RNA–Protein interactions for RNA: ENST00000318787.13

HDDC2-201, Transcript of HD domain containing 2, humanhuman

TSL 1 (best)

Gene HDDC2, Length 1,350 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC2-201ENST00000318787 PRR15LQ9BU68 103 aa6.05□□□□□ -1.44
HDDC2-201ENST00000318787 KRTAP19-7Q3SYF9 63 aa6.01□□□□□ -1.45
HDDC2-201ENST00000318787 PCP4P48539 62 aa6□□□□□ -1.45
HDDC2-201ENST00000318787 MT1EP04732 61 aa5.96□□□□□ -1.45
HDDC2-201ENST00000318787 TMEM258P61165 79 aa5.94□□□□□ -1.46
HDDC2-201ENST00000318787 LINC01558Q9Y6Z2 57 aa5.94□□□□□ -1.46
HDDC2-201ENST00000318787 KRTAP19-5Q3LI72 72 aa5.93□□□□□ -1.46
HDDC2-201ENST00000318787 KRTAP19-3Q7Z4W3 81 aa5.92□□□□□ -1.46
HDDC2-201ENST00000318787 DSTQ03001 7570 aaKnown RBP5.9□□□□□ -1.46
HDDC2-201ENST00000318787 TNP1P09430 55 aa5.88□□□□□ -1.47
HDDC2-201ENST00000318787 C10orf95Q9H7T3 257 aa5.87□□□□□ -1.47
HDDC2-201ENST00000318787 UQCR11O14957 56 aa5.83□□□□□ -1.48
HDDC2-201ENST00000318787 LCE3AQ5TA76 89 aa5.82□□□□□ -1.48
HDDC2-201ENST00000318787 MT1GP13640 62 aa5.76□□□□□ -1.49
HDDC2-201ENST00000318787 PP632Q6XCG6 107 aa5.76□□□□□ -1.49
HDDC2-201ENST00000318787 A0A0A0MQY5 61 aa5.75□□□□□ -1.49
HDDC2-201ENST00000318787 MIR22HGQ0VDD5 57 aa5.72□□□□□ -1.49
HDDC2-201ENST00000318787 MT1LQ93083 61 aa5.71□□□□□ -1.5
HDDC2-201ENST00000318787 MT1MQ8N339 61 aa5.68□□□□□ -1.5
HDDC2-201ENST00000318787 PSPHP1O15172 72 aa5.67□□□□□ -1.5
HDDC2-201ENST00000318787 K7ERS5 55 aa5.63□□□□□ -1.51
HDDC2-201ENST00000318787 V9GYY9 64 aa5.62□□□□□ -1.51
HDDC2-201ENST00000318787 GPR98Q8WXG9 6306 aa5.62□□□□□ -1.51
HDDC2-201ENST00000318787 KRTAP4-3Q9BYR4 195 aa5.6□□□□□ -1.51
HDDC2-201ENST00000318787 KRTAP12-3P60328 96 aa5.58□□□□□ -1.52
HDDC2-201ENST00000318787 Q1T7F1 81 aa5.55□□□□□ -1.52
HDDC2-201ENST00000318787 KRTAP25-1Q3LHN0 102 aa5.53□□□□□ -1.52
HDDC2-201ENST00000318787 KRTAP5-6Q6L8G9 129 aaPredicted RBP5.51□□□□□ -1.53
HDDC2-201ENST00000318787 MT4P47944 62 aa5.5□□□□□ -1.53
HDDC2-201ENST00000318787 A6NED7 52 aa5.48□□□□□ -1.53
HDDC2-201ENST00000318787 HMCN1Q96RW7 5635 aa5.46□□□□□ -1.54
HDDC2-201ENST00000318787 KRTAP5-11Q6L8G4 156 aa5.42□□□□□ -1.54
HDDC2-201ENST00000318787 MT3P25713 68 aa5.36□□□□□ -1.55
HDDC2-201ENST00000318787 KRTAP5-4Q6L8H1 288 aa5.36□□□□□ -1.55
HDDC2-201ENST00000318787 CDC42SE1Q9NRR8 79 aa5.32□□□□□ -1.56
HDDC2-201ENST00000318787 AHNAK2Q8IVF2 5795 aa5.3□□□□□ -1.56
HDDC2-201ENST00000318787 LCE1EQ5T753 118 aa5.28□□□□□ -1.56
HDDC2-201ENST00000318787 RPS28P62857 69 aaKnown RBP5.26□□□□□ -1.57
HDDC2-201ENST00000318787 ROMO1P60602 79 aa5.21□□□□□ -1.58
HDDC2-201ENST00000318787 KRTAP5-10Q6L8G5 202 aa5.16□□□□□ -1.58
HDDC2-201ENST00000318787 KRTAP5-5Q701N2 237 aaPredicted RBP5.16□□□□□ -1.58
HDDC2-201ENST00000318787 LCE3CQ5T5A8 94 aa5.14□□□□□ -1.59
HDDC2-201ENST00000318787 KRTAP12-4P60329 112 aa5.08□□□□□ -1.6
HDDC2-201ENST00000318787 KRTAP20-2Q3LI61 65 aa5.08□□□□□ -1.6
HDDC2-201ENST00000318787 SPRR5A0A1B0GTR4 108 aa5.02□□□□□ -1.61
HDDC2-201ENST00000318787 SYNE1Q8NF91 8797 aaKnown RBP4.99□□□□□ -1.61
HDDC2-201ENST00000318787 KRTAP5-7Q6L8G8 165 aa4.97□□□□□ -1.61
HDDC2-201ENST00000318787 MT1AP04731 61 aa4.86□□□□□ -1.63
HDDC2-201ENST00000318787 KRTAP6-1Q3LI64 71 aa4.85□□□□□ -1.63
HDDC2-201ENST00000318787 KRTAP9-6A8MVA2 160 aa4.82□□□□□ -1.64
HDDC2-201ENST00000318787 PRAC1Q96KF2 57 aa4.79□□□□□ -1.64
HDDC2-201ENST00000318787 KRTAP5-1Q6L8H4 278 aa4.77□□□□□ -1.65
HDDC2-201ENST00000318787 BRK1Q8WUW1 75 aa4.77□□□□□ -1.65
HDDC2-201ENST00000318787 KRTAP5-2Q701N4 177 aa4.67□□□□□ -1.66
HDDC2-201ENST00000318787 LCE1FQ5T754 118 aa4.66□□□□□ -1.66
HDDC2-201ENST00000318787 KRTAP6-2Q3LI66 62 aa4.64□□□□□ -1.67
HDDC2-201ENST00000318787 KRTAP4-4Q9BYR3 166 aa4.57□□□□□ -1.68
HDDC2-201ENST00000318787 NDUFAF8A1L188 74 aa4.56□□□□□ -1.68
HDDC2-201ENST00000318787 OBSCNQ5VST9 7968 aa4.53□□□□□ -1.68
HDDC2-201ENST00000318787 KRTAP5-8O75690 187 aa4.51□□□□□ -1.69
HDDC2-201ENST00000318787 PMAIP1Q13794 54 aa4.44□□□□□ -1.7
HDDC2-201ENST00000318787 MUC5BQ9HC84 5762 aaPredicted RBP4.37□□□□□ -1.71
HDDC2-201ENST00000318787 AHNAKQ09666 5890 aaKnown RBP4.36□□□□□ -1.71
HDDC2-201ENST00000318787 MUC5ACP98088 5654 aa4.34□□□□□ -1.71
HDDC2-201ENST00000318787 PRO0628Q9UI54 55 aa4.06□□□□□ -1.76
HDDC2-201ENST00000318787 LCE3EQ5T5B0 92 aa4□□□□□ -1.77
HDDC2-201ENST00000318787 LCE1BQ5T7P3 118 aa3.91□□□□□ -1.78
HDDC2-201ENST00000318787 KTN1-AS1Q86SY8 53 aa3.91□□□□□ -1.78
HDDC2-201ENST00000318787 LCE1CQ5T751 118 aa3.74□□□□□ -1.81
HDDC2-201ENST00000318787 LCE3DQ9BYE3 92 aa3.73□□□□□ -1.81
HDDC2-201ENST00000318787 LUZP6Q538Z0 58 aa3.64□□□□□ -1.83
HDDC2-201ENST00000318787 KRTAP21-2Q3LI59 83 aa3.15□□□□□ -1.9
HDDC2-201ENST00000318787 PHGR1C9JFL3 82 aa3.02□□□□□ -1.93
HDDC2-201ENST00000318787 MUC19Q7Z5P9 8384 aa2.85□□□□□ -1.95
HDDC2-201ENST00000318787 PRM1P04553 51 aa2.7□□□□□ -1.98
HDDC2-201ENST00000318787 INE1O15225 51 aa2.27□□□□□ -2.05
HDDC2-201ENST00000318787 KRTAP21-1Q3LI58 79 aa2.27□□□□□ -2.05
HDDC2-201ENST00000318787 MUC16Q8WXI7 14507 aa1.92□□□□□ -2.1
Retrieved 78 of 20,778 RNA–protein pairs in 28.4 ms