RNA–Protein interactions for RNA: ENST00000640652.1

SCN3A-210, Transcript of sodium voltage-gated channel alpha subunit 3, humanhuman

TSL 5

Gene SCN3A, Length 8,825 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN3A-210ENST00000640652 KRTAP10-4P60372 401 aaPredicted RBP2.8□□□□□ -1.96
SCN3A-210ENST00000640652 P0C880 135 aa2.79□□□□□ -1.96
SCN3A-210ENST00000640652 DNAH17Q9UFH2 4485 aa2.79□□□□□ -1.96
SCN3A-210ENST00000640652 DNAH11Q96DT5 4516 aa2.79□□□□□ -1.96
SCN3A-210ENST00000640652 PP632Q6XCG6 107 aa2.78□□□□□ -1.96
SCN3A-210ENST00000640652 KRTAP10-6P60371 365 aaPredicted RBP2.78□□□□□ -1.96
SCN3A-210ENST00000640652 KRTAP12-2P59991 146 aa2.76□□□□□ -1.97
SCN3A-210ENST00000640652 PKHD1L1Q86WI1 4243 aa2.75□□□□□ -1.97
SCN3A-210ENST00000640652 NDUFAF8A1L188 74 aa2.75□□□□□ -1.97
SCN3A-210ENST00000640652 DNAH8Q96JB1 4490 aa2.74□□□□□ -1.97
SCN3A-210ENST00000640652 DNAH5Q8TE73 4624 aa2.74□□□□□ -1.97
SCN3A-210ENST00000640652 KRTAP3-3Q9BYR6 98 aa2.74□□□□□ -1.97
SCN3A-210ENST00000640652 C10orf95Q9H7T3 257 aa2.74□□□□□ -1.97
SCN3A-210ENST00000640652 KRTAP13-4Q3LI77 160 aa2.73□□□□□ -1.97
SCN3A-210ENST00000640652 KRTAP12-1P59990 96 aa2.73□□□□□ -1.97
SCN3A-210ENST00000640652 KRTAP17-1Q9BYP8 105 aa2.73□□□□□ -1.97
SCN3A-210ENST00000640652 A0A0A0MQY5 61 aa2.72□□□□□ -1.97
SCN3A-210ENST00000640652 KRTAP3-2Q9BYR7 98 aa2.71□□□□□ -1.97
SCN3A-210ENST00000640652 FLGP20930 4061 aaPredicted RBP2.7□□□□□ -1.98
SCN3A-210ENST00000640652 PLAC4Q8WY50 150 aa2.7□□□□□ -1.98
SCN3A-210ENST00000640652 TNXBP22105 4242 aa2.69□□□□□ -1.98
SCN3A-210ENST00000640652 M0R2T5 61 aa2.69□□□□□ -1.98
SCN3A-210ENST00000640652 TNP1P09430 55 aa2.69□□□□□ -1.98
SCN3A-210ENST00000640652 MT1HL1P0DM35 61 aa2.65□□□□□ -1.98
SCN3A-210ENST00000640652 SACSQ9NZJ4 4579 aa2.63□□□□□ -1.99
SCN3A-210ENST00000640652 KRTAP15-1Q3LI76 137 aa2.63□□□□□ -1.99
SCN3A-210ENST00000640652 LRP1BQ9NZR2 4599 aa2.62□□□□□ -1.99
SCN3A-210ENST00000640652 APOBP04114 4563 aaKnown RBP2.62□□□□□ -1.99
SCN3A-210ENST00000640652 DNHD1Q96M86 4753 aa2.56□□□□□ -2
SCN3A-210ENST00000640652 HYDINQ4G0P3 5121 aa2.56□□□□□ -2
SCN3A-210ENST00000640652 HSPG2P98160 4391 aa2.54□□□□□ -2
SCN3A-210ENST00000640652 MYCBP2O75592 4640 aa2.54□□□□□ -2
SCN3A-210ENST00000640652 KRTAP23-1A1A580 65 aa2.54□□□□□ -2
SCN3A-210ENST00000640652 LRP1Q07954 4544 aaKnown RBP2.52□□□□□ -2.01
SCN3A-210ENST00000640652 DYNC1H1Q14204 4646 aaKnown RBP2.51□□□□□ -2.01
SCN3A-210ENST00000640652 RYR1P21817 5038 aa2.49□□□□□ -2.01
SCN3A-210ENST00000640652 PRO2289Q9P1D8 64 aa2.48□□□□□ -2.01
SCN3A-210ENST00000640652 FAT1Q14517 4588 aa2.46□□□□□ -2.02
SCN3A-210ENST00000640652 KRTAP10-10P60014 251 aa2.46□□□□□ -2.02
SCN3A-210ENST00000640652 KRTAP4-5Q9BYR2 181 aa2.44□□□□□ -2.02
SCN3A-210ENST00000640652 FAT3Q8TDW7 4589 aa2.42□□□□□ -2.02
SCN3A-210ENST00000640652 LORP23490 312 aaPredicted RBP2.41□□□□□ -2.02
SCN3A-210ENST00000640652 KRTAP4-1Q9BYQ7 146 aa2.38□□□□□ -2.03
SCN3A-210ENST00000640652 LRP2P98164 4655 aa2.37□□□□□ -2.03
SCN3A-210ENST00000640652 SPRR2GQ9BYE4 73 aa2.36□□□□□ -2.03
SCN3A-210ENST00000640652 KMT2CQ8NEZ4 4911 aaKnown RBP2.35□□□□□ -2.03
SCN3A-210ENST00000640652 KRTAP10-12P60413 245 aa2.34□□□□□ -2.03
SCN3A-210ENST00000640652 RYR2Q92736 4967 aa2.33□□□□□ -2.04
SCN3A-210ENST00000640652 INE1O15225 51 aa2.33□□□□□ -2.04
SCN3A-210ENST00000640652 RYR3Q15413 4870 aa2.32□□□□□ -2.04
SCN3A-210ENST00000640652 LPAP08519 4548 aa2.3□□□□□ -2.04
SCN3A-210ENST00000640652 KRTAP12-3P60328 96 aa2.29□□□□□ -2.04
SCN3A-210ENST00000640652 LCE3AQ5TA76 89 aa2.29□□□□□ -2.04
SCN3A-210ENST00000640652 MT1HP80294 61 aa2.25□□□□□ -2.05
SCN3A-210ENST00000640652 SPRR5A0A1B0GTR4 108 aa2.24□□□□□ -2.05
SCN3A-210ENST00000640652 KRTAP19-2Q3LHN2 52 aa2.24□□□□□ -2.05
SCN3A-210ENST00000640652 KIAA1109Q2LD37 5005 aa2.22□□□□□ -2.05
SCN3A-210ENST00000640652 KRTAP19-1Q8IUB9 90 aa2.22□□□□□ -2.05
SCN3A-210ENST00000640652 MT2AP02795 61 aa2.21□□□□□ -2.06
SCN3A-210ENST00000640652 KRTAP8-1Q8IUC2 63 aa2.21□□□□□ -2.06
SCN3A-210ENST00000640652 MT1FP04733 61 aa2.19□□□□□ -2.06
SCN3A-210ENST00000640652 KRTAP19-8Q3LI54 63 aa2.18□□□□□ -2.06
SCN3A-210ENST00000640652 ABCA13Q86UQ4 5058 aa2.17□□□□□ -2.06
SCN3A-210ENST00000640652 MUC17Q685J3 4493 aa2.17□□□□□ -2.06
SCN3A-210ENST00000640652 LCE2CQ5TA81 110 aa2.16□□□□□ -2.06
SCN3A-210ENST00000640652 KRTAP19-4Q3LI73 84 aa2.14□□□□□ -2.07
SCN3A-210ENST00000640652 MUC2Q02817 5179 aa2.14□□□□□ -2.07
SCN3A-210ENST00000640652 MT1XP80297 61 aa2.14□□□□□ -2.07
SCN3A-210ENST00000640652 KRTAP9-8Q9BYQ0 159 aa2.12□□□□□ -2.07
SCN3A-210ENST00000640652 PCLOQ9Y6V0 5065 aa2.12□□□□□ -2.07
SCN3A-210ENST00000640652 HERC2O95714 4834 aa2.11□□□□□ -2.07
SCN3A-210ENST00000640652 KRTAP10-5P60370 271 aa2.11□□□□□ -2.07
SCN3A-210ENST00000640652 LCE3CQ5T5A8 94 aa2.11□□□□□ -2.07
SCN3A-210ENST00000640652 KRTAP19-5Q3LI72 72 aa2.08□□□□□ -2.08
SCN3A-210ENST00000640652 KRTAP10-7P60409 375 aaPredicted RBP2.08□□□□□ -2.08
SCN3A-210ENST00000640652 MT1BP07438 61 aa2.07□□□□□ -2.08
SCN3A-210ENST00000640652 KRTAP9-3Q9BYQ3 159 aa2.05□□□□□ -2.08
SCN3A-210ENST00000640652 EPPK1P58107 5090 aaKnown RBP2.03□□□□□ -2.08
SCN3A-210ENST00000640652 BIRC6Q9NR09 4857 aa2.01□□□□□ -2.09
SCN3A-210ENST00000640652 HERC1Q15751 4861 aa1.95□□□□□ -2.1
SCN3A-210ENST00000640652 RNF213Q63HN8 5207 aa1.93□□□□□ -2.1
SCN3A-210ENST00000640652 HMCN2Q8NDA2 5059 aa1.92□□□□□ -2.1
SCN3A-210ENST00000640652 LCE2BO14633 110 aa1.92□□□□□ -2.1
SCN3A-210ENST00000640652 UBR4Q5T4S7 5183 aa1.89□□□□□ -2.11
SCN3A-210ENST00000640652 MT1LQ93083 61 aa1.89□□□□□ -2.11
SCN3A-210ENST00000640652 CRCT1Q9UGL9 99 aa1.89□□□□□ -2.11
SCN3A-210ENST00000640652 KRTAP4-8A0A0G2JLE6 195 aa1.88□□□□□ -2.11
SCN3A-210ENST00000640652 KRTAP4-8Q9BYQ9 185 aa1.88□□□□□ -2.11
SCN3A-210ENST00000640652 MT1EP04732 61 aa1.87□□□□□ -2.11
SCN3A-210ENST00000640652 KRTAP2-3P0C7H8 128 aa1.85□□□□□ -2.11
SCN3A-210ENST00000640652 KRTAP2-4Q9BYR9 128 aa1.85□□□□□ -2.11
SCN3A-210ENST00000640652 KRTAP2-1Q9BYU5 128 aa1.85□□□□□ -2.11
SCN3A-210ENST00000640652 KRTAP19-7Q3SYF9 63 aa1.84□□□□□ -2.12
SCN3A-210ENST00000640652 LCE2AQ5TA79 106 aaPredicted RBP1.84□□□□□ -2.12
SCN3A-210ENST00000640652 MT1GP13640 62 aa1.83□□□□□ -2.12
SCN3A-210ENST00000640652 SPRR2FQ96RM1 72 aa1.82□□□□□ -2.12
SCN3A-210ENST00000640652 KRTAP19-6Q3LI70 58 aa1.81□□□□□ -2.12
SCN3A-210ENST00000640652 FAT4Q6V0I7 4981 aa1.81□□□□□ -2.12
SCN3A-210ENST00000640652 KRTAP19-3Q7Z4W3 81 aa1.81□□□□□ -2.12
SCN3A-210ENST00000640652 KRTAP9-6A8MVA2 160 aa1.79□□□□□ -2.12
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms