RNA–Protein interactions for RNA: ENST00000311351.8

LSM1-201, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM1, Length 1,147 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-201ENST00000311351 UQCR11O14957 56 aa6.11□□□□□ -1.43
LSM1-201ENST00000311351 V9GYY9 64 aa6.09□□□□□ -1.43
LSM1-201ENST00000311351 MT1EP04732 61 aa6.08□□□□□ -1.44
LSM1-201ENST00000311351 KRTAP19-3Q7Z4W3 81 aa6.02□□□□□ -1.45
LSM1-201ENST00000311351 Q1T7F1 81 aa5.99□□□□□ -1.45
LSM1-201ENST00000311351 KRTAP19-5Q3LI72 72 aa5.99□□□□□ -1.45
LSM1-201ENST00000311351 MIR22HGQ0VDD5 57 aa5.96□□□□□ -1.46
LSM1-201ENST00000311351 PCP4P48539 62 aa5.94□□□□□ -1.46
LSM1-201ENST00000311351 PSPHP1O15172 72 aa5.93□□□□□ -1.46
LSM1-201ENST00000311351 TNP1P09430 55 aa5.93□□□□□ -1.46
LSM1-201ENST00000311351 DSTQ03001 7570 aaKnown RBP5.92□□□□□ -1.46
LSM1-201ENST00000311351 C10orf95Q9H7T3 257 aa5.91□□□□□ -1.46
LSM1-201ENST00000311351 K7ERS5 55 aa5.9□□□□□ -1.46
LSM1-201ENST00000311351 LCE3AQ5TA76 89 aa5.87□□□□□ -1.47
LSM1-201ENST00000311351 RPS28P62857 69 aaKnown RBP5.86□□□□□ -1.47
LSM1-201ENST00000311351 MT1GP13640 62 aa5.84□□□□□ -1.47
LSM1-201ENST00000311351 MT1LQ93083 61 aa5.82□□□□□ -1.48
LSM1-201ENST00000311351 MT1MQ8N339 61 aa5.8□□□□□ -1.48
LSM1-201ENST00000311351 A6NED7 52 aa5.79□□□□□ -1.48
LSM1-201ENST00000311351 PP632Q6XCG6 107 aa5.79□□□□□ -1.48
LSM1-201ENST00000311351 KRTAP15-1Q3LI76 137 aa5.78□□□□□ -1.48
LSM1-201ENST00000311351 KRTAP5-6Q6L8G9 129 aaPredicted RBP5.76□□□□□ -1.49
LSM1-201ENST00000311351 KRTAP25-1Q3LHN0 102 aa5.7□□□□□ -1.5
LSM1-201ENST00000311351 KRTAP4-3Q9BYR4 195 aa5.69□□□□□ -1.5
LSM1-201ENST00000311351 GPR98Q8WXG9 6306 aa5.63□□□□□ -1.51
LSM1-201ENST00000311351 KRTAP12-3P60328 96 aa5.61□□□□□ -1.51
LSM1-201ENST00000311351 SVIPQ8NHG7 77 aa5.61□□□□□ -1.51
LSM1-201ENST00000311351 KRTAP23-1A1A580 65 aa5.59□□□□□ -1.51
LSM1-201ENST00000311351 HMCN1Q96RW7 5635 aa5.58□□□□□ -1.52
LSM1-201ENST00000311351 MT4P47944 62 aa5.57□□□□□ -1.52
LSM1-201ENST00000311351 CDC42SE1Q9NRR8 79 aa5.57□□□□□ -1.52
LSM1-201ENST00000311351 KRTAP5-11Q6L8G4 156 aa5.56□□□□□ -1.52
LSM1-201ENST00000311351 KRTAP5-4Q6L8H1 288 aa5.5□□□□□ -1.53
LSM1-201ENST00000311351 ROMO1P60602 79 aa5.46□□□□□ -1.54
LSM1-201ENST00000311351 AHNAK2Q8IVF2 5795 aa5.4□□□□□ -1.54
LSM1-201ENST00000311351 KRTAP5-5Q701N2 237 aaPredicted RBP5.31□□□□□ -1.56
LSM1-201ENST00000311351 KRTAP20-2Q3LI61 65 aa5.2□□□□□ -1.58
LSM1-201ENST00000311351 KRTAP5-10Q6L8G5 202 aa5.19□□□□□ -1.58
LSM1-201ENST00000311351 BRK1Q8WUW1 75 aa5.18□□□□□ -1.58
LSM1-201ENST00000311351 LCE3CQ5T5A8 94 aa5.17□□□□□ -1.58
LSM1-201ENST00000311351 SPRR5A0A1B0GTR4 108 aa5.14□□□□□ -1.59
LSM1-201ENST00000311351 SYNE1Q8NF91 8797 aaKnown RBP5.13□□□□□ -1.59
LSM1-201ENST00000311351 KRTAP12-4P60329 112 aa5.12□□□□□ -1.59
LSM1-201ENST00000311351 LCE1EQ5T753 118 aa5.05□□□□□ -1.6
LSM1-201ENST00000311351 KRTAP5-7Q6L8G8 165 aa4.98□□□□□ -1.61
LSM1-201ENST00000311351 KRTAP5-1Q6L8H4 278 aa4.97□□□□□ -1.61
LSM1-201ENST00000311351 MT1AP04731 61 aa4.95□□□□□ -1.62
LSM1-201ENST00000311351 KRTAP6-1Q3LI64 71 aa4.93□□□□□ -1.62
LSM1-201ENST00000311351 KRTAP9-6A8MVA2 160 aa4.92□□□□□ -1.62
LSM1-201ENST00000311351 PMAIP1Q13794 54 aa4.89□□□□□ -1.63
LSM1-201ENST00000311351 KRTAP5-2Q701N4 177 aa4.82□□□□□ -1.64
LSM1-201ENST00000311351 KRTAP4-4Q9BYR3 166 aa4.81□□□□□ -1.64
LSM1-201ENST00000311351 KRTAP6-2Q3LI66 62 aa4.7□□□□□ -1.66
LSM1-201ENST00000311351 PRO0628Q9UI54 55 aa4.69□□□□□ -1.66
LSM1-201ENST00000311351 PRAC1Q96KF2 57 aa4.59□□□□□ -1.67
LSM1-201ENST00000311351 KRTAP5-8O75690 187 aa4.58□□□□□ -1.68
LSM1-201ENST00000311351 OBSCNQ5VST9 7968 aa4.53□□□□□ -1.68
LSM1-201ENST00000311351 MT3P25713 68 aa4.5□□□□□ -1.69
LSM1-201ENST00000311351 A0A0A0MQY5 61 aa4.46□□□□□ -1.7
LSM1-201ENST00000311351 KTN1-AS1Q86SY8 53 aa4.45□□□□□ -1.7
LSM1-201ENST00000311351 AHNAKQ09666 5890 aaKnown RBP4.44□□□□□ -1.7
LSM1-201ENST00000311351 MUC5BQ9HC84 5762 aaPredicted RBP4.43□□□□□ -1.7
LSM1-201ENST00000311351 MUC5ACP98088 5654 aa4.41□□□□□ -1.7
LSM1-201ENST00000311351 LUZP6Q538Z0 58 aa3.99□□□□□ -1.77
LSM1-201ENST00000311351 LCE1BQ5T7P3 118 aa3.92□□□□□ -1.78
LSM1-201ENST00000311351 LCE1CQ5T751 118 aa3.82□□□□□ -1.8
LSM1-201ENST00000311351 LCE1FQ5T754 118 aa3.82□□□□□ -1.8
LSM1-201ENST00000311351 LCE3DQ9BYE3 92 aa3.76□□□□□ -1.81
LSM1-201ENST00000311351 LCE3EQ5T5B0 92 aa3.58□□□□□ -1.84
LSM1-201ENST00000311351 NDUFAF8A1L188 74 aa3.37□□□□□ -1.87
LSM1-201ENST00000311351 KRTAP21-2Q3LI59 83 aa3.23□□□□□ -1.89
LSM1-201ENST00000311351 PHGR1C9JFL3 82 aa3.03□□□□□ -1.92
LSM1-201ENST00000311351 MUC19Q7Z5P9 8384 aa2.8□□□□□ -1.96
LSM1-201ENST00000311351 INE1O15225 51 aa2.77□□□□□ -1.97
LSM1-201ENST00000311351 PRM1P04553 51 aa2.77□□□□□ -1.97
LSM1-201ENST00000311351 KRTAP21-1Q3LI58 79 aa2.28□□□□□ -2.04
LSM1-201ENST00000311351 MUC16Q8WXI7 14507 aa1.98□□□□□ -2.09
Retrieved 77 of 20,778 RNA–protein pairs in 80.7 ms