RNA–Protein interactions for RNA: ENST00000610726.4

CSDE1-218, Transcript of cold shock domain containing E1, humanhuman

TSL 5 BASIC

Gene CSDE1, Length 4,312 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSDE1-218ENST00000610726 DNAH17Q9UFH2 4485 aa3.5□□□□□ -1.85
CSDE1-218ENST00000610726 RYR1P21817 5038 aa3.5□□□□□ -1.85
CSDE1-218ENST00000610726 KMT2AQ03164 3969 aa3.5□□□□□ -1.85
CSDE1-218ENST00000610726 KIAA1109Q2LD37 5005 aa3.48□□□□□ -1.85
CSDE1-218ENST00000610726 KRTAP12-2P59991 146 aa3.48□□□□□ -1.85
CSDE1-218ENST00000610726 LYSTQ99698 3801 aa3.48□□□□□ -1.85
CSDE1-218ENST00000610726 DNAH2Q9P225 4427 aa3.47□□□□□ -1.85
CSDE1-218ENST00000610726 KRTAP10-6P60371 365 aaPredicted RBP3.46□□□□□ -1.86
CSDE1-218ENST00000610726 KRTAP13-4Q3LI77 160 aa3.45□□□□□ -1.86
CSDE1-218ENST00000610726 DNAH8Q96JB1 4490 aa3.45□□□□□ -1.86
CSDE1-218ENST00000610726 H3BS24 57 aa3.44□□□□□ -1.86
CSDE1-218ENST00000610726 KRTAP12-1P59990 96 aa3.43□□□□□ -1.86
CSDE1-218ENST00000610726 PP632Q6XCG6 107 aa3.43□□□□□ -1.86
CSDE1-218ENST00000610726 DNAH3Q8TD57 4116 aa3.42□□□□□ -1.86
CSDE1-218ENST00000610726 KRTAP3-3Q9BYR6 98 aa3.42□□□□□ -1.86
CSDE1-218ENST00000610726 NDUFAF8A1L188 74 aa3.41□□□□□ -1.86
CSDE1-218ENST00000610726 RYR3Q15413 4870 aa3.41□□□□□ -1.86
CSDE1-218ENST00000610726 A0A0A0MQY5 61 aa3.41□□□□□ -1.86
CSDE1-218ENST00000610726 MYCBP2O75592 4640 aa3.4□□□□□ -1.87
CSDE1-218ENST00000610726 SACSQ9NZJ4 4579 aa3.4□□□□□ -1.87
CSDE1-218ENST00000610726 PRO2289Q9P1D8 64 aa3.4□□□□□ -1.87
CSDE1-218ENST00000610726 DYNC2H1Q8NCM8 4307 aaKnown RBP3.38□□□□□ -1.87
CSDE1-218ENST00000610726 KRTAP3-2Q9BYR7 98 aa3.37□□□□□ -1.87
CSDE1-218ENST00000610726 FAT2Q9NYQ8 4349 aa3.37□□□□□ -1.87
CSDE1-218ENST00000610726 VPS13BQ7Z7G8 4022 aa3.37□□□□□ -1.87
CSDE1-218ENST00000610726 APOBP04114 4563 aaKnown RBP3.33□□□□□ -1.88
CSDE1-218ENST00000610726 LRP1Q07954 4544 aaKnown RBP3.32□□□□□ -1.88
CSDE1-218ENST00000610726 HYDINQ4G0P3 5121 aa3.32□□□□□ -1.88
CSDE1-218ENST00000610726 DNAH6Q9C0G6 4158 aa3.32□□□□□ -1.88
CSDE1-218ENST00000610726 DNAH7Q8WXX0 4024 aa3.31□□□□□ -1.88
CSDE1-218ENST00000610726 FAT3Q8TDW7 4589 aa3.31□□□□□ -1.88
CSDE1-218ENST00000610726 LCE2DQ5TA82 110 aaPredicted RBP3.3□□□□□ -1.88
CSDE1-218ENST00000610726 RYR2Q92736 4967 aa3.29□□□□□ -1.88
CSDE1-218ENST00000610726 KRTAP17-1Q9BYP8 105 aa3.29□□□□□ -1.88
CSDE1-218ENST00000610726 KRTAP4-1Q9BYQ7 146 aa3.28□□□□□ -1.88
CSDE1-218ENST00000610726 FRAS1Q86XX4 4008 aa3.28□□□□□ -1.88
CSDE1-218ENST00000610726 KMT2CQ8NEZ4 4911 aaKnown RBP3.26□□□□□ -1.89
CSDE1-218ENST00000610726 LORP23490 312 aaPredicted RBP3.26□□□□□ -1.89
CSDE1-218ENST00000610726 HECTD4Q9Y4D8 3996 aa3.25□□□□□ -1.89
CSDE1-218ENST00000610726 HERC2O95714 4834 aa3.25□□□□□ -1.89
CSDE1-218ENST00000610726 PKHD1P08F94 4074 aa3.24□□□□□ -1.89
CSDE1-218ENST00000610726 LRP2P98164 4655 aa3.18□□□□□ -1.9
CSDE1-218ENST00000610726 HSPG2P98160 4391 aa3.13□□□□□ -1.91
CSDE1-218ENST00000610726 BIRC6Q9NR09 4857 aa3.13□□□□□ -1.91
CSDE1-218ENST00000610726 MT1HP80294 61 aa3.12□□□□□ -1.91
CSDE1-218ENST00000610726 EPPK1P58107 5090 aaKnown RBP3.12□□□□□ -1.91
CSDE1-218ENST00000610726 KRTAP15-1Q3LI76 137 aa3.11□□□□□ -1.91
CSDE1-218ENST00000610726 KRTAP10-12P60413 245 aa3.1□□□□□ -1.91
CSDE1-218ENST00000610726 PKD1P98161 4303 aa3.08□□□□□ -1.92
CSDE1-218ENST00000610726 PCLOQ9Y6V0 5065 aa3.07□□□□□ -1.92
CSDE1-218ENST00000610726 MT2AP02795 61 aa3.07□□□□□ -1.92
CSDE1-218ENST00000610726 LCE3AQ5TA76 89 aa3.03□□□□□ -1.92
CSDE1-218ENST00000610726 MT1FP04733 61 aa3.03□□□□□ -1.92
CSDE1-218ENST00000610726 ABCA13Q86UQ4 5058 aa3.03□□□□□ -1.92
CSDE1-218ENST00000610726 KRTAP12-3P60328 96 aa3.02□□□□□ -1.93
CSDE1-218ENST00000610726 LPAP08519 4548 aa3.02□□□□□ -1.93
CSDE1-218ENST00000610726 HERC1Q15751 4861 aa3.01□□□□□ -1.93
CSDE1-218ENST00000610726 SPRR2GQ9BYE4 73 aa3□□□□□ -1.93
CSDE1-218ENST00000610726 CRCT1Q9UGL9 99 aa2.95□□□□□ -1.94
CSDE1-218ENST00000610726 KRTAP23-1A1A580 65 aa2.94□□□□□ -1.94
CSDE1-218ENST00000610726 TNXBP22105 4242 aa2.91□□□□□ -1.94
CSDE1-218ENST00000610726 KRTAP19-1Q8IUB9 90 aa2.91□□□□□ -1.94
CSDE1-218ENST00000610726 KRTAP8-1Q8IUC2 63 aa2.9□□□□□ -1.95
CSDE1-218ENST00000610726 LCE2CQ5TA81 110 aa2.89□□□□□ -1.95
CSDE1-218ENST00000610726 PKHD1L1Q86WI1 4243 aa2.89□□□□□ -1.95
CSDE1-218ENST00000610726 RNF213Q63HN8 5207 aa2.86□□□□□ -1.95
CSDE1-218ENST00000610726 KRTAP9-8Q9BYQ0 159 aa2.85□□□□□ -1.95
CSDE1-218ENST00000610726 UBR4Q5T4S7 5183 aa2.85□□□□□ -1.95
CSDE1-218ENST00000610726 FSIP2Q5CZC0 6907 aa2.83□□□□□ -1.96
CSDE1-218ENST00000610726 KRTAP19-8Q3LI54 63 aa2.82□□□□□ -1.96
CSDE1-218ENST00000610726 KRTAP19-2Q3LHN2 52 aa2.82□□□□□ -1.96
CSDE1-218ENST00000610726 MUC17Q685J3 4493 aa2.81□□□□□ -1.96
CSDE1-218ENST00000610726 MUC2Q02817 5179 aa2.81□□□□□ -1.96
CSDE1-218ENST00000610726 MT1BP07438 61 aa2.79□□□□□ -1.96
CSDE1-218ENST00000610726 FAT4Q6V0I7 4981 aa2.79□□□□□ -1.96
CSDE1-218ENST00000610726 KRTAP10-7P60409 375 aaPredicted RBP2.79□□□□□ -1.96
CSDE1-218ENST00000610726 LOC100996750A0A140TA64 210 aa2.78□□□□□ -1.96
CSDE1-218ENST00000610726 KRTAP19-5Q3LI72 72 aa2.78□□□□□ -1.96
CSDE1-218ENST00000610726 KRTAP4-6Q9BYQ5 205 aa2.78□□□□□ -1.96
CSDE1-218ENST00000610726 FLGP20930 4061 aaPredicted RBP2.77□□□□□ -1.97
CSDE1-218ENST00000610726 MT1XP80297 61 aa2.77□□□□□ -1.97
CSDE1-218ENST00000610726 KRTAP9-3Q9BYQ3 159 aa2.76□□□□□ -1.97
CSDE1-218ENST00000610726 SPRR2FQ96RM1 72 aa2.75□□□□□ -1.97
CSDE1-218ENST00000610726 HMCN2Q8NDA2 5059 aa2.75□□□□□ -1.97
CSDE1-218ENST00000610726 KRTAP10-5P60370 271 aa2.74□□□□□ -1.97
CSDE1-218ENST00000610726 KRTAP4-8A0A0G2JLE6 195 aa2.69□□□□□ -1.98
CSDE1-218ENST00000610726 KRTAP4-8Q9BYQ9 185 aa2.69□□□□□ -1.98
CSDE1-218ENST00000610726 LCE2BO14633 110 aa2.69□□□□□ -1.98
CSDE1-218ENST00000610726 INE1O15225 51 aa2.66□□□□□ -1.98
CSDE1-218ENST00000610726 LCE3CQ5T5A8 94 aa2.66□□□□□ -1.98
CSDE1-218ENST00000610726 LCE2AQ5TA79 106 aaPredicted RBP2.59□□□□□ -2
CSDE1-218ENST00000610726 SYNE1Q8NF91 8797 aaKnown RBP2.57□□□□□ -2
CSDE1-218ENST00000610726 SPRR2EP22531 72 aa2.55□□□□□ -2
CSDE1-218ENST00000610726 SPRR2BP35325 72 aa2.55□□□□□ -2
CSDE1-218ENST00000610726 SPRR2AP35326 72 aa2.55□□□□□ -2
CSDE1-218ENST00000610726 KRTAP19-4Q3LI73 84 aa2.53□□□□□ -2
CSDE1-218ENST00000610726 MT1GP13640 62 aa2.52□□□□□ -2.01
CSDE1-218ENST00000610726 KRTAP4-7Q9BYR0 210 aa2.51□□□□□ -2.01
CSDE1-218ENST00000610726 KRTAP9-2Q9BYQ4 174 aa2.48□□□□□ -2.01
CSDE1-218ENST00000610726 KRTAP19-6Q3LI70 58 aa2.48□□□□□ -2.01
Retrieved 100 of 20,778 RNA–protein pairs in 83.3 ms