RNA–Protein interactions for RNA: ENST00000614496.4

MSH6-213, Transcript of mutS homolog 6, humanhuman

TSL 1 (best) BASIC

Gene MSH6, Length 4,150 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-213ENST00000614496 DYNC2H1Q8NCM8 4307 aaKnown RBP6.35□□□□□ -1.39
MSH6-213ENST00000614496 FAT1Q14517 4588 aa6.33□□□□□ -1.4
MSH6-213ENST00000614496 KRTAP10-6P60371 365 aaPredicted RBP6.32□□□□□ -1.4
MSH6-213ENST00000614496 ALMS1Q8TCU4 4167 aa6.32□□□□□ -1.4
MSH6-213ENST00000614496 CAMK2N1Q7Z7J9 78 aa6.31□□□□□ -1.4
MSH6-213ENST00000614496 VPS13BQ7Z7G8 4022 aa6.31□□□□□ -1.4
MSH6-213ENST00000614496 KRTAP10-4P60372 401 aaPredicted RBP6.31□□□□□ -1.4
MSH6-213ENST00000614496 KRTAP12-2P59991 146 aa6.27□□□□□ -1.41
MSH6-213ENST00000614496 TPRXLQ17RH7 258 aa6.26□□□□□ -1.41
MSH6-213ENST00000614496 KRTAP21-3Q3LHN1 58 aa6.26□□□□□ -1.41
MSH6-213ENST00000614496 KRTAP3-3Q9BYR6 98 aa6.25□□□□□ -1.41
MSH6-213ENST00000614496 SEC61BP60468 96 aaKnown RBP6.25□□□□□ -1.41
MSH6-213ENST00000614496 DYNC1H1Q14204 4646 aaKnown RBP6.21□□□□□ -1.41
MSH6-213ENST00000614496 KRTAP3-2Q9BYR7 98 aa6.21□□□□□ -1.42
MSH6-213ENST00000614496 HYDINQ4G0P3 5121 aa6.2□□□□□ -1.42
MSH6-213ENST00000614496 KRTAP12-1P59990 96 aa6.17□□□□□ -1.42
MSH6-213ENST00000614496 MYCBP2O75592 4640 aa6.1□□□□□ -1.43
MSH6-213ENST00000614496 SACSQ9NZJ4 4579 aa6.09□□□□□ -1.43
MSH6-213ENST00000614496 PKHD1P08F94 4074 aa6.09□□□□□ -1.43
MSH6-213ENST00000614496 MT1HL1P0DM35 61 aa6.06□□□□□ -1.44
MSH6-213ENST00000614496 LRP1Q07954 4544 aaKnown RBP6.02□□□□□ -1.45
MSH6-213ENST00000614496 FAT2Q9NYQ8 4349 aa6.02□□□□□ -1.45
MSH6-213ENST00000614496 M0R2T5 61 aa6□□□□□ -1.45
MSH6-213ENST00000614496 PKD1P98161 4303 aa5.99□□□□□ -1.45
MSH6-213ENST00000614496 PLAC4Q8WY50 150 aa5.97□□□□□ -1.45
MSH6-213ENST00000614496 APOBP04114 4563 aaKnown RBP5.96□□□□□ -1.46
MSH6-213ENST00000614496 KRTAP15-1Q3LI76 137 aa5.88□□□□□ -1.47
MSH6-213ENST00000614496 FAT3Q8TDW7 4589 aa5.88□□□□□ -1.47
MSH6-213ENST00000614496 KRTAP4-5Q9BYR2 181 aa5.87□□□□□ -1.47
MSH6-213ENST00000614496 KIAA1109Q2LD37 5005 aa5.86□□□□□ -1.47
MSH6-213ENST00000614496 RYR1P21817 5038 aa5.85□□□□□ -1.47
MSH6-213ENST00000614496 TNP1P09430 55 aa5.83□□□□□ -1.48
MSH6-213ENST00000614496 LORP23490 312 aaPredicted RBP5.83□□□□□ -1.48
MSH6-213ENST00000614496 KRTAP17-1Q9BYP8 105 aa5.82□□□□□ -1.48
MSH6-213ENST00000614496 PP632Q6XCG6 107 aa5.78□□□□□ -1.48
MSH6-213ENST00000614496 RYR2Q92736 4967 aa5.74□□□□□ -1.49
MSH6-213ENST00000614496 LRP2P98164 4655 aa5.74□□□□□ -1.49
MSH6-213ENST00000614496 RYR3Q15413 4870 aa5.74□□□□□ -1.49
MSH6-213ENST00000614496 HSPG2P98160 4391 aa5.74□□□□□ -1.49
MSH6-213ENST00000614496 KMT2CQ8NEZ4 4911 aaKnown RBP5.72□□□□□ -1.49
MSH6-213ENST00000614496 KRTAP4-1Q9BYQ7 146 aa5.67□□□□□ -1.5
MSH6-213ENST00000614496 PKHD1L1Q86WI1 4243 aa5.66□□□□□ -1.5
MSH6-213ENST00000614496 LPAP08519 4548 aa5.57□□□□□ -1.52
MSH6-213ENST00000614496 TNXBP22105 4242 aa5.57□□□□□ -1.52
MSH6-213ENST00000614496 KRTAP10-10P60014 251 aa5.57□□□□□ -1.52
MSH6-213ENST00000614496 EPPK1P58107 5090 aaKnown RBP5.35□□□□□ -1.55
MSH6-213ENST00000614496 ABCA13Q86UQ4 5058 aa5.34□□□□□ -1.55
MSH6-213ENST00000614496 HERC2O95714 4834 aa5.32□□□□□ -1.56
MSH6-213ENST00000614496 LCE3AQ5TA76 89 aa5.27□□□□□ -1.57
MSH6-213ENST00000614496 MUC2Q02817 5179 aa5.19□□□□□ -1.58
MSH6-213ENST00000614496 KRTAP23-1A1A580 65 aa5.18□□□□□ -1.58
MSH6-213ENST00000614496 KRTAP19-2Q3LHN2 52 aa5.17□□□□□ -1.58
MSH6-213ENST00000614496 PRO2289Q9P1D8 64 aa5.14□□□□□ -1.59
MSH6-213ENST00000614496 SPRR2GQ9BYE4 73 aa5.12□□□□□ -1.59
MSH6-213ENST00000614496 KRTAP10-12P60413 245 aa5.11□□□□□ -1.59
MSH6-213ENST00000614496 MT1HP80294 61 aa5.1□□□□□ -1.59
MSH6-213ENST00000614496 KRTAP19-1Q8IUB9 90 aa5.09□□□□□ -1.59
MSH6-213ENST00000614496 MT2AP02795 61 aa5.08□□□□□ -1.6
MSH6-213ENST00000614496 MT1FP04733 61 aa5.08□□□□□ -1.6
MSH6-213ENST00000614496 KRTAP12-3P60328 96 aa5.08□□□□□ -1.6
MSH6-213ENST00000614496 MUC17Q685J3 4493 aa5.06□□□□□ -1.6
MSH6-213ENST00000614496 LCE2CQ5TA81 110 aa5.01□□□□□ -1.61
MSH6-213ENST00000614496 FLGP20930 4061 aaPredicted RBP5□□□□□ -1.61
MSH6-213ENST00000614496 FAT4Q6V0I7 4981 aa4.99□□□□□ -1.61
MSH6-213ENST00000614496 HERC1Q15751 4861 aa4.97□□□□□ -1.61
MSH6-213ENST00000614496 BIRC6Q9NR09 4857 aa4.92□□□□□ -1.62
MSH6-213ENST00000614496 RNF213Q63HN8 5207 aa4.9□□□□□ -1.62
MSH6-213ENST00000614496 SPRR5A0A1B0GTR4 108 aa4.9□□□□□ -1.62
MSH6-213ENST00000614496 KRTAP8-1Q8IUC2 63 aa4.9□□□□□ -1.63
MSH6-213ENST00000614496 INE1O15225 51 aa4.89□□□□□ -1.63
MSH6-213ENST00000614496 KRTAP9-8Q9BYQ0 159 aa4.86□□□□□ -1.63
MSH6-213ENST00000614496 PCLOQ9Y6V0 5065 aa4.85□□□□□ -1.63
MSH6-213ENST00000614496 KRTAP10-7P60409 375 aaPredicted RBP4.84□□□□□ -1.64
MSH6-213ENST00000614496 MT1XP80297 61 aa4.83□□□□□ -1.64
MSH6-213ENST00000614496 MT1BP07438 61 aa4.82□□□□□ -1.64
MSH6-213ENST00000614496 KRTAP10-5P60370 271 aa4.82□□□□□ -1.64
MSH6-213ENST00000614496 KRTAP19-8Q3LI54 63 aa4.82□□□□□ -1.64
MSH6-213ENST00000614496 HMCN2Q8NDA2 5059 aa4.79□□□□□ -1.64
MSH6-213ENST00000614496 UBR4Q5T4S7 5183 aa4.75□□□□□ -1.65
MSH6-213ENST00000614496 KRTAP19-5Q3LI72 72 aa4.75□□□□□ -1.65
MSH6-213ENST00000614496 KRTAP9-3Q9BYQ3 159 aa4.65□□□□□ -1.66
MSH6-213ENST00000614496 LCE3CQ5T5A8 94 aa4.64□□□□□ -1.67
MSH6-213ENST00000614496 KRTAP4-8A0A0G2JLE6 195 aa4.61□□□□□ -1.67
MSH6-213ENST00000614496 KRTAP4-8Q9BYQ9 185 aa4.61□□□□□ -1.67
MSH6-213ENST00000614496 CRCT1Q9UGL9 99 aa4.61□□□□□ -1.67
MSH6-213ENST00000614496 LCE2BO14633 110 aa4.52□□□□□ -1.69
MSH6-213ENST00000614496 KRTAP4-7Q9BYR0 210 aa4.47□□□□□ -1.69
MSH6-213ENST00000614496 USH2AO75445 5202 aa4.42□□□□□ -1.7
MSH6-213ENST00000614496 FSIP2Q5CZC0 6907 aa4.41□□□□□ -1.7
MSH6-213ENST00000614496 KMT2DO14686 5537 aa4.4□□□□□ -1.7
MSH6-213ENST00000614496 SYNE1Q8NF91 8797 aaKnown RBP4.31□□□□□ -1.72
MSH6-213ENST00000614496 KRTAP9-6A8MVA2 160 aa4.26□□□□□ -1.73
MSH6-213ENST00000614496 KRTAP19-7Q3SYF9 63 aa4.24□□□□□ -1.73
MSH6-213ENST00000614496 MT1LQ93083 61 aa4.24□□□□□ -1.73
MSH6-213ENST00000614496 MT1GP13640 62 aa4.23□□□□□ -1.73
MSH6-213ENST00000614496 MT1EP04732 61 aa4.2□□□□□ -1.74
MSH6-213ENST00000614496 LCE2AQ5TA79 106 aaPredicted RBP4.17□□□□□ -1.74
MSH6-213ENST00000614496 KRTAP4-3Q9BYR4 195 aa4.15□□□□□ -1.74
MSH6-213ENST00000614496 LOC100996750A0A140TA64 210 aa4.15□□□□□ -1.75
MSH6-213ENST00000614496 SPRR2FQ96RM1 72 aa4.14□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 55.7 ms