RNA–Protein interactions for RNA: ENST00000640036.1

SCN1A-218, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,131 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-218ENST00000640036 KRTAP10-4P60372 401 aaPredicted RBP2.27□□□□□ -2.05
SCN1A-218ENST00000640036 CMYA5Q8N3K9 4069 aa2.27□□□□□ -2.05
SCN1A-218ENST00000640036 ALMS1Q8TCU4 4167 aa2.25□□□□□ -2.05
SCN1A-218ENST00000640036 KRTAP10-6P60371 365 aaPredicted RBP2.24□□□□□ -2.05
SCN1A-218ENST00000640036 KRTAP3-3Q9BYR6 98 aa2.23□□□□□ -2.05
SCN1A-218ENST00000640036 KRTAP3-2Q9BYR7 98 aa2.23□□□□□ -2.05
SCN1A-218ENST00000640036 KRTAP12-1P59990 96 aa2.23□□□□□ -2.05
SCN1A-218ENST00000640036 ANK2Q01484 3957 aa2.22□□□□□ -2.05
SCN1A-218ENST00000640036 KRTAP19-4Q3LI73 84 aa2.21□□□□□ -2.06
SCN1A-218ENST00000640036 SPRR2FQ96RM1 72 aa2.21□□□□□ -2.06
SCN1A-218ENST00000640036 MT1HP80294 61 aa2.18□□□□□ -2.06
SCN1A-218ENST00000640036 KRTAP10-7P60409 375 aaPredicted RBP2.17□□□□□ -2.06
SCN1A-218ENST00000640036 LCE2BO14633 110 aa2.17□□□□□ -2.06
SCN1A-218ENST00000640036 HUWE1Q7Z6Z7 4374 aaKnown RBP2.16□□□□□ -2.06
SCN1A-218ENST00000640036 MT3P25713 68 aa2.15□□□□□ -2.07
SCN1A-218ENST00000640036 SPRR2EP22531 72 aa2.14□□□□□ -2.07
SCN1A-218ENST00000640036 SPRR2BP35325 72 aa2.14□□□□□ -2.07
SCN1A-218ENST00000640036 SPRR2AP35326 72 aa2.14□□□□□ -2.07
SCN1A-218ENST00000640036 DNAH7Q8WXX0 4024 aa2.13□□□□□ -2.07
SCN1A-218ENST00000640036 KRTAP12-3P60328 96 aa2.13□□□□□ -2.07
SCN1A-218ENST00000640036 KRTAP3-1Q9BYR8 98 aa2.12□□□□□ -2.07
SCN1A-218ENST00000640036 KRTAP9-2Q9BYQ4 174 aa2.1□□□□□ -2.07
SCN1A-218ENST00000640036 KRTAP9-6A0A140TA67 174 aa2.1□□□□□ -2.07
SCN1A-218ENST00000640036 MT2AP02795 61 aa2.09□□□□□ -2.08
SCN1A-218ENST00000640036 SPRR2DP22532 72 aa2.08□□□□□ -2.08
SCN1A-218ENST00000640036 LCE2CQ5TA81 110 aa2.08□□□□□ -2.08
SCN1A-218ENST00000640036 DNAH9Q9NYC9 4486 aa2.07□□□□□ -2.08
SCN1A-218ENST00000640036 KMT2AQ03164 3969 aa2.07□□□□□ -2.08
SCN1A-218ENST00000640036 HECTD4Q9Y4D8 3996 aa2.06□□□□□ -2.08
SCN1A-218ENST00000640036 KRTAP4-1Q9BYQ7 146 aa2.04□□□□□ -2.08
SCN1A-218ENST00000640036 DNHD1Q96M86 4753 aa2.04□□□□□ -2.08
SCN1A-218ENST00000640036 LCE2AQ5TA79 106 aaPredicted RBP2.03□□□□□ -2.08
SCN1A-218ENST00000640036 PLECQ15149 4684 aaKnown RBP2.03□□□□□ -2.08
SCN1A-218ENST00000640036 PRKDCP78527 4128 aaKnown RBP2.03□□□□□ -2.08
SCN1A-218ENST00000640036 DNAH6Q9C0G6 4158 aa2.03□□□□□ -2.08
SCN1A-218ENST00000640036 KRTAP10-5P60370 271 aa2.02□□□□□ -2.09
SCN1A-218ENST00000640036 DNAH3Q8TD57 4116 aa2.02□□□□□ -2.09
SCN1A-218ENST00000640036 KRTAP12-4P60329 112 aa2.02□□□□□ -2.09
SCN1A-218ENST00000640036 FAT2Q9NYQ8 4349 aa2.01□□□□□ -2.09
SCN1A-218ENST00000640036 SPRR2GQ9BYE4 73 aa2.01□□□□□ -2.09
SCN1A-218ENST00000640036 MT1FP04733 61 aa2.01□□□□□ -2.09
SCN1A-218ENST00000640036 LCE3AQ5TA76 89 aa2.01□□□□□ -2.09
SCN1A-218ENST00000640036 DNAH10Q8IVF4 4471 aa2□□□□□ -2.09
SCN1A-218ENST00000640036 VPS13BQ7Z7G8 4022 aa2□□□□□ -2.09
SCN1A-218ENST00000640036 DNAH11Q96DT5 4516 aa1.99□□□□□ -2.09
SCN1A-218ENST00000640036 KRTAP19-1Q8IUB9 90 aa1.98□□□□□ -2.09
SCN1A-218ENST00000640036 DNAH5Q8TE73 4624 aa1.97□□□□□ -2.09
SCN1A-218ENST00000640036 SPRR5A0A1B0GTR4 108 aa1.96□□□□□ -2.09
SCN1A-218ENST00000640036 KRTAP9-7A8MTY7 169 aa1.95□□□□□ -2.1
SCN1A-218ENST00000640036 KRTAP20-1Q3LI63 56 aa1.94□□□□□ -2.1
SCN1A-218ENST00000640036 PCLOQ9Y6V0 5065 aa1.93□□□□□ -2.1
SCN1A-218ENST00000640036 DNAH2Q9P225 4427 aa1.92□□□□□ -2.1
SCN1A-218ENST00000640036 DNAH17Q9UFH2 4485 aa1.92□□□□□ -2.1
SCN1A-218ENST00000640036 FLGP20930 4061 aaPredicted RBP1.91□□□□□ -2.1
SCN1A-218ENST00000640036 LRP1BQ9NZR2 4599 aa1.9□□□□□ -2.11
SCN1A-218ENST00000640036 FAT1Q14517 4588 aa1.9□□□□□ -2.11
SCN1A-218ENST00000640036 DYNC2H1Q8NCM8 4307 aaKnown RBP1.9□□□□□ -2.11
SCN1A-218ENST00000640036 RYR1P21817 5038 aa1.88□□□□□ -2.11
SCN1A-218ENST00000640036 PKHD1L1Q86WI1 4243 aa1.88□□□□□ -2.11
SCN1A-218ENST00000640036 KRTAP19-5Q3LI72 72 aa1.88□□□□□ -2.11
SCN1A-218ENST00000640036 KRTAP19-8Q3LI54 63 aa1.87□□□□□ -2.11
SCN1A-218ENST00000640036 PKHD1P08F94 4074 aa1.87□□□□□ -2.11
SCN1A-218ENST00000640036 VPS13DQ5THJ4 4388 aa1.86□□□□□ -2.11
SCN1A-218ENST00000640036 LCE3BQ5TA77 95 aa1.86□□□□□ -2.11
SCN1A-218ENST00000640036 MT1GP13640 62 aa1.85□□□□□ -2.11
SCN1A-218ENST00000640036 APOBP04114 4563 aaKnown RBP1.85□□□□□ -2.11
SCN1A-218ENST00000640036 SACSQ9NZJ4 4579 aa1.85□□□□□ -2.11
SCN1A-218ENST00000640036 KRTAP9-8Q9BYQ0 159 aa1.85□□□□□ -2.11
SCN1A-218ENST00000640036 LRP1Q07954 4544 aaKnown RBP1.83□□□□□ -2.12
SCN1A-218ENST00000640036 KRTAP2-3P0C7H8 128 aa1.83□□□□□ -2.12
SCN1A-218ENST00000640036 KRTAP2-4Q9BYR9 128 aa1.83□□□□□ -2.12
SCN1A-218ENST00000640036 MT4P47944 62 aa1.82□□□□□ -2.12
SCN1A-218ENST00000640036 KRTAP9-3Q9BYQ3 159 aa1.81□□□□□ -2.12
SCN1A-218ENST00000640036 FAT3Q8TDW7 4589 aa1.81□□□□□ -2.12
SCN1A-218ENST00000640036 DNAH8Q96JB1 4490 aa1.81□□□□□ -2.12
SCN1A-218ENST00000640036 LCE3CQ5T5A8 94 aa1.81□□□□□ -2.12
SCN1A-218ENST00000640036 STARD9Q9P2P6 4700 aa1.81□□□□□ -2.12
SCN1A-218ENST00000640036 DYNC1H1Q14204 4646 aaKnown RBP1.8□□□□□ -2.12
SCN1A-218ENST00000640036 KRTAP19-6Q3LI70 58 aa1.8□□□□□ -2.12
SCN1A-218ENST00000640036 RYR3Q15413 4870 aa1.79□□□□□ -2.12
SCN1A-218ENST00000640036 KRTAP6-3Q3LI67 103 aa1.78□□□□□ -2.12
SCN1A-218ENST00000640036 KRTAP9-1A8MXZ3 250 aaPredicted RBP1.78□□□□□ -2.12
SCN1A-218ENST00000640036 PKD1P98161 4303 aa1.78□□□□□ -2.12
SCN1A-218ENST00000640036 RYR2Q92736 4967 aa1.76□□□□□ -2.13
SCN1A-218ENST00000640036 KRTAP19-3Q7Z4W3 81 aa1.76□□□□□ -2.13
SCN1A-218ENST00000640036 MT1BP07438 61 aa1.75□□□□□ -2.13
SCN1A-218ENST00000640036 HSPG2P98160 4391 aa1.75□□□□□ -2.13
SCN1A-218ENST00000640036 KRTAP2-2Q9BYT5 123 aa1.75□□□□□ -2.13
SCN1A-218ENST00000640036 KRTAP2-1Q9BYU5 128 aa1.75□□□□□ -2.13
SCN1A-218ENST00000640036 MT1XP80297 61 aa1.74□□□□□ -2.13
SCN1A-218ENST00000640036 HERC2O95714 4834 aa1.73□□□□□ -2.13
SCN1A-218ENST00000640036 KRTAP4-8A0A0G2JLE6 195 aa1.72□□□□□ -2.13
SCN1A-218ENST00000640036 KRTAP4-8Q9BYQ9 185 aa1.72□□□□□ -2.13
SCN1A-218ENST00000640036 HYDINQ4G0P3 5121 aa1.71□□□□□ -2.14
SCN1A-218ENST00000640036 KMT2CQ8NEZ4 4911 aaKnown RBP1.71□□□□□ -2.14
SCN1A-218ENST00000640036 BIRC6Q9NR09 4857 aa1.69□□□□□ -2.14
SCN1A-218ENST00000640036 LCE1AQ5T7P2 110 aa1.69□□□□□ -2.14
SCN1A-218ENST00000640036 MYCBP2O75592 4640 aa1.69□□□□□ -2.14
SCN1A-218ENST00000640036 LCE3DQ9BYE3 92 aa1.68□□□□□ -2.14
SCN1A-218ENST00000640036 LRP2P98164 4655 aa1.68□□□□□ -2.14
Retrieved 100 of 20,778 RNA–protein pairs in 44.7 ms