RNA–Protein interactions for RNA: ENST00000611725.4

SNX13-213, Transcript of sorting nexin 13, humanhuman

TSL 1 (best) BASIC

Gene SNX13, Length 6,817 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX13-213ENST00000611725 KRTAP10-6P60371 365 aaPredicted RBP3.18□□□□□ -1.9
SNX13-213ENST00000611725 SACSQ9NZJ4 4579 aa3.17□□□□□ -1.9
SNX13-213ENST00000611725 APOBP04114 4563 aaKnown RBP3.16□□□□□ -1.9
SNX13-213ENST00000611725 M0R2T5 61 aa3.14□□□□□ -1.91
SNX13-213ENST00000611725 KRTAP13-4Q3LI77 160 aa3.13□□□□□ -1.91
SNX13-213ENST00000611725 KMT2CQ8NEZ4 4911 aaKnown RBP3.13□□□□□ -1.91
SNX13-213ENST00000611725 KRTAP3-3Q9BYR6 98 aa3.13□□□□□ -1.91
SNX13-213ENST00000611725 HERC2O95714 4834 aa3.13□□□□□ -1.91
SNX13-213ENST00000611725 DNAH3Q8TD57 4116 aa3.12□□□□□ -1.91
SNX13-213ENST00000611725 KRTAP3-2Q9BYR7 98 aa3.12□□□□□ -1.91
SNX13-213ENST00000611725 C10orf95Q9H7T3 257 aa3.12□□□□□ -1.91
SNX13-213ENST00000611725 H3BS24 57 aa3.12□□□□□ -1.91
SNX13-213ENST00000611725 ABCA13Q86UQ4 5058 aa3.11□□□□□ -1.91
SNX13-213ENST00000611725 DYNC2H1Q8NCM8 4307 aaKnown RBP3.08□□□□□ -1.92
SNX13-213ENST00000611725 LRP1Q07954 4544 aaKnown RBP3.08□□□□□ -1.92
SNX13-213ENST00000611725 KRTAP4-5Q9BYR2 181 aa3.07□□□□□ -1.92
SNX13-213ENST00000611725 KRTAP12-2P59991 146 aa3.07□□□□□ -1.92
SNX13-213ENST00000611725 KRTAP12-1P59990 96 aa3.07□□□□□ -1.92
SNX13-213ENST00000611725 PCLOQ9Y6V0 5065 aa3.06□□□□□ -1.92
SNX13-213ENST00000611725 ALMS1Q8TCU4 4167 aa3.06□□□□□ -1.92
SNX13-213ENST00000611725 KRTAP17-1Q9BYP8 105 aa3.05□□□□□ -1.92
SNX13-213ENST00000611725 LYSTQ99698 3801 aa3.05□□□□□ -1.92
SNX13-213ENST00000611725 EPPK1P58107 5090 aaKnown RBP3.04□□□□□ -1.92
SNX13-213ENST00000611725 BIRC6Q9NR09 4857 aa3.03□□□□□ -1.92
SNX13-213ENST00000611725 LUZP6Q538Z0 58 aa3.03□□□□□ -1.92
SNX13-213ENST00000611725 KMT2AQ03164 3969 aa3.02□□□□□ -1.93
SNX13-213ENST00000611725 PLAC4Q8WY50 150 aa3□□□□□ -1.93
SNX13-213ENST00000611725 FAT3Q8TDW7 4589 aa3□□□□□ -1.93
SNX13-213ENST00000611725 LRP2P98164 4655 aa2.99□□□□□ -1.93
SNX13-213ENST00000611725 NDUFAF8A1L188 74 aa2.99□□□□□ -1.93
SNX13-213ENST00000611725 TNP1P09430 55 aa2.98□□□□□ -1.93
SNX13-213ENST00000611725 PP632Q6XCG6 107 aa2.97□□□□□ -1.93
SNX13-213ENST00000611725 UBR4Q5T4S7 5183 aa2.97□□□□□ -1.93
SNX13-213ENST00000611725 DNAH6Q9C0G6 4158 aa2.95□□□□□ -1.94
SNX13-213ENST00000611725 RNF213Q63HN8 5207 aa2.95□□□□□ -1.94
SNX13-213ENST00000611725 FAT2Q9NYQ8 4349 aa2.94□□□□□ -1.94
SNX13-213ENST00000611725 VPS13BQ7Z7G8 4022 aa2.92□□□□□ -1.94
SNX13-213ENST00000611725 DNAH7Q8WXX0 4024 aa2.92□□□□□ -1.94
SNX13-213ENST00000611725 HERC1Q15751 4861 aa2.92□□□□□ -1.94
SNX13-213ENST00000611725 CMYA5Q8N3K9 4069 aa2.91□□□□□ -1.94
SNX13-213ENST00000611725 HECTD4Q9Y4D8 3996 aa2.91□□□□□ -1.94
SNX13-213ENST00000611725 PKHD1P08F94 4074 aa2.91□□□□□ -1.94
SNX13-213ENST00000611725 KRTAP4-1Q9BYQ7 146 aa2.9□□□□□ -1.94
SNX13-213ENST00000611725 KRTAP10-10P60014 251 aa2.9□□□□□ -1.94
SNX13-213ENST00000611725 LORP23490 312 aaPredicted RBP2.9□□□□□ -1.95
SNX13-213ENST00000611725 KRTAP15-1Q3LI76 137 aa2.87□□□□□ -1.95
SNX13-213ENST00000611725 A0A0A0MQY5 61 aa2.86□□□□□ -1.95
SNX13-213ENST00000611725 PKD1P98161 4303 aa2.85□□□□□ -1.95
SNX13-213ENST00000611725 HMCN2Q8NDA2 5059 aa2.85□□□□□ -1.95
SNX13-213ENST00000611725 FAT4Q6V0I7 4981 aa2.8□□□□□ -1.96
SNX13-213ENST00000611725 FRAS1Q86XX4 4008 aa2.79□□□□□ -1.96
SNX13-213ENST00000611725 HSPG2P98160 4391 aa2.78□□□□□ -1.96
SNX13-213ENST00000611725 MUC2Q02817 5179 aa2.77□□□□□ -1.97
SNX13-213ENST00000611725 MUC17Q685J3 4493 aa2.77□□□□□ -1.97
SNX13-213ENST00000611725 KRTAP23-1A1A580 65 aa2.73□□□□□ -1.97
SNX13-213ENST00000611725 PRO2289Q9P1D8 64 aa2.73□□□□□ -1.97
SNX13-213ENST00000611725 KRTAP19-2Q3LHN2 52 aa2.7□□□□□ -1.98
SNX13-213ENST00000611725 MT2AP02795 61 aa2.68□□□□□ -1.98
SNX13-213ENST00000611725 SPRR2GQ9BYE4 73 aa2.68□□□□□ -1.98
SNX13-213ENST00000611725 MT1HP80294 61 aa2.68□□□□□ -1.98
SNX13-213ENST00000611725 KRTAP19-1Q8IUB9 90 aa2.66□□□□□ -1.98
SNX13-213ENST00000611725 MT1FP04733 61 aa2.65□□□□□ -1.98
SNX13-213ENST00000611725 LCE2CQ5TA81 110 aa2.64□□□□□ -1.99
SNX13-213ENST00000611725 LPAP08519 4548 aa2.64□□□□□ -1.99
SNX13-213ENST00000611725 PKHD1L1Q86WI1 4243 aa2.63□□□□□ -1.99
SNX13-213ENST00000611725 FSIP2Q5CZC0 6907 aa2.63□□□□□ -1.99
SNX13-213ENST00000611725 KRTAP10-12P60413 245 aa2.62□□□□□ -1.99
SNX13-213ENST00000611725 LCE3AQ5TA76 89 aa2.62□□□□□ -1.99
SNX13-213ENST00000611725 LCE2DQ5TA82 110 aaPredicted RBP2.61□□□□□ -1.99
SNX13-213ENST00000611725 SPRR5A0A1B0GTR4 108 aa2.6□□□□□ -1.99
SNX13-213ENST00000611725 TNXBP22105 4242 aa2.59□□□□□ -1.99
SNX13-213ENST00000611725 KRTAP12-3P60328 96 aa2.59□□□□□ -1.99
SNX13-213ENST00000611725 KRTAP8-1Q8IUC2 63 aa2.59□□□□□ -2
SNX13-213ENST00000611725 KRTAP19-8Q3LI54 63 aa2.56□□□□□ -2
SNX13-213ENST00000611725 KRTAP9-8Q9BYQ0 159 aa2.55□□□□□ -2
SNX13-213ENST00000611725 SYNE1Q8NF91 8797 aaKnown RBP2.53□□□□□ -2
SNX13-213ENST00000611725 USH2AO75445 5202 aa2.52□□□□□ -2.01
SNX13-213ENST00000611725 MT1BP07438 61 aa2.52□□□□□ -2.01
SNX13-213ENST00000611725 FLGP20930 4061 aaPredicted RBP2.49□□□□□ -2.01
SNX13-213ENST00000611725 MT1XP80297 61 aa2.48□□□□□ -2.01
SNX13-213ENST00000611725 KRTAP10-5P60370 271 aa2.46□□□□□ -2.01
SNX13-213ENST00000611725 KRTAP9-3Q9BYQ3 159 aa2.46□□□□□ -2.02
SNX13-213ENST00000611725 OBSCNQ5VST9 7968 aa2.45□□□□□ -2.02
SNX13-213ENST00000611725 KRTAP10-7P60409 375 aaPredicted RBP2.43□□□□□ -2.02
SNX13-213ENST00000611725 INE1O15225 51 aa2.4□□□□□ -2.02
SNX13-213ENST00000611725 SSPOA2VEC9 5147 aa2.4□□□□□ -2.03
SNX13-213ENST00000611725 KRTAP19-5Q3LI72 72 aa2.39□□□□□ -2.03
SNX13-213ENST00000611725 LCE2BO14633 110 aa2.38□□□□□ -2.03
SNX13-213ENST00000611725 LCE3CQ5T5A8 94 aa2.33□□□□□ -2.04
SNX13-213ENST00000611725 FCGBPQ9Y6R7 5405 aaPredicted RBP2.33□□□□□ -2.04
SNX13-213ENST00000611725 KRTAP4-8A0A0G2JLE6 195 aa2.33□□□□□ -2.04
SNX13-213ENST00000611725 KRTAP4-8Q9BYQ9 185 aa2.33□□□□□ -2.04
SNX13-213ENST00000611725 KRTAP19-4Q3LI73 84 aa2.32□□□□□ -2.04
SNX13-213ENST00000611725 LCE2AQ5TA79 106 aaPredicted RBP2.32□□□□□ -2.04
SNX13-213ENST00000611725 DSTQ03001 7570 aaKnown RBP2.31□□□□□ -2.04
SNX13-213ENST00000611725 CRCT1Q9UGL9 99 aa2.27□□□□□ -2.05
SNX13-213ENST00000611725 KMT2DO14686 5537 aa2.27□□□□□ -2.05
SNX13-213ENST00000611725 MUC12Q9UKN1 5478 aa2.22□□□□□ -2.05
SNX13-213ENST00000611725 KRTAP19-7Q3SYF9 63 aa2.21□□□□□ -2.06
SNX13-213ENST00000611725 KRTAP4-7Q9BYR0 210 aa2.2□□□□□ -2.06
Retrieved 100 of 20,778 RNA–protein pairs in 87.5 ms