RNA–Protein interactions for RNA: ENST00000617451.4

PTPRF-216, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 5 BASIC

Gene PTPRF, Length 1,129 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-216ENST00000617451 SPRR2FQ96RM1 72 aa10.59□□□□□ -0.71
PTPRF-216ENST00000617451 LOC101927531A0A1B0GV80 90 aa10.57□□□□□ -0.72
PTPRF-216ENST00000617451 TRAV22A0A0B4J277 110 aa10.56□□□□□ -0.72
PTPRF-216ENST00000617451 K7EP34 96 aa10.55□□□□□ -0.72
PTPRF-216ENST00000617451 NDUFC1O43677 76 aa10.54□□□□□ -0.72
PTPRF-216ENST00000617451 SPRR2EP22531 72 aa10.53□□□□□ -0.72
PTPRF-216ENST00000617451 SPRR2BP35325 72 aa10.53□□□□□ -0.72
PTPRF-216ENST00000617451 SPRR2AP35326 72 aa10.53□□□□□ -0.72
PTPRF-216ENST00000617451 PRO2289Q9P1D8 64 aa10.51□□□□□ -0.73
PTPRF-216ENST00000617451 MT1XP80297 61 aa10.49□□□□□ -0.73
PTPRF-216ENST00000617451 COL5A1-AS1Q5SY13 56 aa10.48□□□□□ -0.73
PTPRF-216ENST00000617451 A8MUN3 132 aa10.46□□□□□ -0.73
PTPRF-216ENST00000617451 LOC105371267A0A1B0GV96 52 aa10.45□□□□□ -0.74
PTPRF-216ENST00000617451 ADM2Q7Z4H4 148 aa10.45□□□□□ -0.74
PTPRF-216ENST00000617451 KRTAP8-1Q8IUC2 63 aa10.4□□□□□ -0.74
PTPRF-216ENST00000617451 ETDBQ3ZM63 59 aa10.37□□□□□ -0.75
PTPRF-216ENST00000617451 LCE1AQ5T7P2 110 aa10.36□□□□□ -0.75
PTPRF-216ENST00000617451 PLAC4Q8WY50 150 aa10.36□□□□□ -0.75
PTPRF-216ENST00000617451 F8W1H4 67 aa10.35□□□□□ -0.75
PTPRF-216ENST00000617451 ACYP1P07311 99 aa10.35□□□□□ -0.75
PTPRF-216ENST00000617451 UQCRQO14949 82 aa10.34□□□□□ -0.75
PTPRF-216ENST00000617451 H0Y9P7 68 aa10.33□□□□□ -0.76
PTPRF-216ENST00000617451 ATOX1O00244 68 aa10.33□□□□□ -0.76
PTPRF-216ENST00000617451 GTF2H5Q6ZYL4 71 aa10.33□□□□□ -0.76
PTPRF-216ENST00000617451 KRTAP12-2P59991 146 aa10.32□□□□□ -0.76
PTPRF-216ENST00000617451 KRTAP2-2Q9BYT5 123 aa10.32□□□□□ -0.76
PTPRF-216ENST00000617451 KRTAP2-1Q9BYU5 128 aa10.32□□□□□ -0.76
PTPRF-216ENST00000617451 R4GN34 69 aa10.22□□□□□ -0.77
PTPRF-216ENST00000617451 HIST1H4AP62805 103 aaKnown RBP10.2□□□□□ -0.78
PTPRF-216ENST00000617451 ATP5EP2Q5VTU8 51 aa10.19□□□□□ -0.78
PTPRF-216ENST00000617451 KRTAP4-8A0A0G2JLE6 195 aa10.18□□□□□ -0.78
PTPRF-216ENST00000617451 SPRR2DP22532 72 aa10.18□□□□□ -0.78
PTPRF-216ENST00000617451 KRTAP4-8Q9BYQ9 185 aa10.18□□□□□ -0.78
PTPRF-216ENST00000617451 P0C880 135 aa10.17□□□□□ -0.78
PTPRF-216ENST00000617451 LINC00208Q96KT6 92 aa10.13□□□□□ -0.79
PTPRF-216ENST00000617451 M0QZ58 72 aa10.11□□□□□ -0.79
PTPRF-216ENST00000617451 C20orf197Q8N268 126 aa10.11□□□□□ -0.79
PTPRF-216ENST00000617451 FAM240AA0A1B0GVK7 77 aa10.09□□□□□ -0.79
PTPRF-216ENST00000617451 KRTAP3-2Q9BYR7 98 aa10.01□□□□□ -0.81
PTPRF-216ENST00000617451 MP68P56378 58 aa9.99□□□□□ -0.81
PTPRF-216ENST00000617451 KRTAP10-7P60409 375 aaPredicted RBP9.99□□□□□ -0.81
PTPRF-216ENST00000617451 LINC01554Q52M75 96 aa9.99□□□□□ -0.81
PTPRF-216ENST00000617451 KRTAP10-12P60413 245 aa9.96□□□□□ -0.82
PTPRF-216ENST00000617451 OCR1Q9BZK8 76 aa9.96□□□□□ -0.82
PTPRF-216ENST00000617451 LCE3BQ5TA77 95 aa9.95□□□□□ -0.82
PTPRF-216ENST00000617451 LINC00643Q86TS7 51 aa9.91□□□□□ -0.82
PTPRF-216ENST00000617451 DMAC1Q96GE9 116 aa9.89□□□□□ -0.83
PTPRF-216ENST00000617451 PCP4L1A6NKN8 68 aa9.82□□□□□ -0.84
PTPRF-216ENST00000617451 H3BPC8 53 aa9.8□□□□□ -0.84
PTPRF-216ENST00000617451 MT-ATP8P03928 68 aa9.68□□□□□ -0.86
PTPRF-216ENST00000617451 TRAV7A0A075B6U4 112 aa9.67□□□□□ -0.86
PTPRF-216ENST00000617451 GPR98Q8WXG9 6306 aa9.63□□□□□ -0.87
PTPRF-216ENST00000617451 DSTQ03001 7570 aaKnown RBP9.57□□□□□ -0.88
PTPRF-216ENST00000617451 ACYP2P14621 99 aa9.55□□□□□ -0.88
PTPRF-216ENST00000617451 SCGB1A1P11684 91 aa9.54□□□□□ -0.88
PTPRF-216ENST00000617451 SPTSSBQ8NFR3 76 aa9.52□□□□□ -0.89
PTPRF-216ENST00000617451 LCE5AQ5TCM9 118 aa9.44□□□□□ -0.9
PTPRF-216ENST00000617451 KRTAP19-7Q3SYF9 63 aa9.39□□□□□ -0.91
PTPRF-216ENST00000617451 KRTAP4-9Q9BYQ8 210 aa9.38□□□□□ -0.91
PTPRF-216ENST00000617451 CHKB-CPT1BH3BT56 60 aa9.35□□□□□ -0.91
PTPRF-216ENST00000617451 KRTAP19-3Q7Z4W3 81 aa9.33□□□□□ -0.92
PTPRF-216ENST00000617451 MT1EP04732 61 aa9.32□□□□□ -0.92
PTPRF-216ENST00000617451 KRTAP13-4Q3LI77 160 aa9.31□□□□□ -0.92
PTPRF-216ENST00000617451 CAMK2N1Q7Z7J9 78 aa9.31□□□□□ -0.92
PTPRF-216ENST00000617451 J3QR89 54 aa9.29□□□□□ -0.92
PTPRF-216ENST00000617451 A0A1B0GV90 55 aa9.25□□□□□ -0.93
PTPRF-216ENST00000617451 SMIM20Q8N5G0 67 aa9.17□□□□□ -0.94
PTPRF-216ENST00000617451 CYSTM1Q9H1C7 97 aa9.13□□□□□ -0.95
PTPRF-216ENST00000617451 LCE1DQ5T752 114 aa9.12□□□□□ -0.95
PTPRF-216ENST00000617451 SNURFQ9Y675 71 aa9.07□□□□□ -0.96
PTPRF-216ENST00000617451 HMCN1Q96RW7 5635 aa9.07□□□□□ -0.96
PTPRF-216ENST00000617451 MT1GP13640 62 aa9.06□□□□□ -0.96
PTPRF-216ENST00000617451 A0A0D9SG42 100 aa9.03□□□□□ -0.96
PTPRF-216ENST00000617451 SPANXA2-OT1Q8N9U9 137 aa9.03□□□□□ -0.96
PTPRF-216ENST00000617451 KRTAP19-5Q3LI72 72 aa9.02□□□□□ -0.97
PTPRF-216ENST00000617451 LCE4AQ5TA78 99 aa8.98□□□□□ -0.97
PTPRF-216ENST00000617451 PP632Q6XCG6 107 aa8.97□□□□□ -0.97
PTPRF-216ENST00000617451 MT4P47944 62 aa8.94□□□□□ -0.98
PTPRF-216ENST00000617451 MT1MQ8N339 61 aa8.9□□□□□ -0.98
PTPRF-216ENST00000617451 AHNAK2Q8IVF2 5795 aa8.89□□□□□ -0.99
PTPRF-216ENST00000617451 SPINT4Q6UDR6 99 aa8.85□□□□□ -0.99
PTPRF-216ENST00000617451 SPATA8Q6RVD6 105 aa8.84□□□□□ -0.99
PTPRF-216ENST00000617451 MT1LQ93083 61 aa8.83□□□□□ -1
PTPRF-216ENST00000617451 SEC61GP60059 68 aa8.81□□□□□ -1
PTPRF-216ENST00000617451 SERP1Q9Y6X1 66 aa8.81□□□□□ -1
PTPRF-216ENST00000617451 COA5Q86WW8 74 aa8.79□□□□□ -1
PTPRF-216ENST00000617451 KRTAP12-1P59990 96 aa8.78□□□□□ -1
PTPRF-216ENST00000617451 KRTAP5-4Q6L8H1 288 aa8.76□□□□□ -1.01
PTPRF-216ENST00000617451 A0A1B0GU33 70 aa8.73□□□□□ -1.01
PTPRF-216ENST00000617451 K7ERU9 68 aa8.71□□□□□ -1.02
PTPRF-216ENST00000617451 SERP2Q8N6R1 65 aa8.71□□□□□ -1.02
PTPRF-216ENST00000617451 KRTAP4-3Q9BYR4 195 aa8.71□□□□□ -1.02
PTPRF-216ENST00000617451 KRTAP5-10Q6L8G5 202 aa8.7□□□□□ -1.02
PTPRF-216ENST00000617451 KRTAP4-6Q9BYQ5 205 aa8.67□□□□□ -1.02
PTPRF-216ENST00000617451 C10orf95Q9H7T3 257 aa8.61□□□□□ -1.03
PTPRF-216ENST00000617451 LCE3AQ5TA76 89 aa8.59□□□□□ -1.03
PTPRF-216ENST00000617451 SMIM26A0A096LP01 95 aa8.48□□□□□ -1.05
PTPRF-216ENST00000617451 TNP1P09430 55 aa8.48□□□□□ -1.05
PTPRF-216ENST00000617451 A8MU10 97 aa8.43□□□□□ -1.06
PTPRF-216ENST00000617451 KRTAP5-7Q6L8G8 165 aa8.42□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms