RNA–Protein interactions for RNA: ENST00000628391.1

TCF4-264, Transcript of transcription factor 4, humanhuman

TSL 1 (best)

Gene TCF4, Length 201 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCF4-264ENST00000628391 TRRAPQ9Y4A5 3859 aa0.85□□□□□ -2.27
TCF4-264ENST00000628391 CSMD3Q7Z407 3707 aa0.85□□□□□ -2.27
TCF4-264ENST00000628391 FSIP2Q5CZC0 6907 aa0.85□□□□□ -2.27
TCF4-264ENST00000628391 CMYA5Q8N3K9 4069 aa0.84□□□□□ -2.27
TCF4-264ENST00000628391 RNF213Q63HN8 5207 aa0.84□□□□□ -2.28
TCF4-264ENST00000628391 FRAS1Q86XX4 4008 aa0.84□□□□□ -2.28
TCF4-264ENST00000628391 KRTAP10-2P60368 255 aa0.83□□□□□ -2.28
TCF4-264ENST00000628391 STAB2Q8WWQ8 2551 aa0.83□□□□□ -2.28
TCF4-264ENST00000628391 ACANP16112 2415 aa0.83□□□□□ -2.28
TCF4-264ENST00000628391 DNAH8Q96JB1 4490 aa0.82□□□□□ -2.28
TCF4-264ENST00000628391 KRTAP10-1P60331 282 aa0.82□□□□□ -2.28
TCF4-264ENST00000628391 HECTD4Q9Y4D8 3996 aa0.82□□□□□ -2.28
TCF4-264ENST00000628391 SRRM2Q9UQ35 2752 aaKnown RBP0.82□□□□□ -2.28
TCF4-264ENST00000628391 MXRA5Q9NR99 2828 aa0.82□□□□□ -2.28
TCF4-264ENST00000628391 DYNC2H1Q8NCM8 4307 aaKnown RBP0.82□□□□□ -2.28
TCF4-264ENST00000628391 TENM3Q9P273 2699 aa0.82□□□□□ -2.28
TCF4-264ENST00000628391 MYCBP2O75592 4640 aa0.81□□□□□ -2.28
TCF4-264ENST00000628391 DNAH3Q8TD57 4116 aa0.81□□□□□ -2.28
TCF4-264ENST00000628391 KRTAP9-6A0A140TA67 174 aa0.81□□□□□ -2.28
TCF4-264ENST00000628391 FAT4Q6V0I7 4981 aa0.81□□□□□ -2.28
TCF4-264ENST00000628391 COL7A1Q02388 2944 aa0.81□□□□□ -2.28
TCF4-264ENST00000628391 TENM1Q9UKZ4 2725 aa0.8□□□□□ -2.28
TCF4-264ENST00000628391 ZANQ9Y493 2812 aa0.8□□□□□ -2.28
TCF4-264ENST00000628391 DNAH10Q8IVF4 4471 aa0.8□□□□□ -2.28
TCF4-264ENST00000628391 DNAH11Q96DT5 4516 aa0.8□□□□□ -2.28
TCF4-264ENST00000628391 MGAM2Q2M2H8 2515 aa0.8□□□□□ -2.28
TCF4-264ENST00000628391 NSD1Q96L73 2696 aaPredicted RBP0.8□□□□□ -2.28
TCF4-264ENST00000628391 DNAH9Q9NYC9 4486 aa0.79□□□□□ -2.28
TCF4-264ENST00000628391 DNAH17Q9UFH2 4485 aa0.79□□□□□ -2.28
TCF4-264ENST00000628391 DNAH7Q8WXX0 4024 aa0.79□□□□□ -2.28
TCF4-264ENST00000628391 KRTAP10-10P60014 251 aa0.79□□□□□ -2.28
TCF4-264ENST00000628391 LYSTQ99698 3801 aa0.79□□□□□ -2.28
TCF4-264ENST00000628391 HMCN2Q8NDA2 5059 aa0.79□□□□□ -2.28
TCF4-264ENST00000628391 LORP23490 312 aaPredicted RBP0.78□□□□□ -2.28
TCF4-264ENST00000628391 KRTAP9-2Q9BYQ4 174 aa0.78□□□□□ -2.28
TCF4-264ENST00000628391 KRTAP4-5Q9BYR2 181 aa0.78□□□□□ -2.28
TCF4-264ENST00000628391 DNAH6Q9C0G6 4158 aa0.78□□□□□ -2.28
TCF4-264ENST00000628391 DMBT1Q9UGM3 2413 aaPredicted RBP0.78□□□□□ -2.28
TCF4-264ENST00000628391 HUWE1Q7Z6Z7 4374 aaKnown RBP0.78□□□□□ -2.28
TCF4-264ENST00000628391 PLECQ15149 4684 aaKnown RBP0.78□□□□□ -2.29
TCF4-264ENST00000628391 STARD9Q9P2P6 4700 aa0.77□□□□□ -2.29
TCF4-264ENST00000628391 KRTAP10-4P60372 401 aaPredicted RBP0.77□□□□□ -2.29
TCF4-264ENST00000628391 KMT2AQ03164 3969 aa0.77□□□□□ -2.29
TCF4-264ENST00000628391 DNAH2Q9P225 4427 aa0.76□□□□□ -2.29
TCF4-264ENST00000628391 LCE3AQ5TA76 89 aa0.76□□□□□ -2.29
TCF4-264ENST00000628391 KRTAP8-1Q8IUC2 63 aa0.76□□□□□ -2.29
TCF4-264ENST00000628391 DYNC1H1Q14204 4646 aaKnown RBP0.75□□□□□ -2.29
TCF4-264ENST00000628391 KRTAP10-12P60413 245 aa0.75□□□□□ -2.29
TCF4-264ENST00000628391 FAT1Q14517 4588 aa0.75□□□□□ -2.29
TCF4-264ENST00000628391 PKHD1L1Q86WI1 4243 aa0.74□□□□□ -2.29
TCF4-264ENST00000628391 SYNE2Q8WXH0 6885 aaKnown RBP0.74□□□□□ -2.29
TCF4-264ENST00000628391 PKHD1P08F94 4074 aa0.74□□□□□ -2.29
TCF4-264ENST00000628391 HSPG2P98160 4391 aa0.73□□□□□ -2.29
TCF4-264ENST00000628391 SMR3BP02814 79 aaPredicted RBP0.73□□□□□ -2.29
TCF4-264ENST00000628391 KRTAP10-5P60370 271 aa0.73□□□□□ -2.29
TCF4-264ENST00000628391 GPR98Q8WXG9 6306 aa0.73□□□□□ -2.29
TCF4-264ENST00000628391 LRP1Q07954 4544 aaKnown RBP0.72□□□□□ -2.29
TCF4-264ENST00000628391 LRP2P98164 4655 aa0.72□□□□□ -2.29
TCF4-264ENST00000628391 DNAH5Q8TE73 4624 aa0.72□□□□□ -2.29
TCF4-264ENST00000628391 FAT2Q9NYQ8 4349 aa0.72□□□□□ -2.29
TCF4-264ENST00000628391 APOBP04114 4563 aaKnown RBP0.72□□□□□ -2.29
TCF4-264ENST00000628391 KRTAP2-3P0C7H8 128 aa0.72□□□□□ -2.29
TCF4-264ENST00000628391 KRTAP12-3P60328 96 aa0.72□□□□□ -2.29
TCF4-264ENST00000628391 KRTAP2-4Q9BYR9 128 aa0.72□□□□□ -2.29
TCF4-264ENST00000628391 KRTAP2-1Q9BYU5 128 aa0.72□□□□□ -2.29
TCF4-264ENST00000628391 KRTAP9-7A8MTY7 169 aa0.71□□□□□ -2.3
TCF4-264ENST00000628391 M0R2T5 61 aa0.71□□□□□ -2.3
TCF4-264ENST00000628391 TNXBP22105 4242 aa0.71□□□□□ -2.3
TCF4-264ENST00000628391 NEBP20929 6669 aa0.7□□□□□ -2.3
TCF4-264ENST00000628391 SPRR2GQ9BYE4 73 aa0.7□□□□□ -2.3
TCF4-264ENST00000628391 VPS13BQ7Z7G8 4022 aa0.7□□□□□ -2.3
TCF4-264ENST00000628391 SSPOA2VEC9 5147 aa0.69□□□□□ -2.3
TCF4-264ENST00000628391 LCE3CQ5T5A8 94 aa0.69□□□□□ -2.3
TCF4-264ENST00000628391 CRCT1Q9UGL9 99 aa0.69□□□□□ -2.3
TCF4-264ENST00000628391 LRP1BQ9NZR2 4599 aa0.69□□□□□ -2.3
TCF4-264ENST00000628391 FLGP20930 4061 aaPredicted RBP0.69□□□□□ -2.3
TCF4-264ENST00000628391 PKD1P98161 4303 aa0.68□□□□□ -2.3
TCF4-264ENST00000628391 MT1HL1P0DM35 61 aa0.68□□□□□ -2.3
TCF4-264ENST00000628391 KRTAP19-2Q3LHN2 52 aa0.68□□□□□ -2.3
TCF4-264ENST00000628391 KRTAP2-2Q9BYT5 123 aa0.68□□□□□ -2.3
TCF4-264ENST00000628391 FAT3Q8TDW7 4589 aa0.68□□□□□ -2.3
TCF4-264ENST00000628391 MACF1Q9UPN3 7388 aaKnown RBP0.68□□□□□ -2.3
TCF4-264ENST00000628391 USH2AO75445 5202 aa0.67□□□□□ -2.3
TCF4-264ENST00000628391 KRTAP10-7P60409 375 aaPredicted RBP0.67□□□□□ -2.3
TCF4-264ENST00000628391 KRTAP19-4Q3LI73 84 aa0.67□□□□□ -2.3
TCF4-264ENST00000628391 MUC12Q9UKN1 5478 aa0.66□□□□□ -2.3
TCF4-264ENST00000628391 KRTAP9-1A8MXZ3 250 aaPredicted RBP0.66□□□□□ -2.3
TCF4-264ENST00000628391 KRTAP19-1Q8IUB9 90 aa0.66□□□□□ -2.3
TCF4-264ENST00000628391 KRTAP4-1Q9BYQ7 146 aa0.66□□□□□ -2.3
TCF4-264ENST00000628391 LPAP08519 4548 aa0.66□□□□□ -2.3
TCF4-264ENST00000628391 KRTAP9-6A8MVA2 160 aa0.65□□□□□ -2.31
TCF4-264ENST00000628391 KRTAP12-4P60329 112 aa0.65□□□□□ -2.31
TCF4-264ENST00000628391 KRTAP19-8Q3LI54 63 aa0.65□□□□□ -2.31
TCF4-264ENST00000628391 KRTAP19-5Q3LI72 72 aa0.65□□□□□ -2.31
TCF4-264ENST00000628391 KMT2DO14686 5537 aa0.65□□□□□ -2.31
TCF4-264ENST00000628391 MT1XP80297 61 aa0.64□□□□□ -2.31
TCF4-264ENST00000628391 KRTAP6-3Q3LI67 103 aa0.64□□□□□ -2.31
TCF4-264ENST00000628391 LCE1AQ5T7P2 110 aa0.63□□□□□ -2.31
TCF4-264ENST00000628391 FCGBPQ9Y6R7 5405 aaPredicted RBP0.62□□□□□ -2.31
TCF4-264ENST00000628391 MT1BP07438 61 aa0.62□□□□□ -2.31
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms