RNA–Protein interactions for RNA: ENST00000592604.5

SMARCA4-219, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4, humanhuman

TSL 1 (best)

Gene SMARCA4, Length 2,940 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA4-219ENST00000592604 FAT1Q14517 4588 aa7.81□□□□□ -1.16
SMARCA4-219ENST00000592604 A0A1B0GVY2 172 aa7.77□□□□□ -1.17
SMARCA4-219ENST00000592604 K7ERS5 55 aa7.74□□□□□ -1.17
SMARCA4-219ENST00000592604 KRTAP3-3Q9BYR6 98 aa7.68□□□□□ -1.18
SMARCA4-219ENST00000592604 KRTAP10-6P60371 365 aaPredicted RBP7.67□□□□□ -1.18
SMARCA4-219ENST00000592604 KRTAP15-1Q3LI76 137 aa7.67□□□□□ -1.18
SMARCA4-219ENST00000592604 FAT3Q8TDW7 4589 aa7.65□□□□□ -1.18
SMARCA4-219ENST00000592604 SEC61BP60468 96 aaKnown RBP7.62□□□□□ -1.19
SMARCA4-219ENST00000592604 RPL37P61927 97 aaKnown RBP7.62□□□□□ -1.19
SMARCA4-219ENST00000592604 KRTAP3-2Q9BYR7 98 aa7.61□□□□□ -1.19
SMARCA4-219ENST00000592604 TNXBP22105 4242 aa7.6□□□□□ -1.19
SMARCA4-219ENST00000592604 KRTAP13-4Q3LI77 160 aa7.59□□□□□ -1.19
SMARCA4-219ENST00000592604 KRTAP10-8P60410 259 aa7.58□□□□□ -1.2
SMARCA4-219ENST00000592604 DMBT1Q9UGM3 2413 aaPredicted RBP7.56□□□□□ -1.2
SMARCA4-219ENST00000592604 LRP1Q07954 4544 aaKnown RBP7.55□□□□□ -1.2
SMARCA4-219ENST00000592604 HSPG2P98160 4391 aa7.55□□□□□ -1.2
SMARCA4-219ENST00000592604 S4R3F8 94 aa7.55□□□□□ -1.2
SMARCA4-219ENST00000592604 XP32Q5T750 250 aa7.52□□□□□ -1.21
SMARCA4-219ENST00000592604 RYR2Q92736 4967 aa7.5□□□□□ -1.21
SMARCA4-219ENST00000592604 A0A0D9SG42 100 aa7.5□□□□□ -1.21
SMARCA4-219ENST00000592604 TPRXLQ17RH7 258 aa7.48□□□□□ -1.21
SMARCA4-219ENST00000592604 Q5VSD8 79 aa7.4□□□□□ -1.22
SMARCA4-219ENST00000592604 C10orf95Q9H7T3 257 aa7.4□□□□□ -1.23
SMARCA4-219ENST00000592604 MYCBP2O75592 4640 aa7.38□□□□□ -1.23
SMARCA4-219ENST00000592604 KRTAP12-2P59991 146 aa7.35□□□□□ -1.23
SMARCA4-219ENST00000592604 J3QL48 77 aa7.34□□□□□ -1.24
SMARCA4-219ENST00000592604 KMT2CQ8NEZ4 4911 aaKnown RBP7.33□□□□□ -1.24
SMARCA4-219ENST00000592604 KRTAP12-1P59990 96 aa7.31□□□□□ -1.24
SMARCA4-219ENST00000592604 MT1HL1P0DM35 61 aa7.27□□□□□ -1.25
SMARCA4-219ENST00000592604 RYR1P21817 5038 aa7.27□□□□□ -1.25
SMARCA4-219ENST00000592604 M0QZ58 72 aa7.26□□□□□ -1.25
SMARCA4-219ENST00000592604 KRTAP17-1Q9BYP8 105 aa7.24□□□□□ -1.25
SMARCA4-219ENST00000592604 LPAP08519 4548 aa7.18□□□□□ -1.26
SMARCA4-219ENST00000592604 LRP2P98164 4655 aa7.15□□□□□ -1.26
SMARCA4-219ENST00000592604 RYR3Q15413 4870 aa7.13□□□□□ -1.27
SMARCA4-219ENST00000592604 KIAA1109Q2LD37 5005 aa7.06□□□□□ -1.28
SMARCA4-219ENST00000592604 R4GN34 69 aa7□□□□□ -1.29
SMARCA4-219ENST00000592604 CAMK2N1Q7Z7J9 78 aa6.93□□□□□ -1.3
SMARCA4-219ENST00000592604 EPPK1P58107 5090 aaKnown RBP6.92□□□□□ -1.3
SMARCA4-219ENST00000592604 MUC17Q685J3 4493 aa6.9□□□□□ -1.31
SMARCA4-219ENST00000592604 LORP23490 312 aaPredicted RBP6.89□□□□□ -1.31
SMARCA4-219ENST00000592604 ABCA13Q86UQ4 5058 aa6.88□□□□□ -1.31
SMARCA4-219ENST00000592604 PLAC4Q8WY50 150 aa6.86□□□□□ -1.31
SMARCA4-219ENST00000592604 KRTAP4-1Q9BYQ7 146 aa6.81□□□□□ -1.32
SMARCA4-219ENST00000592604 KRTAP4-5Q9BYR2 181 aa6.78□□□□□ -1.32
SMARCA4-219ENST00000592604 KRTAP19-2Q3LHN2 52 aa6.77□□□□□ -1.33
SMARCA4-219ENST00000592604 PP632Q6XCG6 107 aa6.7□□□□□ -1.34
SMARCA4-219ENST00000592604 BIRC6Q9NR09 4857 aa6.63□□□□□ -1.35
SMARCA4-219ENST00000592604 PRO2289Q9P1D8 64 aa6.63□□□□□ -1.35
SMARCA4-219ENST00000592604 FLGP20930 4061 aaPredicted RBP6.58□□□□□ -1.36
SMARCA4-219ENST00000592604 PCLOQ9Y6V0 5065 aa6.51□□□□□ -1.37
SMARCA4-219ENST00000592604 KRTAP23-1A1A580 65 aa6.49□□□□□ -1.37
SMARCA4-219ENST00000592604 HERC2O95714 4834 aa6.48□□□□□ -1.37
SMARCA4-219ENST00000592604 HERC1Q15751 4861 aa6.48□□□□□ -1.37
SMARCA4-219ENST00000592604 TNP1P09430 55 aa6.46□□□□□ -1.38
SMARCA4-219ENST00000592604 MUC2Q02817 5179 aa6.38□□□□□ -1.39
SMARCA4-219ENST00000592604 SPRR5A0A1B0GTR4 108 aa6.34□□□□□ -1.39
SMARCA4-219ENST00000592604 SPRR2GQ9BYE4 73 aa6.28□□□□□ -1.4
SMARCA4-219ENST00000592604 LCE2CQ5TA81 110 aa6.26□□□□□ -1.41
SMARCA4-219ENST00000592604 KRTAP19-1Q8IUB9 90 aa6.22□□□□□ -1.41
SMARCA4-219ENST00000592604 INE1O15225 51 aa6.22□□□□□ -1.41
SMARCA4-219ENST00000592604 HMCN2Q8NDA2 5059 aa6.16□□□□□ -1.42
SMARCA4-219ENST00000592604 FAT4Q6V0I7 4981 aa6.09□□□□□ -1.43
SMARCA4-219ENST00000592604 LCE3AQ5TA76 89 aa6.09□□□□□ -1.44
SMARCA4-219ENST00000592604 MT1HP80294 61 aa6.05□□□□□ -1.44
SMARCA4-219ENST00000592604 M0R2T5 61 aa6.05□□□□□ -1.44
SMARCA4-219ENST00000592604 MT2AP02795 61 aa6.02□□□□□ -1.45
SMARCA4-219ENST00000592604 MT1FP04733 61 aa6.02□□□□□ -1.45
SMARCA4-219ENST00000592604 KRTAP10-10P60014 251 aa5.99□□□□□ -1.45
SMARCA4-219ENST00000592604 KRTAP19-8Q3LI54 63 aa5.98□□□□□ -1.45
SMARCA4-219ENST00000592604 KRTAP8-1Q8IUC2 63 aa5.98□□□□□ -1.45
SMARCA4-219ENST00000592604 UBR4Q5T4S7 5183 aa5.97□□□□□ -1.45
SMARCA4-219ENST00000592604 KRTAP9-8Q9BYQ0 159 aa5.97□□□□□ -1.45
SMARCA4-219ENST00000592604 RNF213Q63HN8 5207 aa5.9□□□□□ -1.46
SMARCA4-219ENST00000592604 KRTAP10-5P60370 271 aa5.89□□□□□ -1.47
SMARCA4-219ENST00000592604 MT1BP07438 61 aa5.88□□□□□ -1.47
SMARCA4-219ENST00000592604 MT1XP80297 61 aa5.87□□□□□ -1.47
SMARCA4-219ENST00000592604 KRTAP12-3P60328 96 aa5.8□□□□□ -1.48
SMARCA4-219ENST00000592604 KRTAP10-12P60413 245 aa5.79□□□□□ -1.48
SMARCA4-219ENST00000592604 KRTAP9-3Q9BYQ3 159 aa5.71□□□□□ -1.5
SMARCA4-219ENST00000592604 KRTAP10-7P60409 375 aaPredicted RBP5.7□□□□□ -1.5
SMARCA4-219ENST00000592604 KRTAP19-5Q3LI72 72 aa5.5□□□□□ -1.53
SMARCA4-219ENST00000592604 LCE3CQ5T5A8 94 aa5.48□□□□□ -1.53
SMARCA4-219ENST00000592604 LCE2BO14633 110 aa5.44□□□□□ -1.54
SMARCA4-219ENST00000592604 KRTAP4-8A0A0G2JLE6 195 aa5.3□□□□□ -1.56
SMARCA4-219ENST00000592604 KRTAP4-8Q9BYQ9 185 aa5.3□□□□□ -1.56
SMARCA4-219ENST00000592604 KRTAP9-6A8MVA2 160 aa5.29□□□□□ -1.56
SMARCA4-219ENST00000592604 FSIP2Q5CZC0 6907 aa5.29□□□□□ -1.56
SMARCA4-219ENST00000592604 KMT2DO14686 5537 aa5.26□□□□□ -1.57
SMARCA4-219ENST00000592604 KRTAP19-7Q3SYF9 63 aa5.24□□□□□ -1.57
SMARCA4-219ENST00000592604 LCE2AQ5TA79 106 aaPredicted RBP5.22□□□□□ -1.57
SMARCA4-219ENST00000592604 KRTAP19-4Q3LI73 84 aa5.21□□□□□ -1.57
SMARCA4-219ENST00000592604 USH2AO75445 5202 aa5.21□□□□□ -1.58
SMARCA4-219ENST00000592604 KRTAP2-3P0C7H8 128 aa5.2□□□□□ -1.58
SMARCA4-219ENST00000592604 KRTAP2-4Q9BYR9 128 aa5.2□□□□□ -1.58
SMARCA4-219ENST00000592604 KRTAP2-1Q9BYU5 128 aa5.2□□□□□ -1.58
SMARCA4-219ENST00000592604 KRTAP4-7Q9BYR0 210 aa5.13□□□□□ -1.59
SMARCA4-219ENST00000592604 MT1LQ93083 61 aa5.09□□□□□ -1.59
SMARCA4-219ENST00000592604 MT1EP04732 61 aa5.07□□□□□ -1.6
SMARCA4-219ENST00000592604 KRTAP9-2Q9BYQ4 174 aa5.03□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 79.2 ms