RNA–Protein interactions for RNA: ENST00000600689.1

UPF1-210, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,084 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-210ENST00000600689 RYR3Q15413 4870 aa9.7□□□□□ -0.86
UPF1-210ENST00000600689 C20orf166-AS1Q96NR2 134 aa9.69□□□□□ -0.86
UPF1-210ENST00000600689 LRP1Q07954 4544 aaKnown RBP9.69□□□□□ -0.86
UPF1-210ENST00000600689 RPS29P62273 56 aaKnown RBP9.64□□□□□ -0.87
UPF1-210ENST00000600689 HSPG2P98160 4391 aa9.61□□□□□ -0.87
UPF1-210ENST00000600689 TNXBP22105 4242 aa9.57□□□□□ -0.88
UPF1-210ENST00000600689 KRTAP13-4Q3LI77 160 aa9.56□□□□□ -0.88
UPF1-210ENST00000600689 C10orf95Q9H7T3 257 aa9.56□□□□□ -0.88
UPF1-210ENST00000600689 SPINT4Q6UDR6 99 aa9.53□□□□□ -0.88
UPF1-210ENST00000600689 P0C880 135 aa9.52□□□□□ -0.88
UPF1-210ENST00000600689 RPL37P61927 97 aaKnown RBP9.51□□□□□ -0.89
UPF1-210ENST00000600689 FAT3Q8TDW7 4589 aa9.49□□□□□ -0.89
UPF1-210ENST00000600689 RYR1P21817 5038 aa9.47□□□□□ -0.89
UPF1-210ENST00000600689 KRTAP17-1Q9BYP8 105 aa9.47□□□□□ -0.89
UPF1-210ENST00000600689 KRTAP10-6P60371 365 aaPredicted RBP9.47□□□□□ -0.89
UPF1-210ENST00000600689 Q5VSD8 79 aa9.47□□□□□ -0.89
UPF1-210ENST00000600689 KIAA1109Q2LD37 5005 aa9.46□□□□□ -0.89
UPF1-210ENST00000600689 MYCBP2O75592 4640 aa9.46□□□□□ -0.9
UPF1-210ENST00000600689 TPRXLQ17RH7 258 aa9.45□□□□□ -0.9
UPF1-210ENST00000600689 A0A0A0MQY5 61 aa9.45□□□□□ -0.9
UPF1-210ENST00000600689 KRTAP10-8P60410 259 aa9.41□□□□□ -0.9
UPF1-210ENST00000600689 KRTAP3-3Q9BYR6 98 aa9.41□□□□□ -0.9
UPF1-210ENST00000600689 EPPK1P58107 5090 aaKnown RBP9.37□□□□□ -0.91
UPF1-210ENST00000600689 KRTAP3-2Q9BYR7 98 aa9.34□□□□□ -0.91
UPF1-210ENST00000600689 S4R3F8 94 aa9.34□□□□□ -0.91
UPF1-210ENST00000600689 KRTAP12-2P59991 146 aa9.28□□□□□ -0.92
UPF1-210ENST00000600689 NDUFAF8A1L188 74 aa9.25□□□□□ -0.93
UPF1-210ENST00000600689 MT1HL1P0DM35 61 aa9.18□□□□□ -0.94
UPF1-210ENST00000600689 XP32Q5T750 250 aa9.18□□□□□ -0.94
UPF1-210ENST00000600689 LPAP08519 4548 aa9.16□□□□□ -0.94
UPF1-210ENST00000600689 ABCA13Q86UQ4 5058 aa9.14□□□□□ -0.95
UPF1-210ENST00000600689 KRTAP12-1P59990 96 aa9.09□□□□□ -0.95
UPF1-210ENST00000600689 LRP2P98164 4655 aa9.07□□□□□ -0.96
UPF1-210ENST00000600689 KRTAP15-1Q3LI76 137 aa9.04□□□□□ -0.96
UPF1-210ENST00000600689 KRTAP4-5Q9BYR2 181 aa9.04□□□□□ -0.96
UPF1-210ENST00000600689 M0QZ58 72 aa8.89□□□□□ -0.99
UPF1-210ENST00000600689 R4GN34 69 aa8.8□□□□□ -1
UPF1-210ENST00000600689 HERC2O95714 4834 aa8.76□□□□□ -1.01
UPF1-210ENST00000600689 LORP23490 312 aaPredicted RBP8.69□□□□□ -1.02
UPF1-210ENST00000600689 J3QL48 77 aa8.62□□□□□ -1.03
UPF1-210ENST00000600689 MUC17Q685J3 4493 aa8.61□□□□□ -1.03
UPF1-210ENST00000600689 PLAC4Q8WY50 150 aa8.6□□□□□ -1.03
UPF1-210ENST00000600689 MUC2Q02817 5179 aa8.6□□□□□ -1.03
UPF1-210ENST00000600689 KRTAP4-1Q9BYQ7 146 aa8.54□□□□□ -1.04
UPF1-210ENST00000600689 BIRC6Q9NR09 4857 aa8.53□□□□□ -1.04
UPF1-210ENST00000600689 SEC61BP60468 96 aaKnown RBP8.48□□□□□ -1.05
UPF1-210ENST00000600689 PCLOQ9Y6V0 5065 aa8.48□□□□□ -1.05
UPF1-210ENST00000600689 CAMK2N1Q7Z7J9 78 aa8.48□□□□□ -1.05
UPF1-210ENST00000600689 HERC1Q15751 4861 aa8.46□□□□□ -1.06
UPF1-210ENST00000600689 LUZP6Q538Z0 58 aa8.33□□□□□ -1.08
UPF1-210ENST00000600689 KRTAP19-2Q3LHN2 52 aa8.29□□□□□ -1.08
UPF1-210ENST00000600689 HMCN2Q8NDA2 5059 aa8.25□□□□□ -1.09
UPF1-210ENST00000600689 FLGP20930 4061 aaPredicted RBP8.16□□□□□ -1.1
UPF1-210ENST00000600689 FAT4Q6V0I7 4981 aa8.13□□□□□ -1.11
UPF1-210ENST00000600689 PP632Q6XCG6 107 aa8.12□□□□□ -1.11
UPF1-210ENST00000600689 RNF213Q63HN8 5207 aa8.09□□□□□ -1.11
UPF1-210ENST00000600689 UBR4Q5T4S7 5183 aa8.05□□□□□ -1.12
UPF1-210ENST00000600689 TNP1P09430 55 aa8.02□□□□□ -1.13
UPF1-210ENST00000600689 LCE2CQ5TA81 110 aa7.9□□□□□ -1.14
UPF1-210ENST00000600689 M0R2T5 61 aa7.73□□□□□ -1.17
UPF1-210ENST00000600689 MT1HP80294 61 aa7.7□□□□□ -1.18
UPF1-210ENST00000600689 SPRR5A0A1B0GTR4 108 aa7.64□□□□□ -1.19
UPF1-210ENST00000600689 LCE3AQ5TA76 89 aa7.64□□□□□ -1.19
UPF1-210ENST00000600689 KRTAP19-1Q8IUB9 90 aa7.58□□□□□ -1.2
UPF1-210ENST00000600689 KRTAP23-1A1A580 65 aa7.53□□□□□ -1.2
UPF1-210ENST00000600689 MT1FP04733 61 aa7.53□□□□□ -1.2
UPF1-210ENST00000600689 SPRR2GQ9BYE4 73 aa7.53□□□□□ -1.2
UPF1-210ENST00000600689 MT2AP02795 61 aa7.52□□□□□ -1.21
UPF1-210ENST00000600689 KRTAP10-10P60014 251 aa7.51□□□□□ -1.21
UPF1-210ENST00000600689 KRTAP9-8Q9BYQ0 159 aa7.49□□□□□ -1.21
UPF1-210ENST00000600689 MT1BP07438 61 aa7.21□□□□□ -1.26
UPF1-210ENST00000600689 KRTAP19-8Q3LI54 63 aa7.21□□□□□ -1.26
UPF1-210ENST00000600689 PRO2289Q9P1D8 64 aa7.2□□□□□ -1.26
UPF1-210ENST00000600689 KRTAP12-3P60328 96 aa7.19□□□□□ -1.26
UPF1-210ENST00000600689 KRTAP8-1Q8IUC2 63 aa7.19□□□□□ -1.26
UPF1-210ENST00000600689 KRTAP9-3Q9BYQ3 159 aa7.17□□□□□ -1.26
UPF1-210ENST00000600689 KRTAP10-12P60413 245 aa7.15□□□□□ -1.27
UPF1-210ENST00000600689 KRTAP10-5P60370 271 aa7.14□□□□□ -1.27
UPF1-210ENST00000600689 USH2AO75445 5202 aa7.14□□□□□ -1.27
UPF1-210ENST00000600689 MT1XP80297 61 aa7.13□□□□□ -1.27
UPF1-210ENST00000600689 KRTAP10-7P60409 375 aaPredicted RBP7.1□□□□□ -1.27
UPF1-210ENST00000600689 INE1O15225 51 aa7.01□□□□□ -1.29
UPF1-210ENST00000600689 KMT2DO14686 5537 aa7□□□□□ -1.29
UPF1-210ENST00000600689 LCE2BO14633 110 aa6.97□□□□□ -1.29
UPF1-210ENST00000600689 LCE2AQ5TA79 106 aaPredicted RBP6.95□□□□□ -1.3
UPF1-210ENST00000600689 KRTAP19-5Q3LI72 72 aa6.84□□□□□ -1.31
UPF1-210ENST00000600689 KRTAP4-8A0A0G2JLE6 195 aa6.72□□□□□ -1.33
UPF1-210ENST00000600689 LCE3CQ5T5A8 94 aa6.72□□□□□ -1.33
UPF1-210ENST00000600689 KRTAP4-8Q9BYQ9 185 aa6.72□□□□□ -1.33
UPF1-210ENST00000600689 FSIP2Q5CZC0 6907 aa6.68□□□□□ -1.34
UPF1-210ENST00000600689 KRTAP4-7Q9BYR0 210 aa6.65□□□□□ -1.35
UPF1-210ENST00000600689 KRTAP9-6A8MVA2 160 aa6.64□□□□□ -1.35
UPF1-210ENST00000600689 SSPOA2VEC9 5147 aa6.55□□□□□ -1.36
UPF1-210ENST00000600689 KRTAP19-7Q3SYF9 63 aa6.34□□□□□ -1.39
UPF1-210ENST00000600689 LCE2DQ5TA82 110 aaPredicted RBP6.29□□□□□ -1.4
UPF1-210ENST00000600689 KRTAP2-3P0C7H8 128 aa6.27□□□□□ -1.41
UPF1-210ENST00000600689 KRTAP2-4Q9BYR9 128 aa6.27□□□□□ -1.41
UPF1-210ENST00000600689 KRTAP2-1Q9BYU5 128 aa6.27□□□□□ -1.41
UPF1-210ENST00000600689 KRTAP19-6Q3LI70 58 aa6.23□□□□□ -1.41
UPF1-210ENST00000600689 CRCT1Q9UGL9 99 aa6.19□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 96.7 ms