RNA–Protein interactions for RNA: ENST00000619445.1

UPF3B-204, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 5 BASIC

Gene UPF3B, Length 1,385 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-204ENST00000619445 PRO0461Q9UI25 63 aa5.34□□□□□ -1.55
UPF3B-204ENST00000619445 CRIPTQ9P021 101 aa5.33□□□□□ -1.56
UPF3B-204ENST00000619445 K7EP34 96 aa5.32□□□□□ -1.56
UPF3B-204ENST00000619445 NEBP20929 6669 aa5.32□□□□□ -1.56
UPF3B-204ENST00000619445 KRTAP10-5P60370 271 aa5.3□□□□□ -1.56
UPF3B-204ENST00000619445 LOC105371267A0A1B0GV96 52 aa5.29□□□□□ -1.56
UPF3B-204ENST00000619445 GTF2H5Q6ZYL4 71 aa5.29□□□□□ -1.56
UPF3B-204ENST00000619445 LOC101927531A0A1B0GV80 90 aa5.29□□□□□ -1.56
UPF3B-204ENST00000619445 CYP4F30PQ9H0H9 118 aa5.29□□□□□ -1.56
UPF3B-204ENST00000619445 TRAV22A0A0B4J277 110 aa5.28□□□□□ -1.56
UPF3B-204ENST00000619445 F8W1H4 67 aa5.27□□□□□ -1.57
UPF3B-204ENST00000619445 IMUPQ9GZP8 106 aa5.27□□□□□ -1.57
UPF3B-204ENST00000619445 MUC12Q9UKN1 5478 aa5.25□□□□□ -1.57
UPF3B-204ENST00000619445 KRTAP4-7Q9BYR0 210 aa5.24□□□□□ -1.57
UPF3B-204ENST00000619445 H0YAA0 97 aa5.22□□□□□ -1.57
UPF3B-204ENST00000619445 ETDBQ3ZM63 59 aa5.22□□□□□ -1.57
UPF3B-204ENST00000619445 ATOX1O00244 68 aa5.21□□□□□ -1.58
UPF3B-204ENST00000619445 NDUFC1O43677 76 aa5.21□□□□□ -1.58
UPF3B-204ENST00000619445 ACYP1P07311 99 aa5.21□□□□□ -1.58
UPF3B-204ENST00000619445 KRTAP5-9P26371 169 aa5.21□□□□□ -1.58
UPF3B-204ENST00000619445 LCE1DQ5T752 114 aa5.21□□□□□ -1.58
UPF3B-204ENST00000619445 ATP5EP2Q5VTU8 51 aa5.2□□□□□ -1.58
UPF3B-204ENST00000619445 A0A0A0MQY5 61 aa5.19□□□□□ -1.58
UPF3B-204ENST00000619445 A8MUN3 132 aa5.18□□□□□ -1.58
UPF3B-204ENST00000619445 UQCRQO14949 82 aa5.18□□□□□ -1.58
UPF3B-204ENST00000619445 KRTAP20-1Q3LI63 56 aa5.16□□□□□ -1.58
UPF3B-204ENST00000619445 KMT2DO14686 5537 aa5.15□□□□□ -1.58
UPF3B-204ENST00000619445 A0A087WVE0 104 aa5.15□□□□□ -1.59
UPF3B-204ENST00000619445 FAM240AA0A1B0GVK7 77 aa5.15□□□□□ -1.59
UPF3B-204ENST00000619445 PRO2289Q9P1D8 64 aa5.15□□□□□ -1.59
UPF3B-204ENST00000619445 MDN1Q9NU22 5596 aa5.14□□□□□ -1.59
UPF3B-204ENST00000619445 H0Y9P7 68 aa5.14□□□□□ -1.59
UPF3B-204ENST00000619445 KRTAP5-3Q6L8H2 238 aa5.14□□□□□ -1.59
UPF3B-204ENST00000619445 HIST1H4AP62805 103 aaKnown RBP5.13□□□□□ -1.59
UPF3B-204ENST00000619445 LCE4AQ5TA78 99 aa5.11□□□□□ -1.59
UPF3B-204ENST00000619445 ADM2Q7Z4H4 148 aa5.09□□□□□ -1.59
UPF3B-204ENST00000619445 C20orf197Q8N268 126 aa5.07□□□□□ -1.6
UPF3B-204ENST00000619445 KRTAP4-9Q9BYQ8 210 aa5.07□□□□□ -1.6
UPF3B-204ENST00000619445 PLAC4Q8WY50 150 aa5.06□□□□□ -1.6
UPF3B-204ENST00000619445 MP68P56378 58 aa5.05□□□□□ -1.6
UPF3B-204ENST00000619445 KRTAP4-2Q9BYR5 136 aa5.05□□□□□ -1.6
UPF3B-204ENST00000619445 LINC00208Q96KT6 92 aa5.04□□□□□ -1.6
UPF3B-204ENST00000619445 LINC00643Q86TS7 51 aa5.04□□□□□ -1.6
UPF3B-204ENST00000619445 R4GN34 69 aa5.03□□□□□ -1.6
UPF3B-204ENST00000619445 PCP4L1A6NKN8 68 aa5.02□□□□□ -1.61
UPF3B-204ENST00000619445 KRTAP2-3P0C7H8 128 aa5.02□□□□□ -1.61
UPF3B-204ENST00000619445 KRTAP2-4Q9BYR9 128 aa5.02□□□□□ -1.61
UPF3B-204ENST00000619445 SPRR2FQ96RM1 72 aa5.01□□□□□ -1.61
UPF3B-204ENST00000619445 MT1XP80297 61 aa4.99□□□□□ -1.61
UPF3B-204ENST00000619445 H3BPC8 53 aa4.98□□□□□ -1.61
UPF3B-204ENST00000619445 KRTAP12-2P59991 146 aa4.97□□□□□ -1.61
UPF3B-204ENST00000619445 OCR1Q9BZK8 76 aa4.97□□□□□ -1.61
UPF3B-204ENST00000619445 SPRR2EP22531 72 aa4.96□□□□□ -1.62
UPF3B-204ENST00000619445 SPRR2BP35325 72 aa4.96□□□□□ -1.62
UPF3B-204ENST00000619445 SPRR2AP35326 72 aa4.96□□□□□ -1.62
UPF3B-204ENST00000619445 KRTAP8-1Q8IUC2 63 aa4.96□□□□□ -1.62
UPF3B-204ENST00000619445 M0QZ58 72 aa4.94□□□□□ -1.62
UPF3B-204ENST00000619445 DMAC1Q96GE9 116 aa4.92□□□□□ -1.62
UPF3B-204ENST00000619445 P0C880 135 aa4.91□□□□□ -1.62
UPF3B-204ENST00000619445 SCGB1A1P11684 91 aa4.87□□□□□ -1.63
UPF3B-204ENST00000619445 TRAV7A0A075B6U4 112 aa4.86□□□□□ -1.63
UPF3B-204ENST00000619445 J3QR89 54 aa4.86□□□□□ -1.63
UPF3B-204ENST00000619445 LINC01554Q52M75 96 aa4.86□□□□□ -1.63
UPF3B-204ENST00000619445 LCE1AQ5T7P2 110 aa4.86□□□□□ -1.63
UPF3B-204ENST00000619445 KRTAP4-11Q9BYQ6 195 aa4.86□□□□□ -1.63
UPF3B-204ENST00000619445 KRTAP2-2Q9BYT5 123 aa4.85□□□□□ -1.63
UPF3B-204ENST00000619445 KRTAP2-1Q9BYU5 128 aa4.85□□□□□ -1.63
UPF3B-204ENST00000619445 SPTSSBQ8NFR3 76 aa4.84□□□□□ -1.63
UPF3B-204ENST00000619445 KRTAP15-1Q3LI76 137 aa4.82□□□□□ -1.64
UPF3B-204ENST00000619445 ACYP2P14621 99 aa4.81□□□□□ -1.64
UPF3B-204ENST00000619445 SPRR2DP22532 72 aa4.8□□□□□ -1.64
UPF3B-204ENST00000619445 MT-ATP8P03928 68 aa4.79□□□□□ -1.64
UPF3B-204ENST00000619445 KRTAP10-12P60413 245 aa4.77□□□□□ -1.65
UPF3B-204ENST00000619445 SMIM20Q8N5G0 67 aa4.75□□□□□ -1.65
UPF3B-204ENST00000619445 KRTAP10-7P60409 375 aaPredicted RBP4.73□□□□□ -1.65
UPF3B-204ENST00000619445 CHKB-CPT1BH3BT56 60 aa4.72□□□□□ -1.65
UPF3B-204ENST00000619445 A0A1B0GV90 55 aa4.71□□□□□ -1.66
UPF3B-204ENST00000619445 LCE5AQ5TCM9 118 aa4.71□□□□□ -1.66
UPF3B-204ENST00000619445 CAMK2N1Q7Z7J9 78 aa4.6□□□□□ -1.67
UPF3B-204ENST00000619445 SPANXA2-OT1Q8N9U9 137 aa4.6□□□□□ -1.67
UPF3B-204ENST00000619445 K7ERU9 68 aa4.57□□□□□ -1.68
UPF3B-204ENST00000619445 GPR98Q8WXG9 6306 aa4.56□□□□□ -1.68
UPF3B-204ENST00000619445 SNURFQ9Y675 71 aa4.54□□□□□ -1.68
UPF3B-204ENST00000619445 KRTAP13-4Q3LI77 160 aa4.51□□□□□ -1.69
UPF3B-204ENST00000619445 SEC61GP60059 68 aa4.5□□□□□ -1.69
UPF3B-204ENST00000619445 SERP1Q9Y6X1 66 aa4.48□□□□□ -1.69
UPF3B-204ENST00000619445 SERP2Q8N6R1 65 aa4.47□□□□□ -1.69
UPF3B-204ENST00000619445 KRTAP19-7Q3SYF9 63 aa4.46□□□□□ -1.7
UPF3B-204ENST00000619445 KRTAP19-3Q7Z4W3 81 aa4.46□□□□□ -1.7
UPF3B-204ENST00000619445 DSTQ03001 7570 aaKnown RBP4.46□□□□□ -1.7
UPF3B-204ENST00000619445 MT1EP04732 61 aa4.44□□□□□ -1.7
UPF3B-204ENST00000619445 COA5Q86WW8 74 aa4.42□□□□□ -1.7
UPF3B-204ENST00000619445 A0A0D9SG42 100 aa4.4□□□□□ -1.71
UPF3B-204ENST00000619445 A0A1B0GU33 70 aa4.38□□□□□ -1.71
UPF3B-204ENST00000619445 PP632Q6XCG6 107 aa4.38□□□□□ -1.71
UPF3B-204ENST00000619445 MT1GP13640 62 aa4.37□□□□□ -1.71
UPF3B-204ENST00000619445 SPINT4Q6UDR6 99 aa4.37□□□□□ -1.71
UPF3B-204ENST00000619445 CYSTM1Q9H1C7 97 aa4.37□□□□□ -1.71
UPF3B-204ENST00000619445 SPATA8Q6RVD6 105 aa4.34□□□□□ -1.71
UPF3B-204ENST00000619445 PRAC1Q96KF2 57 aa4.33□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 73.3 ms