RNA–Protein interactions for RNA: ENST00000261058.2

CCDC54-201, Transcript of coiled-coil domain containing 54, humanhuman

APPRIS P1 BASIC

Gene CCDC54, Length 1,444 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC54-201ENST00000261058 SPRR2AP35326 72 aa0.77□□□□□ -2.29
CCDC54-201ENST00000261058 LPAP08519 4548 aa0.77□□□□□ -2.29
CCDC54-201ENST00000261058 MAST4O15021 2626 aa0.75□□□□□ -2.29
CCDC54-201ENST00000261058 KRTAP6-2Q3LI66 62 aa0.75□□□□□ -2.29
CCDC54-201ENST00000261058 DNAH5Q8TE73 4624 aa0.75□□□□□ -2.29
CCDC54-201ENST00000261058 VPS13CQ709C8 3753 aa0.75□□□□□ -2.29
CCDC54-201ENST00000261058 IGSF10Q6WRI0 2623 aa0.74□□□□□ -2.29
CCDC54-201ENST00000261058 PKHD1P08F94 4074 aa0.74□□□□□ -2.29
CCDC54-201ENST00000261058 VCANP13611 3396 aa0.74□□□□□ -2.29
CCDC54-201ENST00000261058 CENPFP49454 3210 aa0.74□□□□□ -2.29
CCDC54-201ENST00000261058 SPRR2FQ96RM1 72 aa0.73□□□□□ -2.29
CCDC54-201ENST00000261058 MYO15AQ9UKN7 3530 aa0.73□□□□□ -2.29
CCDC54-201ENST00000261058 DYNC1H1Q14204 4646 aaKnown RBP0.72□□□□□ -2.29
CCDC54-201ENST00000261058 MT1EP04732 61 aa0.72□□□□□ -2.29
CCDC54-201ENST00000261058 FAT1Q14517 4588 aa0.71□□□□□ -2.3
CCDC54-201ENST00000261058 KRTAP21-1Q3LI58 79 aa0.71□□□□□ -2.3
CCDC54-201ENST00000261058 SPRR2GQ9BYE4 73 aa0.71□□□□□ -2.3
CCDC54-201ENST00000261058 PCNTO95613 3336 aa0.7□□□□□ -2.3
CCDC54-201ENST00000261058 SPRR2EP22531 72 aa0.7□□□□□ -2.3
CCDC54-201ENST00000261058 EYSQ5T1H1 3165 aa0.69□□□□□ -2.3
CCDC54-201ENST00000261058 BRCA2P51587 3418 aa0.69□□□□□ -2.3
CCDC54-201ENST00000261058 DNAH14Q0VDD8 3507 aa0.69□□□□□ -2.3
CCDC54-201ENST00000261058 MUC17Q685J3 4493 aa0.69□□□□□ -2.3
CCDC54-201ENST00000261058 SYNE1Q8NF91 8797 aaKnown RBP0.69□□□□□ -2.3
CCDC54-201ENST00000261058 MT1LQ93083 61 aa0.68□□□□□ -2.3
CCDC54-201ENST00000261058 UNC80Q8N2C7 3258 aa0.68□□□□□ -2.3
CCDC54-201ENST00000261058 WDFY3Q8IZQ1 3526 aa0.67□□□□□ -2.3
CCDC54-201ENST00000261058 MT1HP80294 61 aa0.65□□□□□ -2.3
CCDC54-201ENST00000261058 LRP1BQ9NZR2 4599 aa0.63□□□□□ -2.31
CCDC54-201ENST00000261058 HERC1Q15751 4861 aa0.63□□□□□ -2.31
CCDC54-201ENST00000261058 MUC5ACP98088 5654 aa0.62□□□□□ -2.31
CCDC54-201ENST00000261058 STARD9Q9P2P6 4700 aa0.62□□□□□ -2.31
CCDC54-201ENST00000261058 MT1XP80297 61 aa0.61□□□□□ -2.31
CCDC54-201ENST00000261058 KRTAP19-8Q3LI54 63 aa0.61□□□□□ -2.31
CCDC54-201ENST00000261058 CDH23Q9H251 3354 aa0.55□□□□□ -2.32
CCDC54-201ENST00000261058 LRP2P98164 4655 aa0.55□□□□□ -2.32
CCDC54-201ENST00000261058 KRTAP19-2Q3LHN2 52 aa0.54□□□□□ -2.32
CCDC54-201ENST00000261058 KRTAP19-7Q3SYF9 63 aa0.54□□□□□ -2.32
CCDC54-201ENST00000261058 MT1GP13640 62 aa0.52□□□□□ -2.33
CCDC54-201ENST00000261058 MDN1Q9NU22 5596 aa0.5□□□□□ -2.33
CCDC54-201ENST00000261058 MT1BP07438 61 aa0.49□□□□□ -2.33
CCDC54-201ENST00000261058 MUC2Q02817 5179 aa0.48□□□□□ -2.33
CCDC54-201ENST00000261058 MT2AP02795 61 aa0.48□□□□□ -2.33
CCDC54-201ENST00000261058 SYNE2Q8WXH0 6885 aaKnown RBP0.48□□□□□ -2.33
CCDC54-201ENST00000261058 KMT2DO14686 5537 aa0.48□□□□□ -2.33
CCDC54-201ENST00000261058 HMCN2Q8NDA2 5059 aa0.48□□□□□ -2.33
CCDC54-201ENST00000261058 MT1MQ8N339 61 aa0.47□□□□□ -2.33
CCDC54-201ENST00000261058 USH2AO75445 5202 aa0.47□□□□□ -2.33
CCDC54-201ENST00000261058 PHGR1C9JFL3 82 aa0.46□□□□□ -2.34
CCDC54-201ENST00000261058 KRTAP6-1Q3LI64 71 aa0.46□□□□□ -2.34
CCDC54-201ENST00000261058 SSPOA2VEC9 5147 aa0.45□□□□□ -2.34
CCDC54-201ENST00000261058 FAT4Q6V0I7 4981 aa0.44□□□□□ -2.34
CCDC54-201ENST00000261058 KMT2CQ8NEZ4 4911 aaKnown RBP0.44□□□□□ -2.34
CCDC54-201ENST00000261058 DNHD1Q96M86 4753 aa0.44□□□□□ -2.34
CCDC54-201ENST00000261058 MACF1Q9UPN3 7388 aaKnown RBP0.41□□□□□ -2.34
CCDC54-201ENST00000261058 HYDINQ4G0P3 5121 aa0.41□□□□□ -2.34
CCDC54-201ENST00000261058 FSIP2Q5CZC0 6907 aa0.41□□□□□ -2.34
CCDC54-201ENST00000261058 MT1HL1P0DM35 61 aa0.4□□□□□ -2.34
CCDC54-201ENST00000261058 HERC2O95714 4834 aa0.4□□□□□ -2.35
CCDC54-201ENST00000261058 PCLOQ9Y6V0 5065 aa0.4□□□□□ -2.35
CCDC54-201ENST00000261058 MT1FP04733 61 aa0.39□□□□□ -2.35
CCDC54-201ENST00000261058 RYR3Q15413 4870 aa0.36□□□□□ -2.35
CCDC54-201ENST00000261058 RYR1P21817 5038 aa0.36□□□□□ -2.35
CCDC54-201ENST00000261058 BIRC6Q9NR09 4857 aa0.36□□□□□ -2.35
CCDC54-201ENST00000261058 UBR4Q5T4S7 5183 aa0.33□□□□□ -2.36
CCDC54-201ENST00000261058 RNF213Q63HN8 5207 aa0.33□□□□□ -2.36
CCDC54-201ENST00000261058 MUC12Q9UKN1 5478 aa0.26□□□□□ -2.37
CCDC54-201ENST00000261058 EPPK1P58107 5090 aaKnown RBP0.23□□□□□ -2.37
CCDC54-201ENST00000261058 KIAA1109Q2LD37 5005 aa0.2□□□□□ -2.38
CCDC54-201ENST00000261058 ABCA13Q86UQ4 5058 aa0.18□□□□□ -2.38
CCDC54-201ENST00000261058 RYR2Q92736 4967 aa0.18□□□□□ -2.38
CCDC54-201ENST00000261058 MT4P47944 62 aa0.16□□□□□ -2.38
CCDC54-201ENST00000261058 DSTQ03001 7570 aaKnown RBP0.15□□□□□ -2.39
CCDC54-201ENST00000261058 KRTAP20-2Q3LI61 65 aa0.13□□□□□ -2.39
CCDC54-201ENST00000261058 KRTAP19-6Q3LI70 58 aa0.08□□□□□ -2.4
CCDC54-201ENST00000261058 NEBP20929 6669 aa-0.04□□□□□ -2.42
CCDC54-201ENST00000261058 KRTAP20-1Q3LI63 56 aa-0.05□□□□□ -2.42
Retrieved 77 of 20,778 RNA–protein pairs in 13.2 ms