RNA–Protein interactions for RNA: ENST00000217402.2

CHMP4B-201, Transcript of charged multivesicular body protein 4B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CHMP4B, Length 1,646 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4B-201ENST00000217402 KRTAP12-3P60328 96 aa9.93□□□□□ -0.82
CHMP4B-201ENST00000217402 PP632Q6XCG6 107 aa9.89□□□□□ -0.83
CHMP4B-201ENST00000217402 KRTAP19-3Q7Z4W3 81 aa9.78□□□□□ -0.84
CHMP4B-201ENST00000217402 MT1LQ93083 61 aa9.74□□□□□ -0.85
CHMP4B-201ENST00000217402 LCE5AQ5TCM9 118 aa9.68□□□□□ -0.86
CHMP4B-201ENST00000217402 SPRR2DP22532 72 aa9.67□□□□□ -0.86
CHMP4B-201ENST00000217402 MT1GP13640 62 aa9.62□□□□□ -0.87
CHMP4B-201ENST00000217402 PRAC1Q96KF2 57 aa9.56□□□□□ -0.88
CHMP4B-201ENST00000217402 KRTAP15-1Q3LI76 137 aa9.55□□□□□ -0.88
CHMP4B-201ENST00000217402 MT1MQ8N339 61 aa9.51□□□□□ -0.89
CHMP4B-201ENST00000217402 KTN1-AS1Q86SY8 53 aa9.45□□□□□ -0.9
CHMP4B-201ENST00000217402 KRTAP20-1Q3LI63 56 aa9.42□□□□□ -0.9
CHMP4B-201ENST00000217402 KRTAP4-7Q9BYR0 210 aa9.37□□□□□ -0.91
CHMP4B-201ENST00000217402 KRTAP2-3P0C7H8 128 aa9.36□□□□□ -0.91
CHMP4B-201ENST00000217402 KRTAP2-4Q9BYR9 128 aa9.36□□□□□ -0.91
CHMP4B-201ENST00000217402 LCE3BQ5TA77 95 aa9.32□□□□□ -0.92
CHMP4B-201ENST00000217402 KRTAP4-3Q9BYR4 195 aa9.31□□□□□ -0.92
CHMP4B-201ENST00000217402 KRTAP19-4Q3LI73 84 aa9.27□□□□□ -0.92
CHMP4B-201ENST00000217402 LCE3CQ5T5A8 94 aa9.22□□□□□ -0.93
CHMP4B-201ENST00000217402 DSTQ03001 7570 aaKnown RBP9.22□□□□□ -0.93
CHMP4B-201ENST00000217402 KRTAP2-2Q9BYT5 123 aa9.11□□□□□ -0.95
CHMP4B-201ENST00000217402 KRTAP2-1Q9BYU5 128 aa9.11□□□□□ -0.95
CHMP4B-201ENST00000217402 LOC100996750A0A140TA64 210 aa8.83□□□□□ -1
CHMP4B-201ENST00000217402 KRTAP9-6A8MVA2 160 aa8.71□□□□□ -1.02
CHMP4B-201ENST00000217402 KRTAP5-5Q701N2 237 aaPredicted RBP8.62□□□□□ -1.03
CHMP4B-201ENST00000217402 LCE4AQ5TA78 99 aa8.54□□□□□ -1.04
CHMP4B-201ENST00000217402 KRTAP5-4Q6L8H1 288 aa8.54□□□□□ -1.04
CHMP4B-201ENST00000217402 KRTAP4-9Q9BYQ8 210 aa8.5□□□□□ -1.05
CHMP4B-201ENST00000217402 SPRR5A0A1B0GTR4 108 aa8.47□□□□□ -1.05
CHMP4B-201ENST00000217402 MT4P47944 62 aa8.42□□□□□ -1.06
CHMP4B-201ENST00000217402 LCE1DQ5T752 114 aa8.37□□□□□ -1.07
CHMP4B-201ENST00000217402 MT1AP04731 61 aa8.28□□□□□ -1.08
CHMP4B-201ENST00000217402 KRTAP4-6Q9BYQ5 205 aa8.25□□□□□ -1.09
CHMP4B-201ENST00000217402 KRTAP6-1Q3LI64 71 aa8.21□□□□□ -1.09
CHMP4B-201ENST00000217402 HMCN1Q96RW7 5635 aa8.21□□□□□ -1.09
CHMP4B-201ENST00000217402 KRTAP12-4P60329 112 aa8.18□□□□□ -1.1
CHMP4B-201ENST00000217402 SYNE1Q8NF91 8797 aaKnown RBP8.15□□□□□ -1.11
CHMP4B-201ENST00000217402 KRTAP20-2Q3LI61 65 aa8.03□□□□□ -1.12
CHMP4B-201ENST00000217402 KRTAP9-4Q9BYQ2 154 aa7.91□□□□□ -1.14
CHMP4B-201ENST00000217402 LUZP6Q538Z0 58 aa7.88□□□□□ -1.15
CHMP4B-201ENST00000217402 KRTAP5-3Q6L8H2 238 aa7.74□□□□□ -1.17
CHMP4B-201ENST00000217402 H3BS24 57 aa7.7□□□□□ -1.18
CHMP4B-201ENST00000217402 KRTAP6-2Q3LI66 62 aa7.7□□□□□ -1.18
CHMP4B-201ENST00000217402 KRTAP5-2Q701N4 177 aa7.63□□□□□ -1.19
CHMP4B-201ENST00000217402 AHNAK2Q8IVF2 5795 aa7.59□□□□□ -1.2
CHMP4B-201ENST00000217402 MT3P25713 68 aa7.53□□□□□ -1.2
CHMP4B-201ENST00000217402 NDUFAF8A1L188 74 aa7.45□□□□□ -1.22
CHMP4B-201ENST00000217402 GPR98Q8WXG9 6306 aa7.42□□□□□ -1.22
CHMP4B-201ENST00000217402 KRTAP5-10Q6L8G5 202 aa7.31□□□□□ -1.24
CHMP4B-201ENST00000217402 KRTAP4-11Q9BYQ6 195 aa7.12□□□□□ -1.27
CHMP4B-201ENST00000217402 OBSCNQ5VST9 7968 aa7.04□□□□□ -1.28
CHMP4B-201ENST00000217402 KRTAP5-7Q6L8G8 165 aa6.89□□□□□ -1.31
CHMP4B-201ENST00000217402 KRTAP5-8O75690 187 aa6.87□□□□□ -1.31
CHMP4B-201ENST00000217402 LCE3DQ9BYE3 92 aa6.81□□□□□ -1.32
CHMP4B-201ENST00000217402 A0A0A0MQY5 61 aa6.76□□□□□ -1.33
CHMP4B-201ENST00000217402 KRTAP5-1Q6L8H4 278 aa6.7□□□□□ -1.34
CHMP4B-201ENST00000217402 LCE1EQ5T753 118 aa6.68□□□□□ -1.34
CHMP4B-201ENST00000217402 LCE3EQ5T5B0 92 aa6.54□□□□□ -1.36
CHMP4B-201ENST00000217402 MUC5ACP98088 5654 aa6.48□□□□□ -1.37
CHMP4B-201ENST00000217402 KRTAP9-9Q9BYP9 154 aa6.36□□□□□ -1.39
CHMP4B-201ENST00000217402 LCE1BQ5T7P3 118 aa6.32□□□□□ -1.4
CHMP4B-201ENST00000217402 KRTAP4-2Q9BYR5 136 aa6.28□□□□□ -1.4
CHMP4B-201ENST00000217402 INE1O15225 51 aa6.21□□□□□ -1.41
CHMP4B-201ENST00000217402 LCE1CQ5T751 118 aa6.21□□□□□ -1.41
CHMP4B-201ENST00000217402 MUC5BQ9HC84 5762 aaPredicted RBP6.13□□□□□ -1.43
CHMP4B-201ENST00000217402 AHNAKQ09666 5890 aaKnown RBP5.98□□□□□ -1.45
CHMP4B-201ENST00000217402 KRTAP5-6Q6L8G9 129 aaPredicted RBP5.74□□□□□ -1.49
CHMP4B-201ENST00000217402 KRTAP5-11Q6L8G4 156 aa5.56□□□□□ -1.52
CHMP4B-201ENST00000217402 KRTAP4-12Q9BQ66 201 aa5.45□□□□□ -1.54
CHMP4B-201ENST00000217402 PRM1P04553 51 aa5.42□□□□□ -1.54
CHMP4B-201ENST00000217402 KRTAP21-2Q3LI59 83 aa5.38□□□□□ -1.55
CHMP4B-201ENST00000217402 LCE1FQ5T754 118 aa5.16□□□□□ -1.58
CHMP4B-201ENST00000217402 KRTAP4-4Q9BYR3 166 aa4.88□□□□□ -1.63
CHMP4B-201ENST00000217402 PHGR1C9JFL3 82 aa4.78□□□□□ -1.64
CHMP4B-201ENST00000217402 MUC19Q7Z5P9 8384 aa4.28□□□□□ -1.72
CHMP4B-201ENST00000217402 KRTAP21-1Q3LI58 79 aa3.17□□□□□ -1.9
CHMP4B-201ENST00000217402 MUC16Q8WXI7 14507 aa3.02□□□□□ -1.93
Retrieved 77 of 20,778 RNA–protein pairs in 12.7 ms