RNA–Protein interactions for RNA: ENST00000637988.1

SCN1A-217, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,562 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-217ENST00000637988 SPRR2FQ96RM1 72 aa2.56□□□□□ -2
SCN1A-217ENST00000637988 HUWE1Q7Z6Z7 4374 aaKnown RBP2.55□□□□□ -2
SCN1A-217ENST00000637988 ANK3Q12955 4377 aaKnown RBP2.55□□□□□ -2
SCN1A-217ENST00000637988 CSMD2Q7Z408 3487 aa2.53□□□□□ -2
SCN1A-217ENST00000637988 CMYA5Q8N3K9 4069 aa2.53□□□□□ -2
SCN1A-217ENST00000637988 SVEP1Q4LDE5 3571 aa2.53□□□□□ -2.01
SCN1A-217ENST00000637988 KRTAP3-3Q9BYR6 98 aa2.52□□□□□ -2.01
SCN1A-217ENST00000637988 KRTAP10-4P60372 401 aaPredicted RBP2.51□□□□□ -2.01
SCN1A-217ENST00000637988 CUBNO60494 3623 aa2.49□□□□□ -2.01
SCN1A-217ENST00000637988 LYSTQ99698 3801 aa2.49□□□□□ -2.01
SCN1A-217ENST00000637988 KRTAP3-2Q9BYR7 98 aa2.48□□□□□ -2.01
SCN1A-217ENST00000637988 SPRR2EP22531 72 aa2.48□□□□□ -2.01
SCN1A-217ENST00000637988 SPRR2BP35325 72 aa2.48□□□□□ -2.01
SCN1A-217ENST00000637988 SPRR2AP35326 72 aa2.48□□□□□ -2.01
SCN1A-217ENST00000637988 MT1HP80294 61 aa2.47□□□□□ -2.01
SCN1A-217ENST00000637988 DNAH3Q8TD57 4116 aa2.47□□□□□ -2.01
SCN1A-217ENST00000637988 ANK2Q01484 3957 aa2.46□□□□□ -2.01
SCN1A-217ENST00000637988 ZNF469Q96JG9 3925 aaPredicted RBP2.44□□□□□ -2.02
SCN1A-217ENST00000637988 KRTAP19-4Q3LI73 84 aa2.42□□□□□ -2.02
SCN1A-217ENST00000637988 SPRR2DP22532 72 aa2.42□□□□□ -2.02
SCN1A-217ENST00000637988 KRTAP17-1Q9BYP8 105 aa2.4□□□□□ -2.03
SCN1A-217ENST00000637988 DNAH2Q9P225 4427 aa2.39□□□□□ -2.03
SCN1A-217ENST00000637988 LCE2BO14633 110 aa2.39□□□□□ -2.03
SCN1A-217ENST00000637988 KRTAP12-4P60329 112 aa2.39□□□□□ -2.03
SCN1A-217ENST00000637988 VPS13BQ7Z7G8 4022 aa2.39□□□□□ -2.03
SCN1A-217ENST00000637988 SPRR2GQ9BYE4 73 aa2.38□□□□□ -2.03
SCN1A-217ENST00000637988 KMT2AQ03164 3969 aa2.37□□□□□ -2.03
SCN1A-217ENST00000637988 DNAH6Q9C0G6 4158 aa2.37□□□□□ -2.03
SCN1A-217ENST00000637988 MT2AP02795 61 aa2.36□□□□□ -2.03
SCN1A-217ENST00000637988 KRTAP19-5Q3LI72 72 aa2.34□□□□□ -2.03
SCN1A-217ENST00000637988 RYR1P21817 5038 aa2.34□□□□□ -2.04
SCN1A-217ENST00000637988 FAT2Q9NYQ8 4349 aa2.33□□□□□ -2.04
SCN1A-217ENST00000637988 LCE3CQ5T5A8 94 aa2.33□□□□□ -2.04
SCN1A-217ENST00000637988 HECTD4Q9Y4D8 3996 aa2.33□□□□□ -2.04
SCN1A-217ENST00000637988 FRAS1Q86XX4 4008 aa2.3□□□□□ -2.04
SCN1A-217ENST00000637988 MT1FP04733 61 aa2.28□□□□□ -2.04
SCN1A-217ENST00000637988 KRTAP4-1Q9BYQ7 146 aa2.28□□□□□ -2.04
SCN1A-217ENST00000637988 DNAH9Q9NYC9 4486 aa2.28□□□□□ -2.04
SCN1A-217ENST00000637988 LCE2CQ5TA81 110 aa2.27□□□□□ -2.05
SCN1A-217ENST00000637988 PRKDCP78527 4128 aaKnown RBP2.25□□□□□ -2.05
SCN1A-217ENST00000637988 LCE3BQ5TA77 95 aa2.24□□□□□ -2.05
SCN1A-217ENST00000637988 LCE2DQ5TA82 110 aaPredicted RBP2.21□□□□□ -2.06
SCN1A-217ENST00000637988 DYNC2H1Q8NCM8 4307 aaKnown RBP2.21□□□□□ -2.06
SCN1A-217ENST00000637988 PKHD1L1Q86WI1 4243 aa2.19□□□□□ -2.06
SCN1A-217ENST00000637988 FLGP20930 4061 aaPredicted RBP2.18□□□□□ -2.06
SCN1A-217ENST00000637988 DNAH10Q8IVF4 4471 aa2.17□□□□□ -2.06
SCN1A-217ENST00000637988 KRTAP19-1Q8IUB9 90 aa2.17□□□□□ -2.06
SCN1A-217ENST00000637988 VPS13DQ5THJ4 4388 aa2.16□□□□□ -2.06
SCN1A-217ENST00000637988 MT1GP13640 62 aa2.16□□□□□ -2.06
SCN1A-217ENST00000637988 SPRR5A0A1B0GTR4 108 aa2.15□□□□□ -2.06
SCN1A-217ENST00000637988 DNAH17Q9UFH2 4485 aa2.15□□□□□ -2.07
SCN1A-217ENST00000637988 KRTAP19-8Q3LI54 63 aa2.14□□□□□ -2.07
SCN1A-217ENST00000637988 DNAH11Q96DT5 4516 aa2.13□□□□□ -2.07
SCN1A-217ENST00000637988 PKHD1P08F94 4074 aa2.11□□□□□ -2.07
SCN1A-217ENST00000637988 MT4P47944 62 aa2.1□□□□□ -2.07
SCN1A-217ENST00000637988 RYR2Q92736 4967 aa2.1□□□□□ -2.07
SCN1A-217ENST00000637988 LCE3DQ9BYE3 92 aa2.1□□□□□ -2.07
SCN1A-217ENST00000637988 KRTAP9-2Q9BYQ4 174 aa2.09□□□□□ -2.07
SCN1A-217ENST00000637988 DNAH5Q8TE73 4624 aa2.08□□□□□ -2.08
SCN1A-217ENST00000637988 PLECQ15149 4684 aaKnown RBP2.08□□□□□ -2.08
SCN1A-217ENST00000637988 PCLOQ9Y6V0 5065 aa2.07□□□□□ -2.08
SCN1A-217ENST00000637988 DNAH8Q96JB1 4490 aa2.07□□□□□ -2.08
SCN1A-217ENST00000637988 MT1XP80297 61 aa2.06□□□□□ -2.08
SCN1A-217ENST00000637988 STARD9Q9P2P6 4700 aa2.06□□□□□ -2.08
SCN1A-217ENST00000637988 KRTAP20-1Q3LI63 56 aa2.06□□□□□ -2.08
SCN1A-217ENST00000637988 KRTAP9-6A0A140TA67 174 aa2.05□□□□□ -2.08
SCN1A-217ENST00000637988 KRTAP19-3Q7Z4W3 81 aa2.05□□□□□ -2.08
SCN1A-217ENST00000637988 LCE3EQ5T5B0 92 aa2.04□□□□□ -2.08
SCN1A-217ENST00000637988 LRP1Q07954 4544 aaKnown RBP2.03□□□□□ -2.08
SCN1A-217ENST00000637988 DNHD1Q96M86 4753 aa2.03□□□□□ -2.08
SCN1A-217ENST00000637988 KRTAP9-8Q9BYQ0 159 aa2.02□□□□□ -2.09
SCN1A-217ENST00000637988 LRP1BQ9NZR2 4599 aa2.02□□□□□ -2.09
SCN1A-217ENST00000637988 MT3P25713 68 aa2.01□□□□□ -2.09
SCN1A-217ENST00000637988 DYNC1H1Q14204 4646 aaKnown RBP2.01□□□□□ -2.09
SCN1A-217ENST00000637988 KRTAP9-3Q9BYQ3 159 aa2□□□□□ -2.09
SCN1A-217ENST00000637988 APOBP04114 4563 aaKnown RBP1.99□□□□□ -2.09
SCN1A-217ENST00000637988 MT1LQ93083 61 aa1.98□□□□□ -2.09
SCN1A-217ENST00000637988 LCE1BQ5T7P3 118 aa1.98□□□□□ -2.09
SCN1A-217ENST00000637988 MT1BP07438 61 aa1.98□□□□□ -2.09
SCN1A-217ENST00000637988 UBR4Q5T4S7 5183 aa1.98□□□□□ -2.09
SCN1A-217ENST00000637988 LCE1DQ5T752 114 aa1.98□□□□□ -2.09
SCN1A-217ENST00000637988 KRTAP4-8A0A0G2JLE6 195 aa1.97□□□□□ -2.09
SCN1A-217ENST00000637988 KRTAP4-8Q9BYQ9 185 aa1.97□□□□□ -2.09
SCN1A-217ENST00000637988 SACSQ9NZJ4 4579 aa1.96□□□□□ -2.1
SCN1A-217ENST00000637988 PKD1P98161 4303 aa1.96□□□□□ -2.1
SCN1A-217ENST00000637988 RYR3Q15413 4870 aa1.95□□□□□ -2.1
SCN1A-217ENST00000637988 KRTAP19-6Q3LI70 58 aa1.93□□□□□ -2.1
SCN1A-217ENST00000637988 FAT3Q8TDW7 4589 aa1.93□□□□□ -2.1
SCN1A-217ENST00000637988 HYDINQ4G0P3 5121 aa1.93□□□□□ -2.1
SCN1A-217ENST00000637988 KRTAP9-7A8MTY7 169 aa1.93□□□□□ -2.1
SCN1A-217ENST00000637988 LCE5AQ5TCM9 118 aa1.92□□□□□ -2.1
SCN1A-217ENST00000637988 TNXBP22105 4242 aa1.92□□□□□ -2.1
SCN1A-217ENST00000637988 KRTAP2-3P0C7H8 128 aa1.91□□□□□ -2.1
SCN1A-217ENST00000637988 KRTAP2-4Q9BYR9 128 aa1.91□□□□□ -2.1
SCN1A-217ENST00000637988 MT1EP04732 61 aa1.91□□□□□ -2.1
SCN1A-217ENST00000637988 HSPG2P98160 4391 aa1.9□□□□□ -2.1
SCN1A-217ENST00000637988 FAT1Q14517 4588 aa1.9□□□□□ -2.11
SCN1A-217ENST00000637988 ABCA13Q86UQ4 5058 aa1.89□□□□□ -2.11
SCN1A-217ENST00000637988 MT1MQ8N339 61 aa1.88□□□□□ -2.11
SCN1A-217ENST00000637988 MYCBP2O75592 4640 aa1.87□□□□□ -2.11
Retrieved 100 of 20,778 RNA–protein pairs in 72.6 ms