RNA–Protein interactions for RNA: ENST00000265560.8

USP4-201, Transcript of ubiquitin specific peptidase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP4, Length 3,126 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-201ENST00000265560 SPRR5A0A1B0GTR4 108 aa5.8□□□□□ -1.48
USP4-201ENST00000265560 KRTAP9-6A0A140TA67 174 aa5.74□□□□□ -1.49
USP4-201ENST00000265560 LUZP6Q538Z0 58 aa5.74□□□□□ -1.49
USP4-201ENST00000265560 KRTAP4-3Q9BYR4 195 aa5.72□□□□□ -1.49
USP4-201ENST00000265560 H3BS24 57 aa5.7□□□□□ -1.5
USP4-201ENST00000265560 KRTAP19-3Q7Z4W3 81 aa5.67□□□□□ -1.5
USP4-201ENST00000265560 KRTAP9-6A8MVA2 160 aa5.64□□□□□ -1.51
USP4-201ENST00000265560 KRTAP9-1A8MXZ3 250 aaPredicted RBP5.64□□□□□ -1.51
USP4-201ENST00000265560 MT1MQ8N339 61 aa5.59□□□□□ -1.51
USP4-201ENST00000265560 MT1GP13640 62 aa5.58□□□□□ -1.52
USP4-201ENST00000265560 KRTAP5-9P26371 169 aa5.56□□□□□ -1.52
USP4-201ENST00000265560 LCE5AQ5TCM9 118 aa5.54□□□□□ -1.52
USP4-201ENST00000265560 LOC100996750A0A140TA64 210 aa5.54□□□□□ -1.52
USP4-201ENST00000265560 LCE1AQ5T7P2 110 aa5.51□□□□□ -1.53
USP4-201ENST00000265560 SPRR2EP22531 72 aa5.5□□□□□ -1.53
USP4-201ENST00000265560 SPRR2BP35325 72 aa5.5□□□□□ -1.53
USP4-201ENST00000265560 SPRR2AP35326 72 aa5.5□□□□□ -1.53
USP4-201ENST00000265560 A0A0A0MQY5 61 aa5.43□□□□□ -1.54
USP4-201ENST00000265560 KRTAP6-3Q3LI67 103 aa5.41□□□□□ -1.54
USP4-201ENST00000265560 KRTAP19-4Q3LI73 84 aa5.4□□□□□ -1.54
USP4-201ENST00000265560 KRTAP9-7A8MTY7 169 aa5.31□□□□□ -1.56
USP4-201ENST00000265560 SPRR2DP22532 72 aa5.26□□□□□ -1.57
USP4-201ENST00000265560 SYNE1Q8NF91 8797 aaKnown RBP5.25□□□□□ -1.57
USP4-201ENST00000265560 NEBP20929 6669 aa5.24□□□□□ -1.57
USP4-201ENST00000265560 KRTAP2-3P0C7H8 128 aa5.06□□□□□ -1.6
USP4-201ENST00000265560 KRTAP2-4Q9BYR9 128 aa5.06□□□□□ -1.6
USP4-201ENST00000265560 KRTAP2-1Q9BYU5 128 aa5.06□□□□□ -1.6
USP4-201ENST00000265560 LCE3BQ5TA77 95 aa5.04□□□□□ -1.6
USP4-201ENST00000265560 KRTAP6-1Q3LI64 71 aa4.99□□□□□ -1.61
USP4-201ENST00000265560 KRTAP5-5Q701N2 237 aaPredicted RBP4.96□□□□□ -1.62
USP4-201ENST00000265560 OBSCNQ5VST9 7968 aa4.92□□□□□ -1.62
USP4-201ENST00000265560 MT1AP04731 61 aa4.88□□□□□ -1.63
USP4-201ENST00000265560 KRTAP4-9Q9BYQ8 210 aa4.79□□□□□ -1.64
USP4-201ENST00000265560 MT4P47944 62 aa4.72□□□□□ -1.65
USP4-201ENST00000265560 KRTAP4-6Q9BYQ5 205 aa4.66□□□□□ -1.66
USP4-201ENST00000265560 KRTAP20-1Q3LI63 56 aa4.66□□□□□ -1.66
USP4-201ENST00000265560 KRTAP9-4Q9BYQ2 154 aa4.66□□□□□ -1.66
USP4-201ENST00000265560 KRTAP5-4Q6L8H1 288 aa4.65□□□□□ -1.67
USP4-201ENST00000265560 KRTAP2-2Q9BYT5 123 aa4.65□□□□□ -1.67
USP4-201ENST00000265560 KRTAP12-4P60329 112 aa4.61□□□□□ -1.67
USP4-201ENST00000265560 KRTAP6-2Q3LI66 62 aa4.6□□□□□ -1.67
USP4-201ENST00000265560 HMCN1Q96RW7 5635 aa4.59□□□□□ -1.68
USP4-201ENST00000265560 INE1O15225 51 aa4.51□□□□□ -1.69
USP4-201ENST00000265560 LCE1DQ5T752 114 aa4.51□□□□□ -1.69
USP4-201ENST00000265560 LCE4AQ5TA78 99 aa4.49□□□□□ -1.69
USP4-201ENST00000265560 KRTAP20-2Q3LI61 65 aa4.43□□□□□ -1.7
USP4-201ENST00000265560 MT3P25713 68 aa4.42□□□□□ -1.7
USP4-201ENST00000265560 LCE3DQ9BYE3 92 aa4.39□□□□□ -1.71
USP4-201ENST00000265560 LCE3EQ5T5B0 92 aa4.25□□□□□ -1.73
USP4-201ENST00000265560 KRTAP5-3Q6L8H2 238 aa4.23□□□□□ -1.73
USP4-201ENST00000265560 KRTAP5-2Q701N4 177 aa4.22□□□□□ -1.73
USP4-201ENST00000265560 AHNAK2Q8IVF2 5795 aa3.91□□□□□ -1.78
USP4-201ENST00000265560 PRM1P04553 51 aa3.86□□□□□ -1.79
USP4-201ENST00000265560 KRTAP4-11Q9BYQ6 195 aa3.84□□□□□ -1.79
USP4-201ENST00000265560 LCE1BQ5T7P3 118 aa3.79□□□□□ -1.8
USP4-201ENST00000265560 MUC5ACP98088 5654 aa3.77□□□□□ -1.81
USP4-201ENST00000265560 KRTAP5-1Q6L8H4 278 aa3.72□□□□□ -1.81
USP4-201ENST00000265560 LCE1EQ5T753 118 aa3.71□□□□□ -1.82
USP4-201ENST00000265560 KRTAP5-8O75690 187 aa3.68□□□□□ -1.82
USP4-201ENST00000265560 KRTAP4-2Q9BYR5 136 aa3.6□□□□□ -1.83
USP4-201ENST00000265560 KRTAP5-10Q6L8G5 202 aa3.6□□□□□ -1.83
USP4-201ENST00000265560 GPR98Q8WXG9 6306 aa3.57□□□□□ -1.84
USP4-201ENST00000265560 LCE1CQ5T751 118 aa3.51□□□□□ -1.85
USP4-201ENST00000265560 MUC5BQ9HC84 5762 aaPredicted RBP3.45□□□□□ -1.86
USP4-201ENST00000265560 KRTAP5-7Q6L8G8 165 aa3.41□□□□□ -1.86
USP4-201ENST00000265560 KRTAP9-9Q9BYP9 154 aa3.27□□□□□ -1.89
USP4-201ENST00000265560 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.22□□□□□ -1.89
USP4-201ENST00000265560 KRTAP21-2Q3LI59 83 aa3.22□□□□□ -1.89
USP4-201ENST00000265560 KRTAP4-12Q9BQ66 201 aa3.19□□□□□ -1.9
USP4-201ENST00000265560 KRTAP4-4Q9BYR3 166 aa3.08□□□□□ -1.92
USP4-201ENST00000265560 KRTAP5-11Q6L8G4 156 aa3.07□□□□□ -1.92
USP4-201ENST00000265560 MUC19Q7Z5P9 8384 aa2.97□□□□□ -1.93
USP4-201ENST00000265560 AHNAKQ09666 5890 aaKnown RBP2.88□□□□□ -1.95
USP4-201ENST00000265560 LCE1FQ5T754 118 aa2.73□□□□□ -1.97
USP4-201ENST00000265560 PHGR1C9JFL3 82 aa2.68□□□□□ -1.98
USP4-201ENST00000265560 KRTAP21-1Q3LI58 79 aa2.25□□□□□ -2.05
USP4-201ENST00000265560 MUC16Q8WXI7 14507 aa1.7□□□□□ -2.14
Retrieved 77 of 20,778 RNA–protein pairs in 97.3 ms