RNA–Protein interactions for RNA: ENST00000596842.5

UPF1-204, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,825 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-204ENST00000596842 RPS29P62273 56 aaKnown RBP8.07□□□□□ -1.12
UPF1-204ENST00000596842 PKHD1L1Q86WI1 4243 aa8.05□□□□□ -1.12
UPF1-204ENST00000596842 RPL37P61927 97 aaKnown RBP8.05□□□□□ -1.12
UPF1-204ENST00000596842 COX6B2Q6YFQ2 88 aa8.04□□□□□ -1.12
UPF1-204ENST00000596842 LRP1Q07954 4544 aaKnown RBP8.04□□□□□ -1.12
UPF1-204ENST00000596842 APOBP04114 4563 aaKnown RBP7.97□□□□□ -1.13
UPF1-204ENST00000596842 KRTAP10-4P60372 401 aaPredicted RBP7.93□□□□□ -1.14
UPF1-204ENST00000596842 TPRXLQ17RH7 258 aa7.91□□□□□ -1.14
UPF1-204ENST00000596842 A0A1B0GVY2 172 aa7.9□□□□□ -1.14
UPF1-204ENST00000596842 KRTAP10-8P60410 259 aa7.87□□□□□ -1.15
UPF1-204ENST00000596842 KMT2CQ8NEZ4 4911 aaKnown RBP7.87□□□□□ -1.15
UPF1-204ENST00000596842 HSPG2P98160 4391 aa7.86□□□□□ -1.15
UPF1-204ENST00000596842 Q5VSD8 79 aa7.85□□□□□ -1.15
UPF1-204ENST00000596842 KRTAP13-4Q3LI77 160 aa7.84□□□□□ -1.15
UPF1-204ENST00000596842 S4R3F8 94 aa7.84□□□□□ -1.15
UPF1-204ENST00000596842 FAT3Q8TDW7 4589 aa7.8□□□□□ -1.16
UPF1-204ENST00000596842 XP32Q5T750 250 aa7.79□□□□□ -1.16
UPF1-204ENST00000596842 KRTAP10-6P60371 365 aaPredicted RBP7.79□□□□□ -1.16
UPF1-204ENST00000596842 KRTAP3-3Q9BYR6 98 aa7.78□□□□□ -1.16
UPF1-204ENST00000596842 TNXBP22105 4242 aa7.73□□□□□ -1.17
UPF1-204ENST00000596842 RYR2Q92736 4967 aa7.71□□□□□ -1.18
UPF1-204ENST00000596842 KRTAP3-2Q9BYR7 98 aa7.69□□□□□ -1.18
UPF1-204ENST00000596842 LPAP08519 4548 aa7.67□□□□□ -1.18
UPF1-204ENST00000596842 KIAA1109Q2LD37 5005 aa7.65□□□□□ -1.19
UPF1-204ENST00000596842 KRTAP15-1Q3LI76 137 aa7.64□□□□□ -1.19
UPF1-204ENST00000596842 LRP2P98164 4655 aa7.63□□□□□ -1.19
UPF1-204ENST00000596842 KRTAP12-2P59991 146 aa7.62□□□□□ -1.19
UPF1-204ENST00000596842 KRTAP17-1Q9BYP8 105 aa7.58□□□□□ -1.2
UPF1-204ENST00000596842 RYR3Q15413 4870 aa7.57□□□□□ -1.2
UPF1-204ENST00000596842 RYR1P21817 5038 aa7.53□□□□□ -1.2
UPF1-204ENST00000596842 PLAC4Q8WY50 150 aa7.53□□□□□ -1.2
UPF1-204ENST00000596842 KRTAP21-3Q3LHN1 58 aa7.49□□□□□ -1.21
UPF1-204ENST00000596842 KRTAP12-1P59990 96 aa7.47□□□□□ -1.21
UPF1-204ENST00000596842 M0QZ58 72 aa7.47□□□□□ -1.21
UPF1-204ENST00000596842 MT1HL1P0DM35 61 aa7.47□□□□□ -1.21
UPF1-204ENST00000596842 R4GN34 69 aa7.42□□□□□ -1.22
UPF1-204ENST00000596842 CAMK2N1Q7Z7J9 78 aa7.37□□□□□ -1.23
UPF1-204ENST00000596842 ABCA13Q86UQ4 5058 aa7.36□□□□□ -1.23
UPF1-204ENST00000596842 KRTAP4-5Q9BYR2 181 aa7.29□□□□□ -1.24
UPF1-204ENST00000596842 EPPK1P58107 5090 aaKnown RBP7.28□□□□□ -1.24
UPF1-204ENST00000596842 SEC61BP60468 96 aaKnown RBP7.26□□□□□ -1.25
UPF1-204ENST00000596842 LORP23490 312 aaPredicted RBP7.24□□□□□ -1.25
UPF1-204ENST00000596842 J3QL48 77 aa7.2□□□□□ -1.26
UPF1-204ENST00000596842 MUC2Q02817 5179 aa7.16□□□□□ -1.26
UPF1-204ENST00000596842 KRTAP4-1Q9BYQ7 146 aa7.09□□□□□ -1.27
UPF1-204ENST00000596842 MUC17Q685J3 4493 aa6.99□□□□□ -1.29
UPF1-204ENST00000596842 HERC2O95714 4834 aa6.96□□□□□ -1.3
UPF1-204ENST00000596842 FAT4Q6V0I7 4981 aa6.79□□□□□ -1.32
UPF1-204ENST00000596842 PP632Q6XCG6 107 aa6.78□□□□□ -1.32
UPF1-204ENST00000596842 TNP1P09430 55 aa6.74□□□□□ -1.33
UPF1-204ENST00000596842 HERC1Q15751 4861 aa6.74□□□□□ -1.33
UPF1-204ENST00000596842 FLGP20930 4061 aaPredicted RBP6.73□□□□□ -1.33
UPF1-204ENST00000596842 M0R2T5 61 aa6.73□□□□□ -1.33
UPF1-204ENST00000596842 KRTAP19-2Q3LHN2 52 aa6.71□□□□□ -1.34
UPF1-204ENST00000596842 PCLOQ9Y6V0 5065 aa6.69□□□□□ -1.34
UPF1-204ENST00000596842 RNF213Q63HN8 5207 aa6.62□□□□□ -1.35
UPF1-204ENST00000596842 PRO2289Q9P1D8 64 aa6.58□□□□□ -1.36
UPF1-204ENST00000596842 BIRC6Q9NR09 4857 aa6.55□□□□□ -1.36
UPF1-204ENST00000596842 KRTAP10-10P60014 251 aa6.45□□□□□ -1.38
UPF1-204ENST00000596842 UBR4Q5T4S7 5183 aa6.4□□□□□ -1.38
UPF1-204ENST00000596842 HMCN2Q8NDA2 5059 aa6.4□□□□□ -1.38
UPF1-204ENST00000596842 LCE3AQ5TA76 89 aa6.35□□□□□ -1.39
UPF1-204ENST00000596842 LCE2CQ5TA81 110 aa6.35□□□□□ -1.39
UPF1-204ENST00000596842 KRTAP19-1Q8IUB9 90 aa6.35□□□□□ -1.39
UPF1-204ENST00000596842 SPRR2GQ9BYE4 73 aa6.28□□□□□ -1.4
UPF1-204ENST00000596842 INE1O15225 51 aa6.27□□□□□ -1.41
UPF1-204ENST00000596842 MT1HP80294 61 aa6.26□□□□□ -1.41
UPF1-204ENST00000596842 MT1FP04733 61 aa6.26□□□□□ -1.41
UPF1-204ENST00000596842 MT2AP02795 61 aa6.21□□□□□ -1.41
UPF1-204ENST00000596842 KRTAP23-1A1A580 65 aa6.2□□□□□ -1.42
UPF1-204ENST00000596842 SPRR5A0A1B0GTR4 108 aa6.14□□□□□ -1.43
UPF1-204ENST00000596842 KRTAP9-8Q9BYQ0 159 aa6.08□□□□□ -1.44
UPF1-204ENST00000596842 KRTAP10-12P60413 245 aa6.03□□□□□ -1.44
UPF1-204ENST00000596842 KRTAP12-3P60328 96 aa6.01□□□□□ -1.45
UPF1-204ENST00000596842 USH2AO75445 5202 aa6□□□□□ -1.45
UPF1-204ENST00000596842 KRTAP10-5P60370 271 aa6□□□□□ -1.45
UPF1-204ENST00000596842 MT1BP07438 61 aa5.99□□□□□ -1.45
UPF1-204ENST00000596842 MT1XP80297 61 aa5.99□□□□□ -1.45
UPF1-204ENST00000596842 KMT2DO14686 5537 aa5.97□□□□□ -1.45
UPF1-204ENST00000596842 KRTAP10-7P60409 375 aaPredicted RBP5.97□□□□□ -1.45
UPF1-204ENST00000596842 KRTAP8-1Q8IUC2 63 aa5.96□□□□□ -1.46
UPF1-204ENST00000596842 KRTAP19-8Q3LI54 63 aa5.92□□□□□ -1.46
UPF1-204ENST00000596842 KRTAP9-3Q9BYQ3 159 aa5.79□□□□□ -1.48
UPF1-204ENST00000596842 KRTAP19-5Q3LI72 72 aa5.74□□□□□ -1.49
UPF1-204ENST00000596842 KRTAP4-8A0A0G2JLE6 195 aa5.69□□□□□ -1.5
UPF1-204ENST00000596842 KRTAP4-8Q9BYQ9 185 aa5.69□□□□□ -1.5
UPF1-204ENST00000596842 FSIP2Q5CZC0 6907 aa5.67□□□□□ -1.5
UPF1-204ENST00000596842 LCE2BO14633 110 aa5.65□□□□□ -1.5
UPF1-204ENST00000596842 LCE3CQ5T5A8 94 aa5.58□□□□□ -1.52
UPF1-204ENST00000596842 KRTAP4-7Q9BYR0 210 aa5.55□□□□□ -1.52
UPF1-204ENST00000596842 OBSCNQ5VST9 7968 aa5.53□□□□□ -1.52
UPF1-204ENST00000596842 KRTAP9-6A8MVA2 160 aa5.44□□□□□ -1.54
UPF1-204ENST00000596842 CRCT1Q9UGL9 99 aa5.42□□□□□ -1.54
UPF1-204ENST00000596842 SYNE1Q8NF91 8797 aaKnown RBP5.41□□□□□ -1.54
UPF1-204ENST00000596842 KRTAP19-7Q3SYF9 63 aa5.32□□□□□ -1.56
UPF1-204ENST00000596842 DSTQ03001 7570 aaKnown RBP5.29□□□□□ -1.56
UPF1-204ENST00000596842 LCE2AQ5TA79 106 aaPredicted RBP5.27□□□□□ -1.57
UPF1-204ENST00000596842 SSPOA2VEC9 5147 aa5.22□□□□□ -1.57
UPF1-204ENST00000596842 MUC12Q9UKN1 5478 aa5.22□□□□□ -1.57
UPF1-204ENST00000596842 MT1LQ93083 61 aa5.19□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 110 ms