RNA–Protein interactions for RNA: ENST00000612273.1

COL6A1-207, Transcript of collagen type VI alpha 1 chain, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene COL6A1, Length 3,251 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1-207ENST00000612273 KRTAP10-8P60410 259 aa7.3□□□□□ -1.24
COL6A1-207ENST00000612273 K7ERS5 55 aa7.27□□□□□ -1.25
COL6A1-207ENST00000612273 Q5VSD8 79 aa7.27□□□□□ -1.25
COL6A1-207ENST00000612273 RYR2Q92736 4967 aa7.26□□□□□ -1.25
COL6A1-207ENST00000612273 KRTAP13-4Q3LI77 160 aa7.23□□□□□ -1.25
COL6A1-207ENST00000612273 KIAA1109Q2LD37 5005 aa7.22□□□□□ -1.25
COL6A1-207ENST00000612273 KRTAP25-1Q3LHN0 102 aa7.22□□□□□ -1.25
COL6A1-207ENST00000612273 LPAP08519 4548 aa7.19□□□□□ -1.26
COL6A1-207ENST00000612273 XP32Q5T750 250 aa7.19□□□□□ -1.26
COL6A1-207ENST00000612273 KRTAP3-3Q9BYR6 98 aa7.19□□□□□ -1.26
COL6A1-207ENST00000612273 P0C880 135 aa7.19□□□□□ -1.26
COL6A1-207ENST00000612273 KRTAP10-6P60371 365 aaPredicted RBP7.18□□□□□ -1.26
COL6A1-207ENST00000612273 S4R3F8 94 aa7.17□□□□□ -1.26
COL6A1-207ENST00000612273 RPL37P61927 97 aaKnown RBP7.16□□□□□ -1.26
COL6A1-207ENST00000612273 KRTAP17-1Q9BYP8 105 aa7.15□□□□□ -1.26
COL6A1-207ENST00000612273 LRP2P98164 4655 aa7.14□□□□□ -1.27
COL6A1-207ENST00000612273 TNXBP22105 4242 aa7.13□□□□□ -1.27
COL6A1-207ENST00000612273 RYR3Q15413 4870 aa7.13□□□□□ -1.27
COL6A1-207ENST00000612273 C10orf95Q9H7T3 257 aa7.11□□□□□ -1.27
COL6A1-207ENST00000612273 SPINT4Q6UDR6 99 aa7.1□□□□□ -1.27
COL6A1-207ENST00000612273 KRTAP3-2Q9BYR7 98 aa7.09□□□□□ -1.27
COL6A1-207ENST00000612273 ROMO1P60602 79 aa7.09□□□□□ -1.28
COL6A1-207ENST00000612273 RYR1P21817 5038 aa7.08□□□□□ -1.28
COL6A1-207ENST00000612273 KRTAP21-3Q3LHN1 58 aa7.01□□□□□ -1.29
COL6A1-207ENST00000612273 KRTAP12-2P59991 146 aa7□□□□□ -1.29
COL6A1-207ENST00000612273 TPRXLQ17RH7 258 aa6.99□□□□□ -1.29
COL6A1-207ENST00000612273 MT1HL1P0DM35 61 aa6.96□□□□□ -1.3
COL6A1-207ENST00000612273 ABCA13Q86UQ4 5058 aa6.95□□□□□ -1.3
COL6A1-207ENST00000612273 EPPK1P58107 5090 aaKnown RBP6.9□□□□□ -1.3
COL6A1-207ENST00000612273 KRTAP12-1P59990 96 aa6.86□□□□□ -1.31
COL6A1-207ENST00000612273 A0A0A0MQY5 61 aa6.85□□□□□ -1.31
COL6A1-207ENST00000612273 KRTAP4-5Q9BYR2 181 aa6.84□□□□□ -1.31
COL6A1-207ENST00000612273 M0QZ58 72 aa6.82□□□□□ -1.32
COL6A1-207ENST00000612273 R4GN34 69 aa6.77□□□□□ -1.33
COL6A1-207ENST00000612273 MUC2Q02817 5179 aa6.77□□□□□ -1.33
COL6A1-207ENST00000612273 LORP23490 312 aaPredicted RBP6.71□□□□□ -1.33
COL6A1-207ENST00000612273 NDUFAF8A1L188 74 aa6.68□□□□□ -1.34
COL6A1-207ENST00000612273 J3QL48 77 aa6.63□□□□□ -1.35
COL6A1-207ENST00000612273 KRTAP4-1Q9BYQ7 146 aa6.63□□□□□ -1.35
COL6A1-207ENST00000612273 SEC61BP60468 96 aaKnown RBP6.57□□□□□ -1.36
COL6A1-207ENST00000612273 HERC2O95714 4834 aa6.56□□□□□ -1.36
COL6A1-207ENST00000612273 KRTAP15-1Q3LI76 137 aa6.55□□□□□ -1.36
COL6A1-207ENST00000612273 CAMK2N1Q7Z7J9 78 aa6.51□□□□□ -1.37
COL6A1-207ENST00000612273 MUC17Q685J3 4493 aa6.48□□□□□ -1.37
COL6A1-207ENST00000612273 FAT4Q6V0I7 4981 aa6.42□□□□□ -1.38
COL6A1-207ENST00000612273 HERC1Q15751 4861 aa6.39□□□□□ -1.39
COL6A1-207ENST00000612273 PLAC4Q8WY50 150 aa6.35□□□□□ -1.39
COL6A1-207ENST00000612273 PCLOQ9Y6V0 5065 aa6.31□□□□□ -1.4
COL6A1-207ENST00000612273 KRTAP19-2Q3LHN2 52 aa6.28□□□□□ -1.4
COL6A1-207ENST00000612273 RNF213Q63HN8 5207 aa6.28□□□□□ -1.4
COL6A1-207ENST00000612273 M0R2T5 61 aa6.17□□□□□ -1.42
COL6A1-207ENST00000612273 FLGP20930 4061 aaPredicted RBP6.15□□□□□ -1.42
COL6A1-207ENST00000612273 LUZP6Q538Z0 58 aa6.13□□□□□ -1.43
COL6A1-207ENST00000612273 TNP1P09430 55 aa6.11□□□□□ -1.43
COL6A1-207ENST00000612273 BIRC6Q9NR09 4857 aa6.11□□□□□ -1.43
COL6A1-207ENST00000612273 UBR4Q5T4S7 5183 aa6.08□□□□□ -1.44
COL6A1-207ENST00000612273 PP632Q6XCG6 107 aa6.07□□□□□ -1.44
COL6A1-207ENST00000612273 HMCN2Q8NDA2 5059 aa6.06□□□□□ -1.44
COL6A1-207ENST00000612273 LCE2CQ5TA81 110 aa5.95□□□□□ -1.46
COL6A1-207ENST00000612273 KRTAP10-10P60014 251 aa5.94□□□□□ -1.46
COL6A1-207ENST00000612273 KRTAP19-1Q8IUB9 90 aa5.91□□□□□ -1.46
COL6A1-207ENST00000612273 LCE3AQ5TA76 89 aa5.84□□□□□ -1.47
COL6A1-207ENST00000612273 MT1HP80294 61 aa5.84□□□□□ -1.48
COL6A1-207ENST00000612273 MT1FP04733 61 aa5.83□□□□□ -1.48
COL6A1-207ENST00000612273 SPRR2GQ9BYE4 73 aa5.82□□□□□ -1.48
COL6A1-207ENST00000612273 MT2AP02795 61 aa5.78□□□□□ -1.48
COL6A1-207ENST00000612273 USH2AO75445 5202 aa5.69□□□□□ -1.5
COL6A1-207ENST00000612273 KRTAP9-8Q9BYQ0 159 aa5.68□□□□□ -1.5
COL6A1-207ENST00000612273 KRTAP23-1A1A580 65 aa5.65□□□□□ -1.5
COL6A1-207ENST00000612273 SPRR5A0A1B0GTR4 108 aa5.63□□□□□ -1.51
COL6A1-207ENST00000612273 KMT2DO14686 5537 aa5.6□□□□□ -1.51
COL6A1-207ENST00000612273 MT1BP07438 61 aa5.58□□□□□ -1.52
COL6A1-207ENST00000612273 KRTAP10-5P60370 271 aa5.57□□□□□ -1.52
COL6A1-207ENST00000612273 MT1XP80297 61 aa5.57□□□□□ -1.52
COL6A1-207ENST00000612273 KRTAP10-7P60409 375 aaPredicted RBP5.54□□□□□ -1.52
COL6A1-207ENST00000612273 KRTAP10-12P60413 245 aa5.53□□□□□ -1.52
COL6A1-207ENST00000612273 KRTAP12-3P60328 96 aa5.52□□□□□ -1.53
COL6A1-207ENST00000612273 KRTAP19-8Q3LI54 63 aa5.49□□□□□ -1.53
COL6A1-207ENST00000612273 KRTAP8-1Q8IUC2 63 aa5.49□□□□□ -1.53
COL6A1-207ENST00000612273 KRTAP9-3Q9BYQ3 159 aa5.41□□□□□ -1.54
COL6A1-207ENST00000612273 FSIP2Q5CZC0 6907 aa5.38□□□□□ -1.55
COL6A1-207ENST00000612273 PRO2289Q9P1D8 64 aa5.31□□□□□ -1.56
COL6A1-207ENST00000612273 KRTAP4-8A0A0G2JLE6 195 aa5.3□□□□□ -1.56
COL6A1-207ENST00000612273 KRTAP4-8Q9BYQ9 185 aa5.3□□□□□ -1.56
COL6A1-207ENST00000612273 KRTAP19-5Q3LI72 72 aa5.29□□□□□ -1.56
COL6A1-207ENST00000612273 LCE2BO14633 110 aa5.29□□□□□ -1.56
COL6A1-207ENST00000612273 KRTAP4-7Q9BYR0 210 aa5.15□□□□□ -1.58
COL6A1-207ENST00000612273 LCE3CQ5T5A8 94 aa5.13□□□□□ -1.59
COL6A1-207ENST00000612273 KRTAP9-6A8MVA2 160 aa5.06□□□□□ -1.6
COL6A1-207ENST00000612273 INE1O15225 51 aa5.02□□□□□ -1.61
COL6A1-207ENST00000612273 LCE2AQ5TA79 106 aaPredicted RBP4.96□□□□□ -1.61
COL6A1-207ENST00000612273 DSTQ03001 7570 aaKnown RBP4.95□□□□□ -1.62
COL6A1-207ENST00000612273 KRTAP19-7Q3SYF9 63 aa4.95□□□□□ -1.62
COL6A1-207ENST00000612273 SSPOA2VEC9 5147 aa4.94□□□□□ -1.62
COL6A1-207ENST00000612273 MUC12Q9UKN1 5478 aa4.91□□□□□ -1.62
COL6A1-207ENST00000612273 FCGBPQ9Y6R7 5405 aaPredicted RBP4.86□□□□□ -1.63
COL6A1-207ENST00000612273 CRCT1Q9UGL9 99 aa4.84□□□□□ -1.63
COL6A1-207ENST00000612273 MT1LQ93083 61 aa4.8□□□□□ -1.64
COL6A1-207ENST00000612273 KRTAP4-3Q9BYR4 195 aa4.8□□□□□ -1.64
COL6A1-207ENST00000612273 LOC100996750A0A140TA64 210 aa4.78□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms