RNA–Protein interactions for RNA: ENST00000301897.5

CCDC88B-201, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 870 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-201ENST00000301897 KRTAP5-3Q6L8H2 238 aa5.08□□□□□ -1.6
CCDC88B-201ENST00000301897 ATP5EP56381 51 aaPredicted RBP5.06□□□□□ -1.6
CCDC88B-201ENST00000301897 C10orf95Q9H7T3 257 aa5.06□□□□□ -1.6
CCDC88B-201ENST00000301897 SMIM26A0A096LP01 95 aa5.03□□□□□ -1.6
CCDC88B-201ENST00000301897 LCE3AQ5TA76 89 aa5.02□□□□□ -1.61
CCDC88B-201ENST00000301897 A8MU10 97 aa5.01□□□□□ -1.61
CCDC88B-201ENST00000301897 TNP1P09430 55 aa4.99□□□□□ -1.61
CCDC88B-201ENST00000301897 LINC01558Q9Y6Z2 57 aa4.99□□□□□ -1.61
CCDC88B-201ENST00000301897 KRTAP20-2Q3LI61 65 aa4.97□□□□□ -1.61
CCDC88B-201ENST00000301897 SPRR5A0A1B0GTR4 108 aa4.95□□□□□ -1.62
CCDC88B-201ENST00000301897 TMEM258P61165 79 aa4.95□□□□□ -1.62
CCDC88B-201ENST00000301897 PRR15LQ9BU68 103 aa4.94□□□□□ -1.62
CCDC88B-201ENST00000301897 KRTAP12-4P60329 112 aa4.9□□□□□ -1.63
CCDC88B-201ENST00000301897 KRTAP4-7Q9BYR0 210 aa4.89□□□□□ -1.63
CCDC88B-201ENST00000301897 KRTAP5-5Q701N2 237 aaPredicted RBP4.87□□□□□ -1.63
CCDC88B-201ENST00000301897 KRTAP12-3P60328 96 aa4.86□□□□□ -1.63
CCDC88B-201ENST00000301897 UQCR11O14957 56 aa4.82□□□□□ -1.64
CCDC88B-201ENST00000301897 MIR22HGQ0VDD5 57 aa4.71□□□□□ -1.66
CCDC88B-201ENST00000301897 SYNE1Q8NF91 8797 aaKnown RBP4.71□□□□□ -1.66
CCDC88B-201ENST00000301897 Q1T7F1 81 aa4.69□□□□□ -1.66
CCDC88B-201ENST00000301897 V9GYY9 64 aa4.68□□□□□ -1.66
CCDC88B-201ENST00000301897 KRTAP19-4Q3LI73 84 aa4.66□□□□□ -1.66
CCDC88B-201ENST00000301897 LOC100996750A0A140TA64 210 aa4.64□□□□□ -1.67
CCDC88B-201ENST00000301897 PSPHP1O15172 72 aa4.64□□□□□ -1.67
CCDC88B-201ENST00000301897 KRTAP4-11Q9BYQ6 195 aa4.64□□□□□ -1.67
CCDC88B-201ENST00000301897 KRTAP25-1Q3LHN0 102 aa4.59□□□□□ -1.67
CCDC88B-201ENST00000301897 AHNAKQ09666 5890 aaKnown RBP4.56□□□□□ -1.68
CCDC88B-201ENST00000301897 K7ERS5 55 aa4.56□□□□□ -1.68
CCDC88B-201ENST00000301897 KRTAP5-2Q701N4 177 aa4.54□□□□□ -1.68
CCDC88B-201ENST00000301897 MUC5ACP98088 5654 aa4.51□□□□□ -1.69
CCDC88B-201ENST00000301897 MUC5BQ9HC84 5762 aaPredicted RBP4.51□□□□□ -1.69
CCDC88B-201ENST00000301897 RPS28P62857 69 aaKnown RBP4.5□□□□□ -1.69
CCDC88B-201ENST00000301897 KRTAP23-1A1A580 65 aa4.48□□□□□ -1.69
CCDC88B-201ENST00000301897 KRTAP5-8O75690 187 aa4.46□□□□□ -1.7
CCDC88B-201ENST00000301897 A6NED7 52 aa4.45□□□□□ -1.7
CCDC88B-201ENST00000301897 MT1AP04731 61 aa4.44□□□□□ -1.7
CCDC88B-201ENST00000301897 LCE3CQ5T5A8 94 aa4.44□□□□□ -1.7
CCDC88B-201ENST00000301897 KRTAP15-1Q3LI76 137 aa4.43□□□□□ -1.7
CCDC88B-201ENST00000301897 PCP4P48539 62 aa4.42□□□□□ -1.7
CCDC88B-201ENST00000301897 KRTAP6-1Q3LI64 71 aa4.41□□□□□ -1.7
CCDC88B-201ENST00000301897 KRTAP9-9Q9BYP9 154 aa4.35□□□□□ -1.71
CCDC88B-201ENST00000301897 CDC42SE1Q9NRR8 79 aa4.34□□□□□ -1.71
CCDC88B-201ENST00000301897 KRTAP9-4Q9BYQ2 154 aa4.33□□□□□ -1.72
CCDC88B-201ENST00000301897 OBSCNQ5VST9 7968 aa4.32□□□□□ -1.72
CCDC88B-201ENST00000301897 ROMO1P60602 79 aa4.31□□□□□ -1.72
CCDC88B-201ENST00000301897 KRTAP6-2Q3LI66 62 aa4.29□□□□□ -1.72
CCDC88B-201ENST00000301897 KRTAP9-6A8MVA2 160 aa4.17□□□□□ -1.74
CCDC88B-201ENST00000301897 KRTAP5-1Q6L8H4 278 aa4.12□□□□□ -1.75
CCDC88B-201ENST00000301897 MT3P25713 68 aa4.11□□□□□ -1.75
CCDC88B-201ENST00000301897 LCE1EQ5T753 118 aa3.87□□□□□ -1.79
CCDC88B-201ENST00000301897 BRK1Q8WUW1 75 aa3.86□□□□□ -1.79
CCDC88B-201ENST00000301897 PMAIP1Q13794 54 aa3.64□□□□□ -1.83
CCDC88B-201ENST00000301897 KRTAP4-2Q9BYR5 136 aa3.64□□□□□ -1.83
CCDC88B-201ENST00000301897 LCE1BQ5T7P3 118 aa3.62□□□□□ -1.83
CCDC88B-201ENST00000301897 LCE1CQ5T751 118 aa3.58□□□□□ -1.84
CCDC88B-201ENST00000301897 PRAC1Q96KF2 57 aa3.52□□□□□ -1.85
CCDC88B-201ENST00000301897 PRO0628Q9UI54 55 aa3.41□□□□□ -1.86
CCDC88B-201ENST00000301897 KRTAP4-12Q9BQ66 201 aa3.39□□□□□ -1.87
CCDC88B-201ENST00000301897 LCE1FQ5T754 118 aa3.3□□□□□ -1.88
CCDC88B-201ENST00000301897 KRTAP5-11Q6L8G4 156 aa3.28□□□□□ -1.88
CCDC88B-201ENST00000301897 KTN1-AS1Q86SY8 53 aa3.24□□□□□ -1.89
CCDC88B-201ENST00000301897 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.22□□□□□ -1.89
CCDC88B-201ENST00000301897 LCE3DQ9BYE3 92 aa3.14□□□□□ -1.91
CCDC88B-201ENST00000301897 PHGR1C9JFL3 82 aa3.1□□□□□ -1.91
CCDC88B-201ENST00000301897 SVIPQ8NHG7 77 aa3.03□□□□□ -1.92
CCDC88B-201ENST00000301897 KRTAP21-2Q3LI59 83 aa2.91□□□□□ -1.94
CCDC88B-201ENST00000301897 LUZP6Q538Z0 58 aa2.91□□□□□ -1.94
CCDC88B-201ENST00000301897 LCE3EQ5T5B0 92 aa2.91□□□□□ -1.94
CCDC88B-201ENST00000301897 MUC19Q7Z5P9 8384 aa2.68□□□□□ -1.98
CCDC88B-201ENST00000301897 KRTAP4-4Q9BYR3 166 aa2.68□□□□□ -1.98
CCDC88B-201ENST00000301897 KRTAP21-1Q3LI58 79 aa2.4□□□□□ -2.03
CCDC88B-201ENST00000301897 NDUFAF8A1L188 74 aa2.36□□□□□ -2.03
CCDC88B-201ENST00000301897 PRM1P04553 51 aa2.2□□□□□ -2.06
CCDC88B-201ENST00000301897 MUC16Q8WXI7 14507 aa1.95□□□□□ -2.1
CCDC88B-201ENST00000301897 INE1O15225 51 aa1.91□□□□□ -2.1
CCDC88B-201ENST00000301897 A0A0A0MQY5 61 aa1.81□□□□□ -2.12
CCDC88B-201ENST00000301897 H3BS24 57 aa1.43□□□□□ -2.18
Retrieved 77 of 20,778 RNA–protein pairs in 75.2 ms