RNA–Protein interactions for RNA: ENST00000309546.7

LIME1-201, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIME1, Length 1,178 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-201ENST00000309546 MT1LQ93083 61 aa6.94□□□□□ -1.3
LIME1-201ENST00000309546 PSPHP1O15172 72 aa6.93□□□□□ -1.3
LIME1-201ENST00000309546 LCE3AQ5TA76 89 aa6.93□□□□□ -1.3
LIME1-201ENST00000309546 TNP1P09430 55 aa6.92□□□□□ -1.3
LIME1-201ENST00000309546 C10orf95Q9H7T3 257 aa6.91□□□□□ -1.3
LIME1-201ENST00000309546 LCE1DQ5T752 114 aa6.88□□□□□ -1.31
LIME1-201ENST00000309546 MIR22HGQ0VDD5 57 aa6.83□□□□□ -1.32
LIME1-201ENST00000309546 MT4P47944 62 aa6.82□□□□□ -1.32
LIME1-201ENST00000309546 LCE4AQ5TA78 99 aa6.82□□□□□ -1.32
LIME1-201ENST00000309546 KRTAP4-3Q9BYR4 195 aa6.81□□□□□ -1.32
LIME1-201ENST00000309546 HMCN1Q96RW7 5635 aa6.77□□□□□ -1.33
LIME1-201ENST00000309546 A6NED7 52 aa6.74□□□□□ -1.33
LIME1-201ENST00000309546 AHNAK2Q8IVF2 5795 aa6.65□□□□□ -1.34
LIME1-201ENST00000309546 KRTAP12-3P60328 96 aa6.65□□□□□ -1.34
LIME1-201ENST00000309546 KRTAP5-4Q6L8H1 288 aa6.65□□□□□ -1.34
LIME1-201ENST00000309546 K7ERS5 55 aa6.64□□□□□ -1.35
LIME1-201ENST00000309546 KRTAP4-7Q9BYR0 210 aa6.62□□□□□ -1.35
LIME1-201ENST00000309546 KRTAP4-6Q9BYQ5 205 aa6.58□□□□□ -1.36
LIME1-201ENST00000309546 CDC42SE1Q9NRR8 79 aa6.55□□□□□ -1.36
LIME1-201ENST00000309546 KRTAP5-10Q6L8G5 202 aa6.47□□□□□ -1.37
LIME1-201ENST00000309546 KRTAP25-1Q3LHN0 102 aa6.44□□□□□ -1.38
LIME1-201ENST00000309546 KRTAP5-5Q701N2 237 aaPredicted RBP6.34□□□□□ -1.39
LIME1-201ENST00000309546 KRTAP20-2Q3LI61 65 aa6.31□□□□□ -1.4
LIME1-201ENST00000309546 LOC100996750A0A140TA64 210 aa6.28□□□□□ -1.4
LIME1-201ENST00000309546 BRK1Q8WUW1 75 aa6.28□□□□□ -1.4
LIME1-201ENST00000309546 SYNE1Q8NF91 8797 aaKnown RBP6.27□□□□□ -1.41
LIME1-201ENST00000309546 KRTAP5-3Q6L8H2 238 aa6.26□□□□□ -1.41
LIME1-201ENST00000309546 SPRR5A0A1B0GTR4 108 aa6.25□□□□□ -1.41
LIME1-201ENST00000309546 ROMO1P60602 79 aa6.25□□□□□ -1.41
LIME1-201ENST00000309546 KRTAP12-4P60329 112 aa6.24□□□□□ -1.41
LIME1-201ENST00000309546 KRTAP5-7Q6L8G8 165 aa6.23□□□□□ -1.41
LIME1-201ENST00000309546 KRTAP19-4Q3LI73 84 aa6.17□□□□□ -1.42
LIME1-201ENST00000309546 KRTAP15-1Q3LI76 137 aa6.16□□□□□ -1.42
LIME1-201ENST00000309546 KRTAP23-1A1A580 65 aa6.14□□□□□ -1.43
LIME1-201ENST00000309546 LCE3CQ5T5A8 94 aa6.09□□□□□ -1.43
LIME1-201ENST00000309546 PMAIP1Q13794 54 aa5.94□□□□□ -1.46
LIME1-201ENST00000309546 MT1AP04731 61 aa5.9□□□□□ -1.46
LIME1-201ENST00000309546 PRO0628Q9UI54 55 aa5.89□□□□□ -1.47
LIME1-201ENST00000309546 KRTAP6-1Q3LI64 71 aa5.88□□□□□ -1.47
LIME1-201ENST00000309546 KRTAP5-2Q701N4 177 aa5.81□□□□□ -1.48
LIME1-201ENST00000309546 KRTAP4-11Q9BYQ6 195 aa5.79□□□□□ -1.48
LIME1-201ENST00000309546 KRTAP9-6A8MVA2 160 aa5.76□□□□□ -1.49
LIME1-201ENST00000309546 KRTAP9-4Q9BYQ2 154 aa5.7□□□□□ -1.5
LIME1-201ENST00000309546 KRTAP6-2Q3LI66 62 aa5.65□□□□□ -1.5
LIME1-201ENST00000309546 KRTAP5-8O75690 187 aa5.59□□□□□ -1.51
LIME1-201ENST00000309546 PRAC1Q96KF2 57 aa5.58□□□□□ -1.52
LIME1-201ENST00000309546 OBSCNQ5VST9 7968 aa5.55□□□□□ -1.52
LIME1-201ENST00000309546 AHNAKQ09666 5890 aaKnown RBP5.54□□□□□ -1.52
LIME1-201ENST00000309546 KTN1-AS1Q86SY8 53 aa5.52□□□□□ -1.53
LIME1-201ENST00000309546 MUC5ACP98088 5654 aa5.51□□□□□ -1.53
LIME1-201ENST00000309546 MUC5BQ9HC84 5762 aaPredicted RBP5.47□□□□□ -1.53
LIME1-201ENST00000309546 MT3P25713 68 aa5.4□□□□□ -1.54
LIME1-201ENST00000309546 KRTAP9-9Q9BYP9 154 aa5.35□□□□□ -1.55
LIME1-201ENST00000309546 KRTAP5-1Q6L8H4 278 aa5.23□□□□□ -1.57
LIME1-201ENST00000309546 SVIPQ8NHG7 77 aa5.22□□□□□ -1.57
LIME1-201ENST00000309546 LCE1EQ5T753 118 aa4.95□□□□□ -1.62
LIME1-201ENST00000309546 LCE1BQ5T7P3 118 aa4.76□□□□□ -1.65
LIME1-201ENST00000309546 KRTAP4-2Q9BYR5 136 aa4.71□□□□□ -1.66
LIME1-201ENST00000309546 LUZP6Q538Z0 58 aa4.69□□□□□ -1.66
LIME1-201ENST00000309546 LCE1CQ5T751 118 aa4.6□□□□□ -1.67
LIME1-201ENST00000309546 LCE3DQ9BYE3 92 aa4.37□□□□□ -1.71
LIME1-201ENST00000309546 KRTAP4-12Q9BQ66 201 aa4.36□□□□□ -1.71
LIME1-201ENST00000309546 KRTAP5-11Q6L8G4 156 aa4.19□□□□□ -1.74
LIME1-201ENST00000309546 NDUFAF8A1L188 74 aa4.18□□□□□ -1.74
LIME1-201ENST00000309546 KRTAP5-6Q6L8G9 129 aaPredicted RBP4.16□□□□□ -1.74
LIME1-201ENST00000309546 LCE3EQ5T5B0 92 aa4.09□□□□□ -1.75
LIME1-201ENST00000309546 LCE1FQ5T754 118 aa4.08□□□□□ -1.76
LIME1-201ENST00000309546 KRTAP21-2Q3LI59 83 aa3.86□□□□□ -1.79
LIME1-201ENST00000309546 PHGR1C9JFL3 82 aa3.83□□□□□ -1.8
LIME1-201ENST00000309546 KRTAP4-4Q9BYR3 166 aa3.61□□□□□ -1.83
LIME1-201ENST00000309546 A0A0A0MQY5 61 aa3.57□□□□□ -1.84
LIME1-201ENST00000309546 INE1O15225 51 aa3.47□□□□□ -1.85
LIME1-201ENST00000309546 MUC19Q7Z5P9 8384 aa3.45□□□□□ -1.86
LIME1-201ENST00000309546 PRM1P04553 51 aa3.21□□□□□ -1.9
LIME1-201ENST00000309546 H3BS24 57 aa2.97□□□□□ -1.93
LIME1-201ENST00000309546 KRTAP21-1Q3LI58 79 aa2.85□□□□□ -1.95
LIME1-201ENST00000309546 MUC16Q8WXI7 14507 aa2.42□□□□□ -2.02
Retrieved 77 of 20,778 RNA–protein pairs in 84 ms