Q9BYR3 166 aa2.18□□□□□ -2.06
DDX39A-202ENST00000324340 MUC19Q7Z5P9 8384 aa1.84□□□□□ -2.12
DDX39A-202ENST00000324340 MUC16Q8WXI7 14507 aa1.39□□□□□ -2.19
Retrieved 78 of 20,778 RNA–protein pairs in 7.2 ms