RNA–Protein interactions for RNA: ENST00000617445.4

CCDC28A-203, Transcript of coiled-coil domain containing 28A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28A, Length 1,240 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-203ENST00000617445 A0A087WVE0 104 aa8.57□□□□□ -1.04
CCDC28A-203ENST00000617445 J3QR89 54 aa8.57□□□□□ -1.04
CCDC28A-203ENST00000617445 KLKP1Q107X0 134 aa8.57□□□□□ -1.04
CCDC28A-203ENST00000617445 KRTAP19-8Q3LI54 63 aa8.57□□□□□ -1.04
CCDC28A-203ENST00000617445 ATOX1O00244 68 aa8.56□□□□□ -1.04
CCDC28A-203ENST00000617445 MT1BP07438 61 aa8.55□□□□□ -1.04
CCDC28A-203ENST00000617445 A6NN06 94 aa8.54□□□□□ -1.04
CCDC28A-203ENST00000617445 H0Y9P7 68 aa8.52□□□□□ -1.05
CCDC28A-203ENST00000617445 CRIPTQ9P021 101 aa8.5□□□□□ -1.05
CCDC28A-203ENST00000617445 IMUPQ9GZP8 106 aa8.45□□□□□ -1.06
CCDC28A-203ENST00000617445 OCR1Q9BZK8 76 aa8.44□□□□□ -1.06
CCDC28A-203ENST00000617445 KRTAP10-5P60370 271 aa8.42□□□□□ -1.06
CCDC28A-203ENST00000617445 NDUFC1O43677 76 aa8.41□□□□□ -1.06
CCDC28A-203ENST00000617445 MP68P56378 58 aa8.41□□□□□ -1.06
CCDC28A-203ENST00000617445 LINC00208Q96KT6 92 aa8.41□□□□□ -1.06
CCDC28A-203ENST00000617445 H0YAA0 97 aa8.39□□□□□ -1.07
CCDC28A-203ENST00000617445 A8MUN3 132 aa8.38□□□□□ -1.07
CCDC28A-203ENST00000617445 SCGB1A1P11684 91 aa8.33□□□□□ -1.08
CCDC28A-203ENST00000617445 H3BPC8 53 aa8.32□□□□□ -1.08
CCDC28A-203ENST00000617445 K7ERU9 68 aa8.29□□□□□ -1.08
CCDC28A-203ENST00000617445 ADM2Q7Z4H4 148 aa8.23□□□□□ -1.09
CCDC28A-203ENST00000617445 MT-ATP8P03928 68 aa8.21□□□□□ -1.1
CCDC28A-203ENST00000617445 NEBP20929 6669 aa8.19□□□□□ -1.1
CCDC28A-203ENST00000617445 KRTAP5-9P26371 169 aa8.18□□□□□ -1.1
CCDC28A-203ENST00000617445 SMIM20Q8N5G0 67 aa8.16□□□□□ -1.1
CCDC28A-203ENST00000617445 DMAC1Q96GE9 116 aa8.13□□□□□ -1.11
CCDC28A-203ENST00000617445 PRO2289Q9P1D8 64 aa8.13□□□□□ -1.11
CCDC28A-203ENST00000617445 MUC12Q9UKN1 5478 aa8.12□□□□□ -1.11
CCDC28A-203ENST00000617445 TRAV7A0A075B6U4 112 aa8.11□□□□□ -1.11
CCDC28A-203ENST00000617445 C20orf197Q8N268 126 aa8.11□□□□□ -1.11
CCDC28A-203ENST00000617445 PLAC4Q8WY50 150 aa8.08□□□□□ -1.12
CCDC28A-203ENST00000617445 R4GN34 69 aa8.06□□□□□ -1.12
CCDC28A-203ENST00000617445 KRTAP20-1Q3LI63 56 aa8.01□□□□□ -1.13
CCDC28A-203ENST00000617445 P0C880 135 aa8□□□□□ -1.13
CCDC28A-203ENST00000617445 MT1XP80297 61 aa8□□□□□ -1.13
CCDC28A-203ENST00000617445 KMT2DO14686 5537 aa8□□□□□ -1.13
CCDC28A-203ENST00000617445 ACYP2P14621 99 aa7.98□□□□□ -1.13
CCDC28A-203ENST00000617445 M0QZ58 72 aa7.96□□□□□ -1.14
CCDC28A-203ENST00000617445 SNURFQ9Y675 71 aa7.91□□□□□ -1.14
CCDC28A-203ENST00000617445 MDN1Q9NU22 5596 aa7.89□□□□□ -1.15
CCDC28A-203ENST00000617445 KRTAP12-2P59991 146 aa7.89□□□□□ -1.15
CCDC28A-203ENST00000617445 SERP2Q8N6R1 65 aa7.89□□□□□ -1.15
CCDC28A-203ENST00000617445 SPTSSBQ8NFR3 76 aa7.88□□□□□ -1.15
CCDC28A-203ENST00000617445 SPRR2FQ96RM1 72 aa7.88□□□□□ -1.15
CCDC28A-203ENST00000617445 KRTAP8-1Q8IUC2 63 aa7.84□□□□□ -1.15
CCDC28A-203ENST00000617445 LINC01554Q52M75 96 aa7.83□□□□□ -1.16
CCDC28A-203ENST00000617445 SPANXA2-OT1Q8N9U9 137 aa7.83□□□□□ -1.16
CCDC28A-203ENST00000617445 CHKB-CPT1BH3BT56 60 aa7.81□□□□□ -1.16
CCDC28A-203ENST00000617445 KRTAP2-3P0C7H8 128 aa7.81□□□□□ -1.16
CCDC28A-203ENST00000617445 KRTAP2-4Q9BYR9 128 aa7.81□□□□□ -1.16
CCDC28A-203ENST00000617445 SPRR2EP22531 72 aa7.79□□□□□ -1.16
CCDC28A-203ENST00000617445 SPRR2BP35325 72 aa7.79□□□□□ -1.16
CCDC28A-203ENST00000617445 SPRR2AP35326 72 aa7.79□□□□□ -1.16
CCDC28A-203ENST00000617445 LCE1AQ5T7P2 110 aa7.68□□□□□ -1.18
CCDC28A-203ENST00000617445 COX7CP15954 63 aa7.67□□□□□ -1.18
CCDC28A-203ENST00000617445 KRTAP4-8A0A0G2JLE6 195 aa7.66□□□□□ -1.18
CCDC28A-203ENST00000617445 KRTAP4-8Q9BYQ9 185 aa7.66□□□□□ -1.18
CCDC28A-203ENST00000617445 KRTAP10-12P60413 245 aa7.63□□□□□ -1.19
CCDC28A-203ENST00000617445 KRTAP10-7P60409 375 aaPredicted RBP7.62□□□□□ -1.19
CCDC28A-203ENST00000617445 LOC100996750A0A140TA64 210 aa7.59□□□□□ -1.19
CCDC28A-203ENST00000617445 KRTAP4-6Q9BYQ5 205 aa7.59□□□□□ -1.19
CCDC28A-203ENST00000617445 COA5Q86WW8 74 aa7.57□□□□□ -1.2
CCDC28A-203ENST00000617445 KRTAP2-2Q9BYT5 123 aa7.56□□□□□ -1.2
CCDC28A-203ENST00000617445 KRTAP2-1Q9BYU5 128 aa7.56□□□□□ -1.2
CCDC28A-203ENST00000617445 SPRR2DP22532 72 aa7.54□□□□□ -1.2
CCDC28A-203ENST00000617445 H7BZZ5 65 aa7.52□□□□□ -1.21
CCDC28A-203ENST00000617445 CYSTM1Q9H1C7 97 aa7.48□□□□□ -1.21
CCDC28A-203ENST00000617445 ANAPC13Q9BS18 74 aa7.46□□□□□ -1.22
CCDC28A-203ENST00000617445 SEC61GP60059 68 aa7.44□□□□□ -1.22
CCDC28A-203ENST00000617445 KRTAP13-4Q3LI77 160 aa7.42□□□□□ -1.22
CCDC28A-203ENST00000617445 SERP1Q9Y6X1 66 aa7.41□□□□□ -1.22
CCDC28A-203ENST00000617445 CAMK2N1Q7Z7J9 78 aa7.39□□□□□ -1.23
CCDC28A-203ENST00000617445 LCE3BQ5TA77 95 aa7.34□□□□□ -1.23
CCDC28A-203ENST00000617445 CCDC179H3BU77 68 aa7.28□□□□□ -1.24
CCDC28A-203ENST00000617445 A0A1B0GU33 70 aa7.27□□□□□ -1.25
CCDC28A-203ENST00000617445 SPATA8Q6RVD6 105 aa7.23□□□□□ -1.25
CCDC28A-203ENST00000617445 A0A0D9SG42 100 aa7.21□□□□□ -1.26
CCDC28A-203ENST00000617445 ATP5EP56381 51 aaPredicted RBP7.21□□□□□ -1.26
CCDC28A-203ENST00000617445 A0A1B0GU69 56 aa7.2□□□□□ -1.26
CCDC28A-203ENST00000617445 KRTAP19-7Q3SYF9 63 aa7.15□□□□□ -1.26
CCDC28A-203ENST00000617445 LCE5AQ5TCM9 118 aa7.12□□□□□ -1.27
CCDC28A-203ENST00000617445 SPINT4Q6UDR6 99 aa7.12□□□□□ -1.27
CCDC28A-203ENST00000617445 MT1EP04732 61 aa7.11□□□□□ -1.27
CCDC28A-203ENST00000617445 SMIM26A0A096LP01 95 aa7.09□□□□□ -1.27
CCDC28A-203ENST00000617445 KRTAP19-3Q7Z4W3 81 aa7.09□□□□□ -1.27
CCDC28A-203ENST00000617445 KRTAP12-1P59990 96 aa7.08□□□□□ -1.28
CCDC28A-203ENST00000617445 TMEM258P61165 79 aa7.05□□□□□ -1.28
CCDC28A-203ENST00000617445 PRR15LQ9BU68 103 aa7.05□□□□□ -1.28
CCDC28A-203ENST00000617445 DSTQ03001 7570 aaKnown RBP7□□□□□ -1.29
CCDC28A-203ENST00000617445 LINC01558Q9Y6Z2 57 aa6.99□□□□□ -1.29
CCDC28A-203ENST00000617445 A8MU10 97 aa6.97□□□□□ -1.29
CCDC28A-203ENST00000617445 MT1GP13640 62 aa6.94□□□□□ -1.3
CCDC28A-203ENST00000617445 KRTAP19-5Q3LI72 72 aa6.94□□□□□ -1.3
CCDC28A-203ENST00000617445 PP632Q6XCG6 107 aa6.9□□□□□ -1.3
CCDC28A-203ENST00000617445 UQCR11O14957 56 aa6.81□□□□□ -1.32
CCDC28A-203ENST00000617445 TNP1P09430 55 aa6.81□□□□□ -1.32
CCDC28A-203ENST00000617445 KRTAP4-9Q9BYQ8 210 aa6.81□□□□□ -1.32
CCDC28A-203ENST00000617445 MT1LQ93083 61 aa6.78□□□□□ -1.32
CCDC28A-203ENST00000617445 MT1MQ8N339 61 aa6.77□□□□□ -1.33
CCDC28A-203ENST00000617445 C10orf95Q9H7T3 257 aa6.76□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 429.4 ms