RNA–Protein interactions for RNA: ENST00000598309.1

USHBP1-208, Transcript of USH1 protein network component harmonin binding protein 1, humanhuman

TSL 4

Gene USHBP1, Length 549 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1-208ENST00000598309 OCR1Q9BZK8 76 aa7.54□□□□□ -1.2
USHBP1-208ENST00000598309 A8MUN3 132 aa7.52□□□□□ -1.21
USHBP1-208ENST00000598309 KLKP1Q107X0 134 aa7.52□□□□□ -1.21
USHBP1-208ENST00000598309 MP68P56378 58 aa7.51□□□□□ -1.21
USHBP1-208ENST00000598309 LINC00208Q96KT6 92 aa7.51□□□□□ -1.21
USHBP1-208ENST00000598309 NDUFC1O43677 76 aa7.48□□□□□ -1.21
USHBP1-208ENST00000598309 KRTAP19-8Q3LI54 63 aa7.48□□□□□ -1.21
USHBP1-208ENST00000598309 Q5VV11 94 aa7.47□□□□□ -1.21
USHBP1-208ENST00000598309 MT1BP07438 61 aa7.46□□□□□ -1.22
USHBP1-208ENST00000598309 IMUPQ9GZP8 106 aa7.46□□□□□ -1.22
USHBP1-208ENST00000598309 CRIPTQ9P021 101 aa7.45□□□□□ -1.22
USHBP1-208ENST00000598309 H3BPC8 53 aa7.43□□□□□ -1.22
USHBP1-208ENST00000598309 H0YAA0 97 aa7.42□□□□□ -1.22
USHBP1-208ENST00000598309 MACF1Q9UPN3 7388 aaKnown RBP7.4□□□□□ -1.23
USHBP1-208ENST00000598309 SCGB1A1P11684 91 aa7.38□□□□□ -1.23
USHBP1-208ENST00000598309 A6NN06 94 aa7.35□□□□□ -1.23
USHBP1-208ENST00000598309 DMAC1Q96GE9 116 aa7.3□□□□□ -1.24
USHBP1-208ENST00000598309 KRTAP10-5P60370 271 aa7.29□□□□□ -1.24
USHBP1-208ENST00000598309 ADM2Q7Z4H4 148 aa7.29□□□□□ -1.24
USHBP1-208ENST00000598309 SYNE2Q8WXH0 6885 aaKnown RBP7.28□□□□□ -1.24
USHBP1-208ENST00000598309 KRTAP6-3Q3LI67 103 aa7.28□□□□□ -1.24
USHBP1-208ENST00000598309 K7ERU9 68 aa7.27□□□□□ -1.25
USHBP1-208ENST00000598309 MT-ATP8P03928 68 aa7.24□□□□□ -1.25
USHBP1-208ENST00000598309 SMIM20Q8N5G0 67 aa7.23□□□□□ -1.25
USHBP1-208ENST00000598309 TRAV7A0A075B6U4 112 aa7.19□□□□□ -1.26
USHBP1-208ENST00000598309 C20orf197Q8N268 126 aa7.19□□□□□ -1.26
USHBP1-208ENST00000598309 P0C880 135 aa7.13□□□□□ -1.27
USHBP1-208ENST00000598309 ACYP2P14621 99 aa7.12□□□□□ -1.27
USHBP1-208ENST00000598309 R4GN34 69 aa7.12□□□□□ -1.27
USHBP1-208ENST00000598309 KRTAP3-2Q9BYR7 98 aa7.09□□□□□ -1.27
USHBP1-208ENST00000598309 M0QZ58 72 aa7.06□□□□□ -1.28
USHBP1-208ENST00000598309 PLAC4Q8WY50 150 aa7.06□□□□□ -1.28
USHBP1-208ENST00000598309 SPTSSBQ8NFR3 76 aa7.05□□□□□ -1.28
USHBP1-208ENST00000598309 PRO2289Q9P1D8 64 aa7.05□□□□□ -1.28
USHBP1-208ENST00000598309 MT1XP80297 61 aa7.01□□□□□ -1.29
USHBP1-208ENST00000598309 SNURFQ9Y675 71 aa7.01□□□□□ -1.29
USHBP1-208ENST00000598309 KRTAP5-9P26371 169 aa6.99□□□□□ -1.29
USHBP1-208ENST00000598309 CHKB-CPT1BH3BT56 60 aa6.98□□□□□ -1.29
USHBP1-208ENST00000598309 SERP2Q8N6R1 65 aa6.97□□□□□ -1.29
USHBP1-208ENST00000598309 SPANXA2-OT1Q8N9U9 137 aa6.97□□□□□ -1.29
USHBP1-208ENST00000598309 LINC01554Q52M75 96 aa6.93□□□□□ -1.3
USHBP1-208ENST00000598309 NEBP20929 6669 aa6.9□□□□□ -1.3
USHBP1-208ENST00000598309 MUC12Q9UKN1 5478 aa6.88□□□□□ -1.31
USHBP1-208ENST00000598309 KRTAP12-2P59991 146 aa6.86□□□□□ -1.31
USHBP1-208ENST00000598309 KMT2DO14686 5537 aa6.82□□□□□ -1.32
USHBP1-208ENST00000598309 KRTAP8-1Q8IUC2 63 aa6.76□□□□□ -1.33
USHBP1-208ENST00000598309 SPRR2FQ96RM1 72 aa6.76□□□□□ -1.33
USHBP1-208ENST00000598309 COX7CP15954 63 aa6.75□□□□□ -1.33
USHBP1-208ENST00000598309 COA5Q86WW8 74 aa6.74□□□□□ -1.33
USHBP1-208ENST00000598309 KRTAP20-1Q3LI63 56 aa6.71□□□□□ -1.34
USHBP1-208ENST00000598309 MDN1Q9NU22 5596 aa6.7□□□□□ -1.34
USHBP1-208ENST00000598309 KRTAP13-4Q3LI77 160 aa6.68□□□□□ -1.34
USHBP1-208ENST00000598309 KRTAP10-7P60409 375 aaPredicted RBP6.67□□□□□ -1.34
USHBP1-208ENST00000598309 KRTAP10-12P60413 245 aa6.67□□□□□ -1.34
USHBP1-208ENST00000598309 KRTAP4-8A0A0G2JLE6 195 aa6.65□□□□□ -1.34
USHBP1-208ENST00000598309 H7BZZ5 65 aa6.65□□□□□ -1.34
USHBP1-208ENST00000598309 KRTAP4-8Q9BYQ9 185 aa6.65□□□□□ -1.34
USHBP1-208ENST00000598309 SPRR2EP22531 72 aa6.64□□□□□ -1.35
USHBP1-208ENST00000598309 SPRR2BP35325 72 aa6.64□□□□□ -1.35
USHBP1-208ENST00000598309 SPRR2AP35326 72 aa6.64□□□□□ -1.35
USHBP1-208ENST00000598309 SEC61GP60059 68 aa6.62□□□□□ -1.35
USHBP1-208ENST00000598309 CYSTM1Q9H1C7 97 aa6.62□□□□□ -1.35
USHBP1-208ENST00000598309 SERP1Q9Y6X1 66 aa6.61□□□□□ -1.35
USHBP1-208ENST00000598309 LCE1AQ5T7P2 110 aa6.58□□□□□ -1.36
USHBP1-208ENST00000598309 KRTAP2-3P0C7H8 128 aa6.55□□□□□ -1.36
USHBP1-208ENST00000598309 CAMK2N1Q7Z7J9 78 aa6.55□□□□□ -1.36
USHBP1-208ENST00000598309 KRTAP2-4Q9BYR9 128 aa6.55□□□□□ -1.36
USHBP1-208ENST00000598309 ANAPC13Q9BS18 74 aa6.52□□□□□ -1.37
USHBP1-208ENST00000598309 A0A1B0GU33 70 aa6.49□□□□□ -1.37
USHBP1-208ENST00000598309 A0A0D9SG42 100 aa6.47□□□□□ -1.37
USHBP1-208ENST00000598309 SPATA8Q6RVD6 105 aa6.46□□□□□ -1.38
USHBP1-208ENST00000598309 SPRR2DP22532 72 aa6.43□□□□□ -1.38
USHBP1-208ENST00000598309 A0A1B0GU69 56 aa6.4□□□□□ -1.38
USHBP1-208ENST00000598309 CCDC179H3BU77 68 aa6.38□□□□□ -1.39
USHBP1-208ENST00000598309 KRTAP12-1P59990 96 aa6.37□□□□□ -1.39
USHBP1-208ENST00000598309 SPINT4Q6UDR6 99 aa6.37□□□□□ -1.39
USHBP1-208ENST00000598309 ATP5EP56381 51 aaPredicted RBP6.36□□□□□ -1.39
USHBP1-208ENST00000598309 KRTAP2-2Q9BYT5 123 aa6.35□□□□□ -1.39
USHBP1-208ENST00000598309 KRTAP2-1Q9BYU5 128 aa6.35□□□□□ -1.39
USHBP1-208ENST00000598309 SMIM26A0A096LP01 95 aa6.33□□□□□ -1.4
USHBP1-208ENST00000598309 KRTAP19-7Q3SYF9 63 aa6.26□□□□□ -1.41
USHBP1-208ENST00000598309 LCE3BQ5TA77 95 aa6.25□□□□□ -1.41
USHBP1-208ENST00000598309 PRR15LQ9BU68 103 aa6.24□□□□□ -1.41
USHBP1-208ENST00000598309 A8MU10 97 aa6.23□□□□□ -1.41
USHBP1-208ENST00000598309 MT1EP04732 61 aa6.22□□□□□ -1.41
USHBP1-208ENST00000598309 TMEM258P61165 79 aa6.19□□□□□ -1.42
USHBP1-208ENST00000598309 LINC01558Q9Y6Z2 57 aa6.18□□□□□ -1.42
USHBP1-208ENST00000598309 LCE5AQ5TCM9 118 aa6.17□□□□□ -1.42
USHBP1-208ENST00000598309 KRTAP19-3Q7Z4W3 81 aa6.15□□□□□ -1.42
USHBP1-208ENST00000598309 KRTAP19-5Q3LI72 72 aa6.1□□□□□ -1.43
USHBP1-208ENST00000598309 TNP1P09430 55 aa6.07□□□□□ -1.44
USHBP1-208ENST00000598309 C10orf95Q9H7T3 257 aa6.07□□□□□ -1.44
USHBP1-208ENST00000598309 UQCR11O14957 56 aa6.03□□□□□ -1.44
USHBP1-208ENST00000598309 MT1GP13640 62 aa6.02□□□□□ -1.45
USHBP1-208ENST00000598309 LCE3AQ5TA76 89 aa6□□□□□ -1.45
USHBP1-208ENST00000598309 PP632Q6XCG6 107 aa5.98□□□□□ -1.45
USHBP1-208ENST00000598309 MT1LQ93083 61 aa5.94□□□□□ -1.46
USHBP1-208ENST00000598309 MT1MQ8N339 61 aa5.91□□□□□ -1.46
USHBP1-208ENST00000598309 MIR22HGQ0VDD5 57 aa5.88□□□□□ -1.47
USHBP1-208ENST00000598309 DSTQ03001 7570 aaKnown RBP5.87□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms