RNA–Protein interactions for RNA: ENST00000597776.1

LSM4-205, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, human

TSL 2

Gene LSM4, Length 446 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LSM4-205	ENST00000597776	TP53AIP1	Q9HCN2	124 aa		4.59	□□□□□ -1.67
LSM4-205	ENST00000597776	ETDB	Q3ZM63	59 aa		4.58	□□□□□ -1.68
LSM4-205	ENST00000597776	IMUP	Q9GZP8	106 aa		4.58	□□□□□ -1.68
LSM4-205	ENST00000597776	CYP4F30P	Q9H0H9	118 aa		4.56	□□□□□ -1.68
LSM4-205	ENST00000597776	CRIPT	Q9P021	101 aa		4.55	□□□□□ -1.68
LSM4-205	ENST00000597776	FAM240A	A0A1B0GVK7	77 aa		4.51	□□□□□ -1.69
LSM4-205	ENST00000597776	ACYP1	P07311	99 aa		4.51	□□□□□ -1.69
LSM4-205	ENST00000597776	ATP5EP2	Q5VTU8	51 aa		4.51	□□□□□ -1.69
LSM4-205	ENST00000597776	TRAV22	A0A0B4J277	110 aa		4.5	□□□□□ -1.69
LSM4-205	ENST00000597776	LOC101927531	A0A1B0GV80	90 aa		4.49	□□□□□ -1.69
LSM4-205	ENST00000597776	NDUFC1	O43677	76 aa		4.47	□□□□□ -1.69
LSM4-205	ENST00000597776	KRTAP2-3	P0C7H8	128 aa		4.46	□□□□□ -1.7
LSM4-205	ENST00000597776	SPRR2F	Q96RM1	72 aa		4.46	□□□□□ -1.7
LSM4-205	ENST00000597776	KRTAP2-4	Q9BYR9	128 aa		4.46	□□□□□ -1.7
LSM4-205	ENST00000597776		H0YAA0	97 aa		4.45	□□□□□ -1.7
LSM4-205	ENST00000597776	ADM2	Q7Z4H4	148 aa		4.45	□□□□□ -1.7
LSM4-205	ENST00000597776	SPRR2E	P22531	72 aa		4.44	□□□□□ -1.7
LSM4-205	ENST00000597776	SPRR2B	P35325	72 aa		4.44	□□□□□ -1.7
LSM4-205	ENST00000597776	SPRR2A	P35326	72 aa		4.44	□□□□□ -1.7
LSM4-205	ENST00000597776	MT1X	P80297	61 aa		4.44	□□□□□ -1.7
LSM4-205	ENST00000597776		A8MUN3	132 aa		4.43	□□□□□ -1.7
LSM4-205	ENST00000597776		H0Y9P7	68 aa		4.42	□□□□□ -1.7
LSM4-205	ENST00000597776	HIST1H4A	P62805	103 aa	Known RBP	4.42	□□□□□ -1.7
LSM4-205	ENST00000597776	PRO2289	Q9P1D8	64 aa		4.42	□□□□□ -1.7
LSM4-205	ENST00000597776	ATOX1	O00244	68 aa		4.4	□□□□□ -1.71
LSM4-205	ENST00000597776	UQCRQ	O14949	82 aa		4.4	□□□□□ -1.71
LSM4-205	ENST00000597776	LINC00643	Q86TS7	51 aa		4.39	□□□□□ -1.71
LSM4-205	ENST00000597776	KRTAP8-1	Q8IUC2	63 aa		4.39	□□□□□ -1.71
LSM4-205	ENST00000597776	PLAC4	Q8WY50	150 aa		4.37	□□□□□ -1.71
LSM4-205	ENST00000597776	LCE1A	Q5T7P2	110 aa		4.36	□□□□□ -1.71
LSM4-205	ENST00000597776		A0A1B0GV90	55 aa		4.35	□□□□□ -1.71
LSM4-205	ENST00000597776		P0C880	135 aa		4.33	□□□□□ -1.72
LSM4-205	ENST00000597776	KRTAP12-2	P59991	146 aa		4.33	□□□□□ -1.72
LSM4-205	ENST00000597776	LINC00208	Q96KT6	92 aa		4.33	□□□□□ -1.72
LSM4-205	ENST00000597776		R4GN34	69 aa		4.32	□□□□□ -1.72
LSM4-205	ENST00000597776	KRTAP4-8	A0A0G2JLE6	195 aa		4.31	□□□□□ -1.72
LSM4-205	ENST00000597776		J3QR89	54 aa		4.31	□□□□□ -1.72
LSM4-205	ENST00000597776	KRTAP4-8	Q9BYQ9	185 aa		4.31	□□□□□ -1.72
LSM4-205	ENST00000597776		M0QZ58	72 aa		4.3	□□□□□ -1.72
LSM4-205	ENST00000597776	KRTAP2-2	Q9BYT5	123 aa		4.3	□□□□□ -1.72
LSM4-205	ENST00000597776	KRTAP2-1	Q9BYU5	128 aa		4.3	□□□□□ -1.72
LSM4-205	ENST00000597776	OCR1	Q9BZK8	76 aa		4.3	□□□□□ -1.72
LSM4-205	ENST00000597776	SPRR2D	P22532	72 aa		4.29	□□□□□ -1.72
LSM4-205	ENST00000597776	MP68	P56378	58 aa		4.29	□□□□□ -1.72
LSM4-205	ENST00000597776	LINC01554	Q52M75	96 aa		4.27	□□□□□ -1.73
LSM4-205	ENST00000597776	C20orf197	Q8N268	126 aa		4.27	□□□□□ -1.73
LSM4-205	ENST00000597776	KRTAP3-2	Q9BYR7	98 aa		4.26	□□□□□ -1.73
LSM4-205	ENST00000597776		H3BPC8	53 aa		4.25	□□□□□ -1.73
LSM4-205	ENST00000597776	KRTAP10-7	P60409	375 aa	Predicted RBP	4.24	□□□□□ -1.73
LSM4-205	ENST00000597776	DMAC1	Q96GE9	116 aa		4.21	□□□□□ -1.74
LSM4-205	ENST00000597776	SCGB1A1	P11684	91 aa		4.2	□□□□□ -1.74
LSM4-205	ENST00000597776	KRTAP10-12	P60413	245 aa		4.2	□□□□□ -1.74
LSM4-205	ENST00000597776	LCE3B	Q5TA77	95 aa		4.19	□□□□□ -1.74
LSM4-205	ENST00000597776		K7ERU9	68 aa		4.15	□□□□□ -1.75
LSM4-205	ENST00000597776	SMIM20	Q8N5G0	67 aa		4.13	□□□□□ -1.75
LSM4-205	ENST00000597776	MT-ATP8	P03928	68 aa		4.12	□□□□□ -1.75
LSM4-205	ENST00000597776	TRAV7	A0A075B6U4	112 aa		4.1	□□□□□ -1.75
LSM4-205	ENST00000597776	ACYP2	P14621	99 aa		4.06	□□□□□ -1.76
LSM4-205	ENST00000597776	SPTSSB	Q8NFR3	76 aa		4.04	□□□□□ -1.76
LSM4-205	ENST00000597776	DST	Q03001	7570 aa	Known RBP	4.02	□□□□□ -1.77
LSM4-205	ENST00000597776	GPR98	Q8WXG9	6306 aa		4.02	□□□□□ -1.77
LSM4-205	ENST00000597776	CHKB-CPT1B	H3BT56	60 aa		4	□□□□□ -1.77
LSM4-205	ENST00000597776	KRTAP13-4	Q3LI77	160 aa		3.99	□□□□□ -1.77
LSM4-205	ENST00000597776	SNURF	Q9Y675	71 aa		3.99	□□□□□ -1.77
LSM4-205	ENST00000597776	SPANXA2-OT1	Q8N9U9	137 aa		3.98	□□□□□ -1.77
LSM4-205	ENST00000597776	KRTAP19-7	Q3SYF9	63 aa		3.97	□□□□□ -1.77
LSM4-205	ENST00000597776	LCE5A	Q5TCM9	118 aa		3.97	□□□□□ -1.77
LSM4-205	ENST00000597776	SERP2	Q8N6R1	65 aa		3.97	□□□□□ -1.77
LSM4-205	ENST00000597776	CAMK2N1	Q7Z7J9	78 aa		3.96	□□□□□ -1.78
LSM4-205	ENST00000597776	KRTAP4-9	Q9BYQ8	210 aa		3.96	□□□□□ -1.78
LSM4-205	ENST00000597776	MT1E	P04732	61 aa		3.94	□□□□□ -1.78
LSM4-205	ENST00000597776	KRTAP19-3	Q7Z4W3	81 aa		3.93	□□□□□ -1.78
LSM4-205	ENST00000597776		A0A0D9SG42	100 aa		3.85	□□□□□ -1.79
LSM4-205	ENST00000597776	COA5	Q86WW8	74 aa		3.85	□□□□□ -1.79
LSM4-205	ENST00000597776	CYSTM1	Q9H1C7	97 aa		3.85	□□□□□ -1.79
LSM4-205	ENST00000597776	COX7C	P15954	63 aa		3.84	□□□□□ -1.79
LSM4-205	ENST00000597776	LCE1D	Q5T752	114 aa		3.84	□□□□□ -1.79
LSM4-205	ENST00000597776	KRTAP19-5	Q3LI72	72 aa		3.83	□□□□□ -1.8
LSM4-205	ENST00000597776	MT1G	P13640	62 aa		3.8	□□□□□ -1.8
LSM4-205	ENST00000597776		H7BZZ5	65 aa		3.79	□□□□□ -1.8
LSM4-205	ENST00000597776	SEC61G	P60059	68 aa		3.79	□□□□□ -1.8
LSM4-205	ENST00000597776	SPATA8	Q6RVD6	105 aa		3.79	□□□□□ -1.8
LSM4-205	ENST00000597776	HMCN1	Q96RW7	5635 aa		3.79	□□□□□ -1.8
LSM4-205	ENST00000597776	MT4	P47944	62 aa		3.78	□□□□□ -1.8
LSM4-205	ENST00000597776	SPINT4	Q6UDR6	99 aa		3.78	□□□□□ -1.8
LSM4-205	ENST00000597776	SERP1	Q9Y6X1	66 aa		3.77	□□□□□ -1.81
LSM4-205	ENST00000597776	PP632	Q6XCG6	107 aa		3.76	□□□□□ -1.81
LSM4-205	ENST00000597776	MT1M	Q8N339	61 aa		3.76	□□□□□ -1.81
LSM4-205	ENST00000597776	KRTAP12-1	P59990	96 aa		3.75	□□□□□ -1.81
LSM4-205	ENST00000597776	LCE4A	Q5TA78	99 aa		3.75	□□□□□ -1.81
LSM4-205	ENST00000597776	MT1L	Q93083	61 aa		3.74	□□□□□ -1.81
LSM4-205	ENST00000597776	AHNAK2	Q8IVF2	5795 aa		3.73	□□□□□ -1.81
LSM4-205	ENST00000597776		A0A1B0GU33	70 aa		3.72	□□□□□ -1.81
LSM4-205	ENST00000597776	KRTAP4-3	Q9BYR4	195 aa		3.72	□□□□□ -1.81
LSM4-205	ENST00000597776	ANAPC13	Q9BS18	74 aa		3.7	□□□□□ -1.82
LSM4-205	ENST00000597776	LCE3A	Q5TA76	89 aa		3.67	□□□□□ -1.82
LSM4-205	ENST00000597776	KRTAP5-4	Q6L8H1	288 aa		3.67	□□□□□ -1.82
LSM4-205	ENST00000597776	C10orf95	Q9H7T3	257 aa		3.66	□□□□□ -1.82
LSM4-205	ENST00000597776		A0A1B0GU69	56 aa		3.65	□□□□□ -1.83
LSM4-205	ENST00000597776	KRTAP4-6	Q9BYQ5	205 aa		3.65	□□□□□ -1.83

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