RNA–Protein interactions for RNA: ENST00000231656.12

CDX1-201, Transcript of caudal type homeobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CDX1, Length 1,758 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1-201ENST00000231656 KRTAP6-3Q3LI67 103 aa8.11□□□□□ -1.11
CDX1-201ENST00000231656 LCE3CQ5T5A8 94 aa8.05□□□□□ -1.12
CDX1-201ENST00000231656 KRTAP9-7A8MTY7 169 aa7.99□□□□□ -1.13
CDX1-201ENST00000231656 MT1LQ93083 61 aa7.97□□□□□ -1.13
CDX1-201ENST00000231656 H3BS24 57 aa7.93□□□□□ -1.14
CDX1-201ENST00000231656 MDN1Q9NU22 5596 aa7.93□□□□□ -1.14
CDX1-201ENST00000231656 KRTAP19-4Q3LI73 84 aa7.91□□□□□ -1.14
CDX1-201ENST00000231656 KRTAP19-3Q7Z4W3 81 aa7.89□□□□□ -1.15
CDX1-201ENST00000231656 LCE1AQ5T7P2 110 aa7.86□□□□□ -1.15
CDX1-201ENST00000231656 MT1GP13640 62 aa7.81□□□□□ -1.16
CDX1-201ENST00000231656 SPRR2EP22531 72 aa7.81□□□□□ -1.16
CDX1-201ENST00000231656 SPRR2BP35325 72 aa7.81□□□□□ -1.16
CDX1-201ENST00000231656 SPRR2AP35326 72 aa7.81□□□□□ -1.16
CDX1-201ENST00000231656 KRTAP4-7Q9BYR0 210 aa7.8□□□□□ -1.16
CDX1-201ENST00000231656 LCE5AQ5TCM9 118 aa7.79□□□□□ -1.16
CDX1-201ENST00000231656 MT1MQ8N339 61 aa7.71□□□□□ -1.18
CDX1-201ENST00000231656 KRTAP9-6A8MVA2 160 aa7.69□□□□□ -1.18
CDX1-201ENST00000231656 NEBP20929 6669 aa7.59□□□□□ -1.19
CDX1-201ENST00000231656 KRTAP4-3Q9BYR4 195 aa7.56□□□□□ -1.2
CDX1-201ENST00000231656 SPRR2DP22532 72 aa7.53□□□□□ -1.2
CDX1-201ENST00000231656 DSTQ03001 7570 aaKnown RBP7.46□□□□□ -1.22
CDX1-201ENST00000231656 A0A0A0MQY5 61 aa7.37□□□□□ -1.23
CDX1-201ENST00000231656 LOC100996750A0A140TA64 210 aa7.31□□□□□ -1.24
CDX1-201ENST00000231656 LCE3BQ5TA77 95 aa7.25□□□□□ -1.25
CDX1-201ENST00000231656 KRTAP2-3P0C7H8 128 aa7.23□□□□□ -1.25
CDX1-201ENST00000231656 KRTAP2-4Q9BYR9 128 aa7.23□□□□□ -1.25
CDX1-201ENST00000231656 KRTAP2-1Q9BYU5 128 aa7.23□□□□□ -1.25
CDX1-201ENST00000231656 KRTAP20-1Q3LI63 56 aa7.06□□□□□ -1.28
CDX1-201ENST00000231656 KRTAP5-5Q701N2 237 aaPredicted RBP6.98□□□□□ -1.29
CDX1-201ENST00000231656 KRTAP2-2Q9BYT5 123 aa6.97□□□□□ -1.29
CDX1-201ENST00000231656 INE1O15225 51 aa6.86□□□□□ -1.31
CDX1-201ENST00000231656 MT1AP04731 61 aa6.77□□□□□ -1.33
CDX1-201ENST00000231656 KRTAP5-4Q6L8H1 288 aa6.77□□□□□ -1.33
CDX1-201ENST00000231656 KRTAP6-1Q3LI64 71 aa6.73□□□□□ -1.33
CDX1-201ENST00000231656 LCE4AQ5TA78 99 aa6.67□□□□□ -1.34
CDX1-201ENST00000231656 SYNE1Q8NF91 8797 aaKnown RBP6.64□□□□□ -1.35
CDX1-201ENST00000231656 MT4P47944 62 aa6.55□□□□□ -1.36
CDX1-201ENST00000231656 KRTAP4-9Q9BYQ8 210 aa6.55□□□□□ -1.36
CDX1-201ENST00000231656 KRTAP12-4P60329 112 aa6.52□□□□□ -1.37
CDX1-201ENST00000231656 KRTAP4-6Q9BYQ5 205 aa6.49□□□□□ -1.37
CDX1-201ENST00000231656 LCE1DQ5T752 114 aa6.48□□□□□ -1.37
CDX1-201ENST00000231656 KRTAP9-4Q9BYQ2 154 aa6.46□□□□□ -1.38
CDX1-201ENST00000231656 HMCN1Q96RW7 5635 aa6.42□□□□□ -1.38
CDX1-201ENST00000231656 KRTAP20-2Q3LI61 65 aa6.34□□□□□ -1.4
CDX1-201ENST00000231656 KRTAP6-2Q3LI66 62 aa6.23□□□□□ -1.41
CDX1-201ENST00000231656 MT3P25713 68 aa6.14□□□□□ -1.43
CDX1-201ENST00000231656 KRTAP5-3Q6L8H2 238 aa6.12□□□□□ -1.43
CDX1-201ENST00000231656 KRTAP5-2Q701N4 177 aa6.11□□□□□ -1.43
CDX1-201ENST00000231656 LCE3DQ9BYE3 92 aa6.08□□□□□ -1.44
CDX1-201ENST00000231656 LCE3EQ5T5B0 92 aa5.95□□□□□ -1.46
CDX1-201ENST00000231656 OBSCNQ5VST9 7968 aa5.81□□□□□ -1.48
CDX1-201ENST00000231656 AHNAK2Q8IVF2 5795 aa5.77□□□□□ -1.49
CDX1-201ENST00000231656 KRTAP4-11Q9BYQ6 195 aa5.55□□□□□ -1.52
CDX1-201ENST00000231656 KRTAP5-10Q6L8G5 202 aa5.5□□□□□ -1.53
CDX1-201ENST00000231656 GPR98Q8WXG9 6306 aa5.41□□□□□ -1.54
CDX1-201ENST00000231656 LCE1EQ5T753 118 aa5.39□□□□□ -1.55
CDX1-201ENST00000231656 PRM1P04553 51 aa5.38□□□□□ -1.55
CDX1-201ENST00000231656 KRTAP5-8O75690 187 aa5.35□□□□□ -1.55
CDX1-201ENST00000231656 KRTAP5-1Q6L8H4 278 aa5.31□□□□□ -1.56
CDX1-201ENST00000231656 MUC5ACP98088 5654 aa5.13□□□□□ -1.59
CDX1-201ENST00000231656 KRTAP5-7Q6L8G8 165 aa5.13□□□□□ -1.59
CDX1-201ENST00000231656 LCE1BQ5T7P3 118 aa5.06□□□□□ -1.6
CDX1-201ENST00000231656 KRTAP4-2Q9BYR5 136 aa5.04□□□□□ -1.6
CDX1-201ENST00000231656 LCE1CQ5T751 118 aa5.03□□□□□ -1.6
CDX1-201ENST00000231656 KRTAP9-9Q9BYP9 154 aa4.86□□□□□ -1.63
CDX1-201ENST00000231656 KRTAP5-6Q6L8G9 129 aaPredicted RBP4.68□□□□□ -1.66
CDX1-201ENST00000231656 MUC5BQ9HC84 5762 aaPredicted RBP4.64□□□□□ -1.67
CDX1-201ENST00000231656 KRTAP5-11Q6L8G4 156 aa4.46□□□□□ -1.7
CDX1-201ENST00000231656 KRTAP21-2Q3LI59 83 aa4.41□□□□□ -1.7
CDX1-201ENST00000231656 AHNAKQ09666 5890 aaKnown RBP4.39□□□□□ -1.71
CDX1-201ENST00000231656 KRTAP4-12Q9BQ66 201 aa4.27□□□□□ -1.73
CDX1-201ENST00000231656 LCE1FQ5T754 118 aa4.08□□□□□ -1.76
CDX1-201ENST00000231656 KRTAP4-4Q9BYR3 166 aa3.94□□□□□ -1.78
CDX1-201ENST00000231656 PHGR1C9JFL3 82 aa3.84□□□□□ -1.8
CDX1-201ENST00000231656 MUC19Q7Z5P9 8384 aa3.48□□□□□ -1.85
CDX1-201ENST00000231656 KRTAP21-1Q3LI58 79 aa3.35□□□□□ -1.87
CDX1-201ENST00000231656 MUC16Q8WXI7 14507 aa2.48□□□□□ -2.01
Retrieved 77 of 20,778 RNA–protein pairs in 10 ms