RNA–Protein interactions for RNA: ENST00000230085.12

SNX3-201, Transcript of sorting nexin 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SNX3, Length 1,755 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX3-201ENST00000230085 KRTAP6-3Q3LI67 103 aa7.61□□□□□ -1.19
SNX3-201ENST00000230085 LCE3CQ5T5A8 94 aa7.54□□□□□ -1.2
SNX3-201ENST00000230085 KRTAP5-9P26371 169 aa7.48□□□□□ -1.21
SNX3-201ENST00000230085 KRTAP19-5Q3LI72 72 aa7.46□□□□□ -1.22
SNX3-201ENST00000230085 KRTAP19-4Q3LI73 84 aa7.46□□□□□ -1.22
SNX3-201ENST00000230085 MUC12Q9UKN1 5478 aa7.45□□□□□ -1.22
SNX3-201ENST00000230085 SPRR2FQ96RM1 72 aa7.4□□□□□ -1.23
SNX3-201ENST00000230085 KRTAP4-12Q9BQ66 201 aa7.39□□□□□ -1.23
SNX3-201ENST00000230085 LCE3BQ5TA77 95 aa7.38□□□□□ -1.23
SNX3-201ENST00000230085 MDN1Q9NU22 5596 aa7.3□□□□□ -1.24
SNX3-201ENST00000230085 KRTAP9-9Q9BYP9 154 aa7.28□□□□□ -1.24
SNX3-201ENST00000230085 KRTAP9-4Q9BYQ2 154 aa7.28□□□□□ -1.24
SNX3-201ENST00000230085 KRTAP2-3P0C7H8 128 aa7.26□□□□□ -1.25
SNX3-201ENST00000230085 KRTAP2-4Q9BYR9 128 aa7.26□□□□□ -1.25
SNX3-201ENST00000230085 KRTAP2-1Q9BYU5 128 aa7.26□□□□□ -1.25
SNX3-201ENST00000230085 KRTAP9-6A8MVA2 160 aa7.21□□□□□ -1.25
SNX3-201ENST00000230085 KRTAP19-7Q3SYF9 63 aa7.2□□□□□ -1.26
SNX3-201ENST00000230085 NEBP20929 6669 aa7.2□□□□□ -1.26
SNX3-201ENST00000230085 SPRR2EP22531 72 aa7.16□□□□□ -1.26
SNX3-201ENST00000230085 SPRR2BP35325 72 aa7.16□□□□□ -1.26
SNX3-201ENST00000230085 SPRR2AP35326 72 aa7.16□□□□□ -1.26
SNX3-201ENST00000230085 LCE1AQ5T7P2 110 aa7.14□□□□□ -1.27
SNX3-201ENST00000230085 MT1EP04732 61 aa7.1□□□□□ -1.27
SNX3-201ENST00000230085 MT1LQ93083 61 aa6.97□□□□□ -1.29
SNX3-201ENST00000230085 KRTAP4-7Q9BYR0 210 aa6.95□□□□□ -1.3
SNX3-201ENST00000230085 KRTAP19-3Q7Z4W3 81 aa6.94□□□□□ -1.3
SNX3-201ENST00000230085 LCE1DQ5T752 114 aa6.92□□□□□ -1.3
SNX3-201ENST00000230085 SPRR2DP22532 72 aa6.91□□□□□ -1.3
SNX3-201ENST00000230085 LCE5AQ5TCM9 118 aa6.9□□□□□ -1.3
SNX3-201ENST00000230085 MT1GP13640 62 aa6.82□□□□□ -1.32
SNX3-201ENST00000230085 KRTAP20-1Q3LI63 56 aa6.81□□□□□ -1.32
SNX3-201ENST00000230085 KRTAP4-9Q9BYQ8 210 aa6.75□□□□□ -1.33
SNX3-201ENST00000230085 DSTQ03001 7570 aaKnown RBP6.74□□□□□ -1.33
SNX3-201ENST00000230085 MT1MQ8N339 61 aa6.72□□□□□ -1.33
SNX3-201ENST00000230085 KRTAP4-2Q9BYR5 136 aa6.67□□□□□ -1.34
SNX3-201ENST00000230085 KRTAP4-3Q9BYR4 195 aa6.61□□□□□ -1.35
SNX3-201ENST00000230085 KRTAP2-2Q9BYT5 123 aa6.59□□□□□ -1.35
SNX3-201ENST00000230085 LCE4AQ5TA78 99 aa6.49□□□□□ -1.37
SNX3-201ENST00000230085 KRTAP4-11Q9BYQ6 195 aa6.48□□□□□ -1.37
SNX3-201ENST00000230085 KRTAP12-4P60329 112 aa6.29□□□□□ -1.4
SNX3-201ENST00000230085 MT1AP04731 61 aa6.16□□□□□ -1.42
SNX3-201ENST00000230085 KRTAP5-5Q701N2 237 aaPredicted RBP6.13□□□□□ -1.43
SNX3-201ENST00000230085 KRTAP5-4Q6L8H1 288 aa6.11□□□□□ -1.43
SNX3-201ENST00000230085 KRTAP5-3Q6L8H2 238 aa6.07□□□□□ -1.44
SNX3-201ENST00000230085 MT4P47944 62 aa6.03□□□□□ -1.44
SNX3-201ENST00000230085 HMCN1Q96RW7 5635 aa5.91□□□□□ -1.46
SNX3-201ENST00000230085 SYNE1Q8NF91 8797 aaKnown RBP5.83□□□□□ -1.48
SNX3-201ENST00000230085 KRTAP6-1Q3LI64 71 aa5.83□□□□□ -1.48
SNX3-201ENST00000230085 LCE3DQ9BYE3 92 aa5.83□□□□□ -1.48
SNX3-201ENST00000230085 LCE3EQ5T5B0 92 aa5.8□□□□□ -1.48
SNX3-201ENST00000230085 KRTAP20-2Q3LI61 65 aa5.75□□□□□ -1.49
SNX3-201ENST00000230085 PRM1P04553 51 aa5.57□□□□□ -1.52
SNX3-201ENST00000230085 AHNAK2Q8IVF2 5795 aa5.48□□□□□ -1.53
SNX3-201ENST00000230085 KRTAP6-2Q3LI66 62 aa5.45□□□□□ -1.54
SNX3-201ENST00000230085 KRTAP5-2Q701N4 177 aa5.44□□□□□ -1.54
SNX3-201ENST00000230085 GPR98Q8WXG9 6306 aa5.35□□□□□ -1.55
SNX3-201ENST00000230085 KRTAP5-10Q6L8G5 202 aa5.32□□□□□ -1.56
SNX3-201ENST00000230085 MT3P25713 68 aa5.32□□□□□ -1.56
SNX3-201ENST00000230085 OBSCNQ5VST9 7968 aa5.21□□□□□ -1.57
SNX3-201ENST00000230085 KRTAP5-7Q6L8G8 165 aa5.02□□□□□ -1.61
SNX3-201ENST00000230085 KRTAP5-8O75690 187 aa4.95□□□□□ -1.62
SNX3-201ENST00000230085 KRTAP5-1Q6L8H4 278 aa4.81□□□□□ -1.64
SNX3-201ENST00000230085 LCE1EQ5T753 118 aa4.75□□□□□ -1.65
SNX3-201ENST00000230085 MUC5ACP98088 5654 aa4.62□□□□□ -1.67
SNX3-201ENST00000230085 KRTAP5-6Q6L8G9 129 aaPredicted RBP4.53□□□□□ -1.68
SNX3-201ENST00000230085 LCE1BQ5T7P3 118 aa4.48□□□□□ -1.69
SNX3-201ENST00000230085 MUC5BQ9HC84 5762 aaPredicted RBP4.44□□□□□ -1.7
SNX3-201ENST00000230085 LCE1CQ5T751 118 aa4.42□□□□□ -1.7
SNX3-201ENST00000230085 KRTAP5-11Q6L8G4 156 aa4.38□□□□□ -1.71
SNX3-201ENST00000230085 AHNAKQ09666 5890 aaKnown RBP4.28□□□□□ -1.72
SNX3-201ENST00000230085 KRTAP21-2Q3LI59 83 aa3.84□□□□□ -1.8
SNX3-201ENST00000230085 KRTAP4-4Q9BYR3 166 aa3.77□□□□□ -1.81
SNX3-201ENST00000230085 KRTAP21-1Q3LI58 79 aa3.71□□□□□ -1.82
SNX3-201ENST00000230085 LCE1FQ5T754 118 aa3.71□□□□□ -1.82
SNX3-201ENST00000230085 PHGR1C9JFL3 82 aa3.41□□□□□ -1.86
SNX3-201ENST00000230085 MUC19Q7Z5P9 8384 aa3.14□□□□□ -1.91
SNX3-201ENST00000230085 MUC16Q8WXI7 14507 aa2.16□□□□□ -2.06
Retrieved 77 of 20,778 RNA–protein pairs in 90.2 ms