RNA–Protein interactions for RNA: ENST00000288344.14

HMGN1-201, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 2

Gene HMGN1, Length 1,303 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-201ENST00000288344 A0A0D9SG42 100 aa3.5□□□□□ -1.85
HMGN1-201ENST00000288344 A0A1B0GU69 56 aa3.49□□□□□ -1.85
HMGN1-201ENST00000288344 KRTAP2-3P0C7H8 128 aa3.49□□□□□ -1.85
HMGN1-201ENST00000288344 KRTAP19-7Q3SYF9 63 aa3.49□□□□□ -1.85
HMGN1-201ENST00000288344 KRTAP2-4Q9BYR9 128 aa3.49□□□□□ -1.85
HMGN1-201ENST00000288344 LINC01558Q9Y6Z2 57 aa3.49□□□□□ -1.85
HMGN1-201ENST00000288344 CAMK2N1Q7Z7J9 78 aa3.48□□□□□ -1.85
HMGN1-201ENST00000288344 A8MU10 97 aa3.47□□□□□ -1.85
HMGN1-201ENST00000288344 TMEM258P61165 79 aa3.46□□□□□ -1.85
HMGN1-201ENST00000288344 KRTAP5-1Q6L8H4 278 aa3.46□□□□□ -1.85
HMGN1-201ENST00000288344 SPINT4Q6UDR6 99 aa3.44□□□□□ -1.86
HMGN1-201ENST00000288344 SMIM26A0A096LP01 95 aa3.43□□□□□ -1.86
HMGN1-201ENST00000288344 MT1EP04732 61 aa3.42□□□□□ -1.86
HMGN1-201ENST00000288344 C10orf95Q9H7T3 257 aa3.42□□□□□ -1.86
HMGN1-201ENST00000288344 KRTAP9-6A8MVA2 160 aa3.4□□□□□ -1.87
HMGN1-201ENST00000288344 KRTAP2-1Q9BYU5 128 aa3.4□□□□□ -1.87
HMGN1-201ENST00000288344 SPRR2DP22532 72 aa3.39□□□□□ -1.87
HMGN1-201ENST00000288344 DSTQ03001 7570 aaKnown RBP3.38□□□□□ -1.87
HMGN1-201ENST00000288344 KRTAP5-4Q6L8H1 288 aa3.37□□□□□ -1.87
HMGN1-201ENST00000288344 PRR15LQ9BU68 103 aa3.37□□□□□ -1.87
HMGN1-201ENST00000288344 KRTAP19-5Q3LI72 72 aa3.35□□□□□ -1.87
HMGN1-201ENST00000288344 KRTAP19-3Q7Z4W3 81 aa3.35□□□□□ -1.87
HMGN1-201ENST00000288344 KRTAP4-4Q9BYR3 166 aa3.34□□□□□ -1.87
HMGN1-201ENST00000288344 LCE3EQ5T5B0 92 aa3.33□□□□□ -1.88
HMGN1-201ENST00000288344 UQCR11O14957 56 aa3.32□□□□□ -1.88
HMGN1-201ENST00000288344 Q1T7F1 81 aa3.31□□□□□ -1.88
HMGN1-201ENST00000288344 LCE3AQ5TA76 89 aa3.3□□□□□ -1.88
HMGN1-201ENST00000288344 MT1GP13640 62 aa3.29□□□□□ -1.88
HMGN1-201ENST00000288344 TNP1P09430 55 aa3.28□□□□□ -1.88
HMGN1-201ENST00000288344 MT1LQ93083 61 aa3.27□□□□□ -1.89
HMGN1-201ENST00000288344 MIR22HGQ0VDD5 57 aa3.24□□□□□ -1.89
HMGN1-201ENST00000288344 MT1MQ8N339 61 aa3.23□□□□□ -1.89
HMGN1-201ENST00000288344 V9GYY9 64 aa3.23□□□□□ -1.89
HMGN1-201ENST00000288344 PSPHP1O15172 72 aa3.22□□□□□ -1.89
HMGN1-201ENST00000288344 RPS28P62857 69 aaKnown RBP3.22□□□□□ -1.89
HMGN1-201ENST00000288344 KRTAP4-3Q9BYR4 195 aa3.18□□□□□ -1.9
HMGN1-201ENST00000288344 KRTAP12-3P60328 96 aa3.17□□□□□ -1.9
HMGN1-201ENST00000288344 PP632Q6XCG6 107 aa3.17□□□□□ -1.9
HMGN1-201ENST00000288344 KRTAP25-1Q3LHN0 102 aa3.16□□□□□ -1.9
HMGN1-201ENST00000288344 HMCN1Q96RW7 5635 aa3.08□□□□□ -1.92
HMGN1-201ENST00000288344 A6NED7 52 aa3.07□□□□□ -1.92
HMGN1-201ENST00000288344 K7ERS5 55 aa3.07□□□□□ -1.92
HMGN1-201ENST00000288344 KRTAP5-5Q701N2 237 aaPredicted RBP3.04□□□□□ -1.92
HMGN1-201ENST00000288344 CDC42SE1Q9NRR8 79 aa3.01□□□□□ -1.93
HMGN1-201ENST00000288344 ROMO1P60602 79 aa2.98□□□□□ -1.93
HMGN1-201ENST00000288344 GPR98Q8WXG9 6306 aa2.98□□□□□ -1.93
HMGN1-201ENST00000288344 SYNE1Q8NF91 8797 aaKnown RBP2.97□□□□□ -1.93
HMGN1-201ENST00000288344 MT4P47944 62 aa2.96□□□□□ -1.93
HMGN1-201ENST00000288344 OBSCNQ5VST9 7968 aa2.96□□□□□ -1.94
HMGN1-201ENST00000288344 AHNAK2Q8IVF2 5795 aa2.94□□□□□ -1.94
HMGN1-201ENST00000288344 SPRR5A0A1B0GTR4 108 aa2.88□□□□□ -1.95
HMGN1-201ENST00000288344 PRO0628Q9UI54 55 aa2.88□□□□□ -1.95
HMGN1-201ENST00000288344 KRTAP20-2Q3LI61 65 aa2.87□□□□□ -1.95
HMGN1-201ENST00000288344 LUZP6Q538Z0 58 aa2.87□□□□□ -1.95
HMGN1-201ENST00000288344 KRTAP5-10Q6L8G5 202 aa2.84□□□□□ -1.96
HMGN1-201ENST00000288344 KRTAP5-2Q701N4 177 aa2.82□□□□□ -1.96
HMGN1-201ENST00000288344 LCE3DQ9BYE3 92 aa2.82□□□□□ -1.96
HMGN1-201ENST00000288344 KRTAP12-4P60329 112 aa2.8□□□□□ -1.96
HMGN1-201ENST00000288344 MT1AP04731 61 aa2.78□□□□□ -1.96
HMGN1-201ENST00000288344 KRTAP6-1Q3LI64 71 aa2.77□□□□□ -1.97
HMGN1-201ENST00000288344 PMAIP1Q13794 54 aa2.74□□□□□ -1.97
HMGN1-201ENST00000288344 KRTAP5-7Q6L8G8 165 aa2.7□□□□□ -1.98
HMGN1-201ENST00000288344 BRK1Q8WUW1 75 aa2.69□□□□□ -1.98
HMGN1-201ENST00000288344 KRTAP6-2Q3LI66 62 aa2.61□□□□□ -1.99
HMGN1-201ENST00000288344 KTN1-AS1Q86SY8 53 aa2.57□□□□□ -2
HMGN1-201ENST00000288344 KRTAP5-8O75690 187 aa2.55□□□□□ -2
HMGN1-201ENST00000288344 LCE1CQ5T751 118 aa2.52□□□□□ -2.01
HMGN1-201ENST00000288344 LCE1BQ5T7P3 118 aa2.52□□□□□ -2.01
HMGN1-201ENST00000288344 MUC5ACP98088 5654 aa2.44□□□□□ -2.02
HMGN1-201ENST00000288344 MUC5BQ9HC84 5762 aaPredicted RBP2.4□□□□□ -2.03
HMGN1-201ENST00000288344 AHNAKQ09666 5890 aaKnown RBP2.38□□□□□ -2.03
HMGN1-201ENST00000288344 MUC19Q7Z5P9 8384 aa2.01□□□□□ -2.09
HMGN1-201ENST00000288344 INE1O15225 51 aa1.9□□□□□ -2.11
HMGN1-201ENST00000288344 KRTAP21-2Q3LI59 83 aa1.87□□□□□ -2.11
HMGN1-201ENST00000288344 PHGR1C9JFL3 82 aa1.7□□□□□ -2.14
HMGN1-201ENST00000288344 PRM1P04553 51 aa1.53□□□□□ -2.16
HMGN1-201ENST00000288344 KRTAP21-1Q3LI58 79 aa1.2□□□□□ -2.22
HMGN1-201ENST00000288344 MUC16Q8WXI7 14507 aa1.17□□□□□ -2.22
Retrieved 78 of 20,778 RNA–protein pairs in 13.2 ms