RNA–Protein interactions for RNA: ENST00000262188.12

SMARCD3-201, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMARCD3, Length 1,993 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCD3-201ENST00000262188 KRTAP5-9P26371 169 aa10.25□□□□□ -0.77
SMARCD3-201ENST00000262188 KRTAP19-7Q3SYF9 63 aa10.25□□□□□ -0.77
SMARCD3-201ENST00000262188 MUC12Q9UKN1 5478 aa10.25□□□□□ -0.77
SMARCD3-201ENST00000262188 MDN1Q9NU22 5596 aa10.09□□□□□ -0.79
SMARCD3-201ENST00000262188 MT1EP04732 61 aa10.08□□□□□ -0.8
SMARCD3-201ENST00000262188 KRTAP12-3P60328 96 aa10.06□□□□□ -0.8
SMARCD3-201ENST00000262188 SPRR2EP22531 72 aa9.88□□□□□ -0.83
SMARCD3-201ENST00000262188 SPRR2BP35325 72 aa9.88□□□□□ -0.83
SMARCD3-201ENST00000262188 SPRR2AP35326 72 aa9.88□□□□□ -0.83
SMARCD3-201ENST00000262188 LCE1AQ5T7P2 110 aa9.88□□□□□ -0.83
SMARCD3-201ENST00000262188 MT1LQ93083 61 aa9.81□□□□□ -0.84
SMARCD3-201ENST00000262188 KRTAP19-3Q7Z4W3 81 aa9.76□□□□□ -0.85
SMARCD3-201ENST00000262188 NEBP20929 6669 aa9.75□□□□□ -0.85
SMARCD3-201ENST00000262188 LCE5AQ5TCM9 118 aa9.66□□□□□ -0.86
SMARCD3-201ENST00000262188 MT1GP13640 62 aa9.59□□□□□ -0.87
SMARCD3-201ENST00000262188 KRTAP4-7Q9BYR0 210 aa9.56□□□□□ -0.88
SMARCD3-201ENST00000262188 MT1MQ8N339 61 aa9.54□□□□□ -0.88
SMARCD3-201ENST00000262188 SPRR2DP22532 72 aa9.52□□□□□ -0.89
SMARCD3-201ENST00000262188 KRTAP4-3Q9BYR4 195 aa9.46□□□□□ -0.9
SMARCD3-201ENST00000262188 LCE3CQ5T5A8 94 aa9.35□□□□□ -0.91
SMARCD3-201ENST00000262188 DSTQ03001 7570 aaKnown RBP9.34□□□□□ -0.91
SMARCD3-201ENST00000262188 KRTAP19-4Q3LI73 84 aa9.21□□□□□ -0.94
SMARCD3-201ENST00000262188 LCE3BQ5TA77 95 aa9.19□□□□□ -0.94
SMARCD3-201ENST00000262188 KRTAP20-1Q3LI63 56 aa9.12□□□□□ -0.95
SMARCD3-201ENST00000262188 KRTAP2-3P0C7H8 128 aa9.1□□□□□ -0.95
SMARCD3-201ENST00000262188 KRTAP2-4Q9BYR9 128 aa9.1□□□□□ -0.95
SMARCD3-201ENST00000262188 KRTAP2-1Q9BYU5 128 aa9.03□□□□□ -0.96
SMARCD3-201ENST00000262188 LOC100996750A0A140TA64 210 aa9□□□□□ -0.97
SMARCD3-201ENST00000262188 KRTAP9-6A8MVA2 160 aa8.95□□□□□ -0.98
SMARCD3-201ENST00000262188 KRTAP2-2Q9BYT5 123 aa8.88□□□□□ -0.99
SMARCD3-201ENST00000262188 KRTAP5-5Q701N2 237 aaPredicted RBP8.62□□□□□ -1.03
SMARCD3-201ENST00000262188 KRTAP5-4Q6L8H1 288 aa8.44□□□□□ -1.06
SMARCD3-201ENST00000262188 KRTAP4-9Q9BYQ8 210 aa8.43□□□□□ -1.06
SMARCD3-201ENST00000262188 MT4P47944 62 aa8.35□□□□□ -1.07
SMARCD3-201ENST00000262188 LCE4AQ5TA78 99 aa8.35□□□□□ -1.07
SMARCD3-201ENST00000262188 KRTAP6-1Q3LI64 71 aa8.31□□□□□ -1.08
SMARCD3-201ENST00000262188 MT1AP04731 61 aa8.3□□□□□ -1.08
SMARCD3-201ENST00000262188 LCE1DQ5T752 114 aa8.26□□□□□ -1.09
SMARCD3-201ENST00000262188 KRTAP4-6Q9BYQ5 205 aa8.24□□□□□ -1.09
SMARCD3-201ENST00000262188 SYNE1Q8NF91 8797 aaKnown RBP8.23□□□□□ -1.09
SMARCD3-201ENST00000262188 HMCN1Q96RW7 5635 aa8.15□□□□□ -1.1
SMARCD3-201ENST00000262188 KRTAP12-4P60329 112 aa8.1□□□□□ -1.11
SMARCD3-201ENST00000262188 KRTAP20-2Q3LI61 65 aa7.96□□□□□ -1.14
SMARCD3-201ENST00000262188 KRTAP9-4Q9BYQ2 154 aa7.93□□□□□ -1.14
SMARCD3-201ENST00000262188 KRTAP6-2Q3LI66 62 aa7.74□□□□□ -1.17
SMARCD3-201ENST00000262188 KRTAP5-3Q6L8H2 238 aa7.68□□□□□ -1.18
SMARCD3-201ENST00000262188 KRTAP5-2Q701N4 177 aa7.57□□□□□ -1.2
SMARCD3-201ENST00000262188 MT3P25713 68 aa7.52□□□□□ -1.21
SMARCD3-201ENST00000262188 AHNAK2Q8IVF2 5795 aa7.45□□□□□ -1.22
SMARCD3-201ENST00000262188 PRM1P04553 51 aa7.29□□□□□ -1.24
SMARCD3-201ENST00000262188 OBSCNQ5VST9 7968 aa7.25□□□□□ -1.25
SMARCD3-201ENST00000262188 LCE3EQ5T5B0 92 aa7.19□□□□□ -1.26
SMARCD3-201ENST00000262188 KRTAP5-10Q6L8G5 202 aa7.11□□□□□ -1.27
SMARCD3-201ENST00000262188 LCE3DQ9BYE3 92 aa7.11□□□□□ -1.27
SMARCD3-201ENST00000262188 GPR98Q8WXG9 6306 aa7.08□□□□□ -1.28
SMARCD3-201ENST00000262188 KRTAP4-11Q9BYQ6 195 aa7.02□□□□□ -1.29
SMARCD3-201ENST00000262188 KRTAP5-8O75690 187 aa6.78□□□□□ -1.32
SMARCD3-201ENST00000262188 KRTAP5-1Q6L8H4 278 aa6.66□□□□□ -1.34
SMARCD3-201ENST00000262188 KRTAP5-7Q6L8G8 165 aa6.62□□□□□ -1.35
SMARCD3-201ENST00000262188 LCE1EQ5T753 118 aa6.6□□□□□ -1.35
SMARCD3-201ENST00000262188 MUC5ACP98088 5654 aa6.45□□□□□ -1.38
SMARCD3-201ENST00000262188 LCE1BQ5T7P3 118 aa6.35□□□□□ -1.39
SMARCD3-201ENST00000262188 KRTAP4-2Q9BYR5 136 aa6.28□□□□□ -1.4
SMARCD3-201ENST00000262188 KRTAP9-9Q9BYP9 154 aa6.18□□□□□ -1.42
SMARCD3-201ENST00000262188 LCE1CQ5T751 118 aa6.17□□□□□ -1.42
SMARCD3-201ENST00000262188 MUC5BQ9HC84 5762 aaPredicted RBP6.02□□□□□ -1.45
SMARCD3-201ENST00000262188 AHNAKQ09666 5890 aaKnown RBP5.76□□□□□ -1.49
SMARCD3-201ENST00000262188 KRTAP5-6Q6L8G9 129 aaPredicted RBP5.7□□□□□ -1.5
SMARCD3-201ENST00000262188 LCE1FQ5T754 118 aa5.65□□□□□ -1.51
SMARCD3-201ENST00000262188 KRTAP5-11Q6L8G4 156 aa5.49□□□□□ -1.53
SMARCD3-201ENST00000262188 KRTAP4-12Q9BQ66 201 aa5.47□□□□□ -1.53
SMARCD3-201ENST00000262188 KRTAP21-2Q3LI59 83 aa5.43□□□□□ -1.54
SMARCD3-201ENST00000262188 KRTAP4-4Q9BYR3 166 aa4.98□□□□□ -1.61
SMARCD3-201ENST00000262188 KRTAP21-1Q3LI58 79 aa4.91□□□□□ -1.62
SMARCD3-201ENST00000262188 PHGR1C9JFL3 82 aa4.74□□□□□ -1.65
SMARCD3-201ENST00000262188 MUC19Q7Z5P9 8384 aa4.37□□□□□ -1.71
SMARCD3-201ENST00000262188 MUC16Q8WXI7 14507 aa3.01□□□□□ -1.93
Retrieved 77 of 20,778 RNA–protein pairs in 72 ms