RNA–Protein interactions for RNA: ENST00000594948.5

VRK3-209, Transcript of vaccinia related kinase 3, humanhuman

APPRIS P3 TSL 2 BASIC

Gene VRK3, Length 1,847 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-209ENST00000594948 FAT1Q14517 4588 aa6.77□□□□□ -1.33
VRK3-209ENST00000594948 FAT3Q8TDW7 4589 aa6.76□□□□□ -1.33
VRK3-209ENST00000594948 TNXBP22105 4242 aa6.74□□□□□ -1.33
VRK3-209ENST00000594948 KRTAP13-4Q3LI77 160 aa6.73□□□□□ -1.33
VRK3-209ENST00000594948 XP32Q5T750 250 aa6.73□□□□□ -1.33
VRK3-209ENST00000594948 H3BS24 57 aa6.69□□□□□ -1.34
VRK3-209ENST00000594948 LRP1Q07954 4544 aaKnown RBP6.66□□□□□ -1.34
VRK3-209ENST00000594948 CRIPTQ9P021 101 aa6.66□□□□□ -1.34
VRK3-209ENST00000594948 HSPG2P98160 4391 aa6.66□□□□□ -1.34
VRK3-209ENST00000594948 A0A0D9SG42 100 aa6.64□□□□□ -1.35
VRK3-209ENST00000594948 RYR2Q92736 4967 aa6.63□□□□□ -1.35
VRK3-209ENST00000594948 P0C880 135 aa6.62□□□□□ -1.35
VRK3-209ENST00000594948 Q5VSD8 79 aa6.62□□□□□ -1.35
VRK3-209ENST00000594948 TPRXLQ17RH7 258 aa6.6□□□□□ -1.35
VRK3-209ENST00000594948 DMBT1Q9UGM3 2413 aaPredicted RBP6.59□□□□□ -1.35
VRK3-209ENST00000594948 KMT2CQ8NEZ4 4911 aaKnown RBP6.57□□□□□ -1.36
VRK3-209ENST00000594948 KRTAP12-2P59991 146 aa6.53□□□□□ -1.36
VRK3-209ENST00000594948 M0QZ58 72 aa6.53□□□□□ -1.36
VRK3-209ENST00000594948 KRTAP12-1P59990 96 aa6.52□□□□□ -1.37
VRK3-209ENST00000594948 MT1HL1P0DM35 61 aa6.5□□□□□ -1.37
VRK3-209ENST00000594948 SPINT4Q6UDR6 99 aa6.48□□□□□ -1.37
VRK3-209ENST00000594948 C10orf95Q9H7T3 257 aa6.46□□□□□ -1.37
VRK3-209ENST00000594948 RYR3Q15413 4870 aa6.44□□□□□ -1.38
VRK3-209ENST00000594948 RYR1P21817 5038 aa6.42□□□□□ -1.38
VRK3-209ENST00000594948 KRTAP15-1Q3LI76 137 aa6.4□□□□□ -1.38
VRK3-209ENST00000594948 KRTAP17-1Q9BYP8 105 aa6.38□□□□□ -1.39
VRK3-209ENST00000594948 MYCBP2O75592 4640 aa6.33□□□□□ -1.4
VRK3-209ENST00000594948 R4GN34 69 aa6.25□□□□□ -1.41
VRK3-209ENST00000594948 LRP2P98164 4655 aa6.21□□□□□ -1.41
VRK3-209ENST00000594948 SEC61BP60468 96 aaKnown RBP6.21□□□□□ -1.42
VRK3-209ENST00000594948 EPPK1P58107 5090 aaKnown RBP6.21□□□□□ -1.42
VRK3-209ENST00000594948 NDUFAF8A1L188 74 aa6.2□□□□□ -1.42
VRK3-209ENST00000594948 LPAP08519 4548 aa6.19□□□□□ -1.42
VRK3-209ENST00000594948 KIAA1109Q2LD37 5005 aa6.16□□□□□ -1.42
VRK3-209ENST00000594948 LORP23490 312 aaPredicted RBP6.09□□□□□ -1.43
VRK3-209ENST00000594948 MUC17Q685J3 4493 aa6.08□□□□□ -1.44
VRK3-209ENST00000594948 BIRC6Q9NR09 4857 aa6.07□□□□□ -1.44
VRK3-209ENST00000594948 PP632Q6XCG6 107 aa6.06□□□□□ -1.44
VRK3-209ENST00000594948 J3QL48 77 aa6.05□□□□□ -1.44
VRK3-209ENST00000594948 PLAC4Q8WY50 150 aa6.04□□□□□ -1.44
VRK3-209ENST00000594948 KRTAP19-2Q3LHN2 52 aa6.04□□□□□ -1.44
VRK3-209ENST00000594948 KRTAP4-1Q9BYQ7 146 aa6.04□□□□□ -1.44
VRK3-209ENST00000594948 KRTAP4-5Q9BYR2 181 aa5.99□□□□□ -1.45
VRK3-209ENST00000594948 ABCA13Q86UQ4 5058 aa5.98□□□□□ -1.45
VRK3-209ENST00000594948 HERC2O95714 4834 aa5.96□□□□□ -1.46
VRK3-209ENST00000594948 CAMK2N1Q7Z7J9 78 aa5.94□□□□□ -1.46
VRK3-209ENST00000594948 KRTAP23-1A1A580 65 aa5.88□□□□□ -1.47
VRK3-209ENST00000594948 LUZP6Q538Z0 58 aa5.81□□□□□ -1.48
VRK3-209ENST00000594948 TNP1P09430 55 aa5.8□□□□□ -1.48
VRK3-209ENST00000594948 HERC1Q15751 4861 aa5.79□□□□□ -1.48
VRK3-209ENST00000594948 FLGP20930 4061 aaPredicted RBP5.78□□□□□ -1.48
VRK3-209ENST00000594948 PCLOQ9Y6V0 5065 aa5.77□□□□□ -1.49
VRK3-209ENST00000594948 SPRR5A0A1B0GTR4 108 aa5.69□□□□□ -1.5
VRK3-209ENST00000594948 SPRR2GQ9BYE4 73 aa5.64□□□□□ -1.51
VRK3-209ENST00000594948 A0A0A0MQY5 61 aa5.63□□□□□ -1.51
VRK3-209ENST00000594948 LCE2DQ5TA82 110 aaPredicted RBP5.62□□□□□ -1.51
VRK3-209ENST00000594948 LCE2CQ5TA81 110 aa5.58□□□□□ -1.52
VRK3-209ENST00000594948 KRTAP19-1Q8IUB9 90 aa5.55□□□□□ -1.52
VRK3-209ENST00000594948 HMCN2Q8NDA2 5059 aa5.46□□□□□ -1.53
VRK3-209ENST00000594948 MUC2Q02817 5179 aa5.43□□□□□ -1.54
VRK3-209ENST00000594948 LCE3AQ5TA76 89 aa5.41□□□□□ -1.54
VRK3-209ENST00000594948 MT1HP80294 61 aa5.41□□□□□ -1.54
VRK3-209ENST00000594948 M0R2T5 61 aa5.39□□□□□ -1.55
VRK3-209ENST00000594948 KRTAP19-8Q3LI54 63 aa5.39□□□□□ -1.55
VRK3-209ENST00000594948 MT2AP02795 61 aa5.37□□□□□ -1.55
VRK3-209ENST00000594948 KRTAP8-1Q8IUC2 63 aa5.37□□□□□ -1.55
VRK3-209ENST00000594948 MT1FP04733 61 aa5.36□□□□□ -1.55
VRK3-209ENST00000594948 KRTAP10-10P60014 251 aa5.34□□□□□ -1.55
VRK3-209ENST00000594948 KRTAP9-8Q9BYQ0 159 aa5.32□□□□□ -1.56
VRK3-209ENST00000594948 UBR4Q5T4S7 5183 aa5.28□□□□□ -1.56
VRK3-209ENST00000594948 MT1BP07438 61 aa5.25□□□□□ -1.57
VRK3-209ENST00000594948 KRTAP10-5P60370 271 aa5.25□□□□□ -1.57
VRK3-209ENST00000594948 MT1XP80297 61 aa5.23□□□□□ -1.57
VRK3-209ENST00000594948 FAT4Q6V0I7 4981 aa5.2□□□□□ -1.58
VRK3-209ENST00000594948 KRTAP10-12P60413 245 aa5.19□□□□□ -1.58
VRK3-209ENST00000594948 KRTAP12-3P60328 96 aa5.18□□□□□ -1.58
VRK3-209ENST00000594948 RNF213Q63HN8 5207 aa5.18□□□□□ -1.58
VRK3-209ENST00000594948 INE1O15225 51 aa5.14□□□□□ -1.59
VRK3-209ENST00000594948 PRO2289Q9P1D8 64 aa5.13□□□□□ -1.59
VRK3-209ENST00000594948 KRTAP9-3Q9BYQ3 159 aa5.09□□□□□ -1.59
VRK3-209ENST00000594948 KRTAP10-7P60409 375 aaPredicted RBP5.06□□□□□ -1.6
VRK3-209ENST00000594948 LCE2AQ5TA79 106 aaPredicted RBP4.97□□□□□ -1.61
VRK3-209ENST00000594948 LCE2BO14633 110 aa4.96□□□□□ -1.62
VRK3-209ENST00000594948 LCE3CQ5T5A8 94 aa4.9□□□□□ -1.62
VRK3-209ENST00000594948 KRTAP19-5Q3LI72 72 aa4.89□□□□□ -1.63
VRK3-209ENST00000594948 KRTAP19-4Q3LI73 84 aa4.79□□□□□ -1.64
VRK3-209ENST00000594948 KRTAP9-6A0A140TA67 174 aa4.78□□□□□ -1.64
VRK3-209ENST00000594948 KRTAP9-2Q9BYQ4 174 aa4.72□□□□□ -1.65
VRK3-209ENST00000594948 KRTAP9-6A8MVA2 160 aa4.67□□□□□ -1.66
VRK3-209ENST00000594948 KRTAP19-7Q3SYF9 63 aa4.67□□□□□ -1.66
VRK3-209ENST00000594948 KRTAP4-8A0A0G2JLE6 195 aa4.66□□□□□ -1.66
VRK3-209ENST00000594948 KRTAP2-3P0C7H8 128 aa4.66□□□□□ -1.66
VRK3-209ENST00000594948 KRTAP4-8Q9BYQ9 185 aa4.66□□□□□ -1.66
VRK3-209ENST00000594948 KRTAP2-4Q9BYR9 128 aa4.66□□□□□ -1.66
VRK3-209ENST00000594948 KRTAP2-1Q9BYU5 128 aa4.66□□□□□ -1.66
VRK3-209ENST00000594948 MT1LQ93083 61 aa4.56□□□□□ -1.68
VRK3-209ENST00000594948 MT1EP04732 61 aa4.53□□□□□ -1.68
VRK3-209ENST00000594948 KRTAP4-7Q9BYR0 210 aa4.5□□□□□ -1.69
VRK3-209ENST00000594948 USH2AO75445 5202 aa4.49□□□□□ -1.69
VRK3-209ENST00000594948 KMT2DO14686 5537 aa4.48□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms