RNA–Protein interactions for RNA: ENST00000269318.9

CCDC40-201, Transcript of coiled-coil domain containing 40, humanhuman

TSL 2 BASIC

Gene CCDC40, Length 1,970 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-201ENST00000269318 LCE3CQ5T5A8 94 aa5.95□□□□□ -1.46
CCDC40-201ENST00000269318 MT1LQ93083 61 aa5.89□□□□□ -1.47
CCDC40-201ENST00000269318 KRTAP6-3Q3LI67 103 aa5.87□□□□□ -1.47
CCDC40-201ENST00000269318 KRTAP19-4Q3LI73 84 aa5.85□□□□□ -1.47
CCDC40-201ENST00000269318 KRTAP4-7Q9BYR0 210 aa5.78□□□□□ -1.48
CCDC40-201ENST00000269318 NEBP20929 6669 aa5.77□□□□□ -1.49
CCDC40-201ENST00000269318 KRTAP9-6A8MVA2 160 aa5.69□□□□□ -1.5
CCDC40-201ENST00000269318 MUC12Q9UKN1 5478 aa5.69□□□□□ -1.5
CCDC40-201ENST00000269318 KRTAP19-3Q7Z4W3 81 aa5.67□□□□□ -1.5
CCDC40-201ENST00000269318 SPRR2FQ96RM1 72 aa5.65□□□□□ -1.51
CCDC40-201ENST00000269318 KRTAP20-1Q3LI63 56 aa5.64□□□□□ -1.51
CCDC40-201ENST00000269318 MT1GP13640 62 aa5.62□□□□□ -1.51
CCDC40-201ENST00000269318 MT1MQ8N339 61 aa5.6□□□□□ -1.51
CCDC40-201ENST00000269318 LCE5AQ5TCM9 118 aa5.56□□□□□ -1.52
CCDC40-201ENST00000269318 KRTAP4-3Q9BYR4 195 aa5.55□□□□□ -1.52
CCDC40-201ENST00000269318 KRTAP5-9P26371 169 aa5.52□□□□□ -1.53
CCDC40-201ENST00000269318 LOC100996750A0A140TA64 210 aa5.41□□□□□ -1.54
CCDC40-201ENST00000269318 MDN1Q9NU22 5596 aa5.39□□□□□ -1.55
CCDC40-201ENST00000269318 LCE1AQ5T7P2 110 aa5.39□□□□□ -1.55
CCDC40-201ENST00000269318 KRTAP2-3P0C7H8 128 aa5.38□□□□□ -1.55
CCDC40-201ENST00000269318 KRTAP2-4Q9BYR9 128 aa5.38□□□□□ -1.55
CCDC40-201ENST00000269318 KRTAP2-1Q9BYU5 128 aa5.35□□□□□ -1.55
CCDC40-201ENST00000269318 SPRR2EP22531 72 aa5.28□□□□□ -1.56
CCDC40-201ENST00000269318 SPRR2BP35325 72 aa5.28□□□□□ -1.56
CCDC40-201ENST00000269318 SPRR2AP35326 72 aa5.28□□□□□ -1.56
CCDC40-201ENST00000269318 DSTQ03001 7570 aaKnown RBP5.22□□□□□ -1.57
CCDC40-201ENST00000269318 KRTAP2-2Q9BYT5 123 aa5.18□□□□□ -1.58
CCDC40-201ENST00000269318 GPR98Q8WXG9 6306 aa5.1□□□□□ -1.59
CCDC40-201ENST00000269318 SPRR2DP22532 72 aa5.07□□□□□ -1.6
CCDC40-201ENST00000269318 INE1O15225 51 aa5.06□□□□□ -1.6
CCDC40-201ENST00000269318 KRTAP5-5Q701N2 237 aaPredicted RBP5.05□□□□□ -1.6
CCDC40-201ENST00000269318 MT1AP04731 61 aa4.98□□□□□ -1.61
CCDC40-201ENST00000269318 KRTAP6-1Q3LI64 71 aa4.97□□□□□ -1.61
CCDC40-201ENST00000269318 LCE3BQ5TA77 95 aa4.87□□□□□ -1.63
CCDC40-201ENST00000269318 SYNE1Q8NF91 8797 aaKnown RBP4.76□□□□□ -1.65
CCDC40-201ENST00000269318 KRTAP9-4Q9BYQ2 154 aa4.72□□□□□ -1.65
CCDC40-201ENST00000269318 KRTAP5-4Q6L8H1 288 aa4.68□□□□□ -1.66
CCDC40-201ENST00000269318 KRTAP4-9Q9BYQ8 210 aa4.68□□□□□ -1.66
CCDC40-201ENST00000269318 KRTAP12-4P60329 112 aa4.56□□□□□ -1.68
CCDC40-201ENST00000269318 KRTAP6-2Q3LI66 62 aa4.53□□□□□ -1.68
CCDC40-201ENST00000269318 HMCN1Q96RW7 5635 aa4.51□□□□□ -1.69
CCDC40-201ENST00000269318 LCE3DQ9BYE3 92 aa4.49□□□□□ -1.69
CCDC40-201ENST00000269318 AHNAK2Q8IVF2 5795 aa4.49□□□□□ -1.69
CCDC40-201ENST00000269318 LCE4AQ5TA78 99 aa4.49□□□□□ -1.69
CCDC40-201ENST00000269318 MT3P25713 68 aa4.48□□□□□ -1.69
CCDC40-201ENST00000269318 LCE1DQ5T752 114 aa4.47□□□□□ -1.69
CCDC40-201ENST00000269318 KRTAP5-10Q6L8G5 202 aa4.45□□□□□ -1.7
CCDC40-201ENST00000269318 KRTAP4-6Q9BYQ5 205 aa4.45□□□□□ -1.7
CCDC40-201ENST00000269318 MT4P47944 62 aa4.42□□□□□ -1.7
CCDC40-201ENST00000269318 LCE3EQ5T5B0 92 aa4.4□□□□□ -1.71
CCDC40-201ENST00000269318 KRTAP5-7Q6L8G8 165 aa4.36□□□□□ -1.71
CCDC40-201ENST00000269318 KRTAP20-2Q3LI61 65 aa4.36□□□□□ -1.71
CCDC40-201ENST00000269318 KRTAP5-2Q701N4 177 aa4.3□□□□□ -1.72
CCDC40-201ENST00000269318 KRTAP5-3Q6L8H2 238 aa4.22□□□□□ -1.73
CCDC40-201ENST00000269318 OBSCNQ5VST9 7968 aa4.1□□□□□ -1.75
CCDC40-201ENST00000269318 PRM1P04553 51 aa3.97□□□□□ -1.77
CCDC40-201ENST00000269318 AHNAKQ09666 5890 aaKnown RBP3.94□□□□□ -1.78
CCDC40-201ENST00000269318 MUC5ACP98088 5654 aa3.85□□□□□ -1.79
CCDC40-201ENST00000269318 LCE1EQ5T753 118 aa3.83□□□□□ -1.8
CCDC40-201ENST00000269318 MUC5BQ9HC84 5762 aaPredicted RBP3.77□□□□□ -1.81
CCDC40-201ENST00000269318 KRTAP4-11Q9BYQ6 195 aa3.76□□□□□ -1.81
CCDC40-201ENST00000269318 KRTAP5-1Q6L8H4 278 aa3.69□□□□□ -1.82
CCDC40-201ENST00000269318 KRTAP5-8O75690 187 aa3.65□□□□□ -1.82
CCDC40-201ENST00000269318 LCE1BQ5T7P3 118 aa3.62□□□□□ -1.83
CCDC40-201ENST00000269318 KRTAP4-2Q9BYR5 136 aa3.61□□□□□ -1.83
CCDC40-201ENST00000269318 LCE1CQ5T751 118 aa3.59□□□□□ -1.83
CCDC40-201ENST00000269318 KRTAP9-9Q9BYP9 154 aa3.56□□□□□ -1.84
CCDC40-201ENST00000269318 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.39□□□□□ -1.87
CCDC40-201ENST00000269318 KRTAP21-2Q3LI59 83 aa3.25□□□□□ -1.89
CCDC40-201ENST00000269318 KRTAP5-11Q6L8G4 156 aa3.14□□□□□ -1.91
CCDC40-201ENST00000269318 KRTAP4-12Q9BQ66 201 aa2.92□□□□□ -1.94
CCDC40-201ENST00000269318 KRTAP4-4Q9BYR3 166 aa2.88□□□□□ -1.95
CCDC40-201ENST00000269318 LCE1FQ5T754 118 aa2.74□□□□□ -1.97
CCDC40-201ENST00000269318 PHGR1C9JFL3 82 aa2.7□□□□□ -1.98
CCDC40-201ENST00000269318 KRTAP21-1Q3LI58 79 aa2.48□□□□□ -2.01
CCDC40-201ENST00000269318 MUC19Q7Z5P9 8384 aa2.42□□□□□ -2.02
CCDC40-201ENST00000269318 MUC16Q8WXI7 14507 aa1.74□□□□□ -2.13
Retrieved 77 of 20,778 RNA–protein pairs in 59.8 ms