RNA–Protein interactions for RNA: ENST00000602239.1

SHKBP1-228, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 450 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-228ENST00000602239 COL5A1-AS1Q5SY13 56 aa6.77□□□□□ -1.33
SHKBP1-228ENST00000602239 TRAV22A0A0B4J277 110 aa6.72□□□□□ -1.33
SHKBP1-228ENST00000602239 LOC101927531A0A1B0GV80 90 aa6.7□□□□□ -1.34
SHKBP1-228ENST00000602239 ETDBQ3ZM63 59 aa6.7□□□□□ -1.34
SHKBP1-228ENST00000602239 H0YAA0 97 aa6.68□□□□□ -1.34
SHKBP1-228ENST00000602239 NDUFC1O43677 76 aa6.67□□□□□ -1.34
SHKBP1-228ENST00000602239 F8W1H4 67 aa6.66□□□□□ -1.34
SHKBP1-228ENST00000602239 KRTAP2-3P0C7H8 128 aa6.66□□□□□ -1.34
SHKBP1-228ENST00000602239 KRTAP2-4Q9BYR9 128 aa6.66□□□□□ -1.34
SHKBP1-228ENST00000602239 GTF2H5Q6ZYL4 71 aa6.64□□□□□ -1.35
SHKBP1-228ENST00000602239 ADM2Q7Z4H4 148 aa6.64□□□□□ -1.35
SHKBP1-228ENST00000602239 SPRR2FQ96RM1 72 aa6.64□□□□□ -1.35
SHKBP1-228ENST00000602239 MT1XP80297 61 aa6.63□□□□□ -1.35
SHKBP1-228ENST00000602239 H0Y9P7 68 aa6.6□□□□□ -1.35
SHKBP1-228ENST00000602239 SPRR2EP22531 72 aa6.6□□□□□ -1.35
SHKBP1-228ENST00000602239 SPRR2BP35325 72 aa6.6□□□□□ -1.35
SHKBP1-228ENST00000602239 SPRR2AP35326 72 aa6.6□□□□□ -1.35
SHKBP1-228ENST00000602239 A8MUN3 132 aa6.59□□□□□ -1.35
SHKBP1-228ENST00000602239 UQCRQO14949 82 aa6.59□□□□□ -1.35
SHKBP1-228ENST00000602239 PRO2289Q9P1D8 64 aa6.58□□□□□ -1.36
SHKBP1-228ENST00000602239 ACYP1P07311 99 aa6.57□□□□□ -1.36
SHKBP1-228ENST00000602239 ATOX1O00244 68 aa6.55□□□□□ -1.36
SHKBP1-228ENST00000602239 HIST1H4AP62805 103 aaKnown RBP6.55□□□□□ -1.36
SHKBP1-228ENST00000602239 KRTAP8-1Q8IUC2 63 aa6.53□□□□□ -1.36
SHKBP1-228ENST00000602239 PLAC4Q8WY50 150 aa6.53□□□□□ -1.36
SHKBP1-228ENST00000602239 LCE1AQ5T7P2 110 aa6.5□□□□□ -1.37
SHKBP1-228ENST00000602239 ATP5EP2Q5VTU8 51 aa6.5□□□□□ -1.37
SHKBP1-228ENST00000602239 LINC00208Q96KT6 92 aa6.49□□□□□ -1.37
SHKBP1-228ENST00000602239 P0C880 135 aa6.48□□□□□ -1.37
SHKBP1-228ENST00000602239 KRTAP12-2P59991 146 aa6.47□□□□□ -1.37
SHKBP1-228ENST00000602239 KRTAP4-8A0A0G2JLE6 195 aa6.46□□□□□ -1.38
SHKBP1-228ENST00000602239 FAM240AA0A1B0GVK7 77 aa6.46□□□□□ -1.38
SHKBP1-228ENST00000602239 KRTAP4-8Q9BYQ9 185 aa6.46□□□□□ -1.38
SHKBP1-228ENST00000602239 R4GN34 69 aa6.46□□□□□ -1.38
SHKBP1-228ENST00000602239 PCP4L1A6NKN8 68 aa6.45□□□□□ -1.38
SHKBP1-228ENST00000602239 KRTAP2-2Q9BYT5 123 aa6.43□□□□□ -1.38
SHKBP1-228ENST00000602239 KRTAP2-1Q9BYU5 128 aa6.43□□□□□ -1.38
SHKBP1-228ENST00000602239 M0QZ58 72 aa6.41□□□□□ -1.38
SHKBP1-228ENST00000602239 KRTAP3-2Q9BYR7 98 aa6.39□□□□□ -1.39
SHKBP1-228ENST00000602239 OCR1Q9BZK8 76 aa6.39□□□□□ -1.39
SHKBP1-228ENST00000602239 SPRR2DP22532 72 aa6.37□□□□□ -1.39
SHKBP1-228ENST00000602239 MP68P56378 58 aa6.37□□□□□ -1.39
SHKBP1-228ENST00000602239 LINC01554Q52M75 96 aa6.36□□□□□ -1.39
SHKBP1-228ENST00000602239 LINC00643Q86TS7 51 aa6.36□□□□□ -1.39
SHKBP1-228ENST00000602239 C20orf197Q8N268 126 aa6.36□□□□□ -1.39
SHKBP1-228ENST00000602239 KRTAP10-7P60409 375 aaPredicted RBP6.34□□□□□ -1.39
SHKBP1-228ENST00000602239 DMAC1Q96GE9 116 aa6.3□□□□□ -1.4
SHKBP1-228ENST00000602239 KRTAP10-12P60413 245 aa6.27□□□□□ -1.41
SHKBP1-228ENST00000602239 H3BPC8 53 aa6.23□□□□□ -1.41
SHKBP1-228ENST00000602239 LCE3BQ5TA77 95 aa6.23□□□□□ -1.41
SHKBP1-228ENST00000602239 TRAV7A0A075B6U4 112 aa6.14□□□□□ -1.43
SHKBP1-228ENST00000602239 MT-ATP8P03928 68 aa6.13□□□□□ -1.43
SHKBP1-228ENST00000602239 SCGB1A1P11684 91 aa6.13□□□□□ -1.43
SHKBP1-228ENST00000602239 ACYP2P14621 99 aa6.1□□□□□ -1.43
SHKBP1-228ENST00000602239 A0A1B0GV90 55 aa6.07□□□□□ -1.44
SHKBP1-228ENST00000602239 SPTSSBQ8NFR3 76 aa6.02□□□□□ -1.45
SHKBP1-228ENST00000602239 GPR98Q8WXG9 6306 aa6.01□□□□□ -1.45
SHKBP1-228ENST00000602239 J3QR89 54 aa5.97□□□□□ -1.45
SHKBP1-228ENST00000602239 KRTAP13-4Q3LI77 160 aa5.97□□□□□ -1.45
SHKBP1-228ENST00000602239 CHKB-CPT1BH3BT56 60 aa5.96□□□□□ -1.46
SHKBP1-228ENST00000602239 KRTAP19-7Q3SYF9 63 aa5.93□□□□□ -1.46
SHKBP1-228ENST00000602239 LCE5AQ5TCM9 118 aa5.93□□□□□ -1.46
SHKBP1-228ENST00000602239 DSTQ03001 7570 aaKnown RBP5.91□□□□□ -1.46
SHKBP1-228ENST00000602239 CAMK2N1Q7Z7J9 78 aa5.9□□□□□ -1.46
SHKBP1-228ENST00000602239 KRTAP4-9Q9BYQ8 210 aa5.9□□□□□ -1.46
SHKBP1-228ENST00000602239 MT1EP04732 61 aa5.88□□□□□ -1.47
SHKBP1-228ENST00000602239 KRTAP19-3Q7Z4W3 81 aa5.87□□□□□ -1.47
SHKBP1-228ENST00000602239 SNURFQ9Y675 71 aa5.87□□□□□ -1.47
SHKBP1-228ENST00000602239 SMIM20Q8N5G0 67 aa5.85□□□□□ -1.47
SHKBP1-228ENST00000602239 SPANXA2-OT1Q8N9U9 137 aa5.77□□□□□ -1.49
SHKBP1-228ENST00000602239 A0A0D9SG42 100 aa5.74□□□□□ -1.49
SHKBP1-228ENST00000602239 CYSTM1Q9H1C7 97 aa5.73□□□□□ -1.49
SHKBP1-228ENST00000602239 KRTAP19-5Q3LI72 72 aa5.72□□□□□ -1.49
SHKBP1-228ENST00000602239 LCE1DQ5T752 114 aa5.71□□□□□ -1.5
SHKBP1-228ENST00000602239 MT1GP13640 62 aa5.69□□□□□ -1.5
SHKBP1-228ENST00000602239 SPATA8Q6RVD6 105 aa5.69□□□□□ -1.5
SHKBP1-228ENST00000602239 K7ERU9 68 aa5.68□□□□□ -1.5
SHKBP1-228ENST00000602239 SPINT4Q6UDR6 99 aa5.65□□□□□ -1.5
SHKBP1-228ENST00000602239 COA5Q86WW8 74 aa5.65□□□□□ -1.5
SHKBP1-228ENST00000602239 MT4P47944 62 aa5.62□□□□□ -1.51
SHKBP1-228ENST00000602239 KRTAP12-1P59990 96 aa5.62□□□□□ -1.51
SHKBP1-228ENST00000602239 SERP2Q8N6R1 65 aa5.62□□□□□ -1.51
SHKBP1-228ENST00000602239 SERP1Q9Y6X1 66 aa5.62□□□□□ -1.51
SHKBP1-228ENST00000602239 SEC61GP60059 68 aa5.61□□□□□ -1.51
SHKBP1-228ENST00000602239 PP632Q6XCG6 107 aa5.61□□□□□ -1.51
SHKBP1-228ENST00000602239 MT1MQ8N339 61 aa5.61□□□□□ -1.51
SHKBP1-228ENST00000602239 HMCN1Q96RW7 5635 aa5.6□□□□□ -1.51
SHKBP1-228ENST00000602239 LCE4AQ5TA78 99 aa5.6□□□□□ -1.51
SHKBP1-228ENST00000602239 A0A1B0GU33 70 aa5.59□□□□□ -1.51
SHKBP1-228ENST00000602239 MT1LQ93083 61 aa5.59□□□□□ -1.51
SHKBP1-228ENST00000602239 KRTAP4-3Q9BYR4 195 aa5.55□□□□□ -1.52
SHKBP1-228ENST00000602239 KRTAP5-4Q6L8H1 288 aa5.49□□□□□ -1.53
SHKBP1-228ENST00000602239 AHNAK2Q8IVF2 5795 aa5.48□□□□□ -1.53
SHKBP1-228ENST00000602239 C10orf95Q9H7T3 257 aa5.48□□□□□ -1.53
SHKBP1-228ENST00000602239 LCE3AQ5TA76 89 aa5.47□□□□□ -1.53
SHKBP1-228ENST00000602239 KRTAP4-6Q9BYQ5 205 aa5.46□□□□□ -1.54
SHKBP1-228ENST00000602239 A8MU10 97 aa5.43□□□□□ -1.54
SHKBP1-228ENST00000602239 KRTAP5-10Q6L8G5 202 aa5.41□□□□□ -1.54
SHKBP1-228ENST00000602239 SMIM26A0A096LP01 95 aa5.39□□□□□ -1.55
SHKBP1-228ENST00000602239 H7BZZ5 65 aa5.38□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 88 ms