RNA–Protein interactions for RNA: ENST00000583344.1

SMCHD1-208, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 2

Gene SMCHD1, Length 738 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-208ENST00000583344 DNAH9Q9NYC9 4486 aa2.1□□□□□ -2.07
SMCHD1-208ENST00000583344 RYR2Q92736 4967 aa2.1□□□□□ -2.07
SMCHD1-208ENST00000583344 PRKDCP78527 4128 aaKnown RBP2.1□□□□□ -2.07
SMCHD1-208ENST00000583344 ACYP2P14621 99 aa2.09□□□□□ -2.07
SMCHD1-208ENST00000583344 Q6ZRN7 208 aaPredicted RBP2.09□□□□□ -2.07
SMCHD1-208ENST00000583344 DNAH3Q8TD57 4116 aa2.09□□□□□ -2.08
SMCHD1-208ENST00000583344 NBDYA0A0U1RRE5 68 aa2.08□□□□□ -2.08
SMCHD1-208ENST00000583344 PCOTHQ58A44 107 aa2.08□□□□□ -2.08
SMCHD1-208ENST00000583344 SPAG11AQ6PDA7 123 aa2.08□□□□□ -2.08
SMCHD1-208ENST00000583344 SSBP3-AS1Q7Z2R9 100 aa2.08□□□□□ -2.08
SMCHD1-208ENST00000583344 SPACA4Q8TDM5 124 aa2.08□□□□□ -2.08
SMCHD1-208ENST00000583344 TENM2Q9NT68 2774 aa2.08□□□□□ -2.08
SMCHD1-208ENST00000583344 HUWE1Q7Z6Z7 4374 aaKnown RBP2.07□□□□□ -2.08
SMCHD1-208ENST00000583344 UBE2DNLQ8IWF7 75 aa2.07□□□□□ -2.08
SMCHD1-208ENST00000583344 SPTSSBQ8NFR3 76 aa2.07□□□□□ -2.08
SMCHD1-208ENST00000583344 DYNC2H1Q8NCM8 4307 aaKnown RBP2.07□□□□□ -2.08
SMCHD1-208ENST00000583344 PCLOQ9Y6V0 5065 aa2.07□□□□□ -2.08
SMCHD1-208ENST00000583344 CMYA5Q8N3K9 4069 aa2.06□□□□□ -2.08
SMCHD1-208ENST00000583344 SPINK7P58062 85 aa2.06□□□□□ -2.08
SMCHD1-208ENST00000583344 SPATA8Q6RVD6 105 aa2.06□□□□□ -2.08
SMCHD1-208ENST00000583344 C7orf65Q6ZTY9 151 aa2.06□□□□□ -2.08
SMCHD1-208ENST00000583344 PSORS1C2Q9UIG4 136 aa2.06□□□□□ -2.08
SMCHD1-208ENST00000583344 DNAH10Q8IVF4 4471 aa2.06□□□□□ -2.08
SMCHD1-208ENST00000583344 A0A087WTM6 91 aa2.05□□□□□ -2.08
SMCHD1-208ENST00000583344 DMAC1Q96GE9 116 aa2.05□□□□□ -2.08
SMCHD1-208ENST00000583344 HERC2O95714 4834 aa2.05□□□□□ -2.08
SMCHD1-208ENST00000583344 ALMS1Q8TCU4 4167 aa2.04□□□□□ -2.08
SMCHD1-208ENST00000583344 NUPR2A6NF83 97 aa2.04□□□□□ -2.08
SMCHD1-208ENST00000583344 KRTAP25-1Q3LHN0 102 aa2.04□□□□□ -2.08
SMCHD1-208ENST00000583344 TENM3Q9P273 2699 aa2.04□□□□□ -2.08
SMCHD1-208ENST00000583344 DNAH8Q96JB1 4490 aa2.04□□□□□ -2.08
SMCHD1-208ENST00000583344 A0A1B0GU33 70 aa2.03□□□□□ -2.08
SMCHD1-208ENST00000583344 R4GN34 69 aa2.03□□□□□ -2.08
SMCHD1-208ENST00000583344 LYSTQ99698 3801 aa2.03□□□□□ -2.08
SMCHD1-208ENST00000583344 COL7A1Q02388 2944 aa2.02□□□□□ -2.09
SMCHD1-208ENST00000583344 A0A1B0GU69 56 aa2.01□□□□□ -2.09
SMCHD1-208ENST00000583344 UQCR11O14957 56 aa2.01□□□□□ -2.09
SMCHD1-208ENST00000583344 DNAH17Q9UFH2 4485 aa2.01□□□□□ -2.09
SMCHD1-208ENST00000583344 VPS13DQ5THJ4 4388 aa2.01□□□□□ -2.09
SMCHD1-208ENST00000583344 SRRM2Q9UQ35 2752 aaKnown RBP2□□□□□ -2.09
SMCHD1-208ENST00000583344 PLECQ15149 4684 aaKnown RBP2□□□□□ -2.09
SMCHD1-208ENST00000583344 LINC01554Q52M75 96 aa2□□□□□ -2.09
SMCHD1-208ENST00000583344 SPINK6Q6UWN8 80 aa2□□□□□ -2.09
SMCHD1-208ENST00000583344 RYR1P21817 5038 aa2□□□□□ -2.09
SMCHD1-208ENST00000583344 MIR22HGQ0VDD5 57 aa1.99□□□□□ -2.09
SMCHD1-208ENST00000583344 SACSQ9NZJ4 4579 aa1.99□□□□□ -2.09
SMCHD1-208ENST00000583344 LY6G6CO95867 125 aa1.98□□□□□ -2.09
SMCHD1-208ENST00000583344 KRTAP13-2Q52LG2 175 aa1.98□□□□□ -2.09
SMCHD1-208ENST00000583344 C1orf134Q5TEV5 83 aa1.98□□□□□ -2.09
SMCHD1-208ENST00000583344 ABCA13Q86UQ4 5058 aa1.98□□□□□ -2.09
SMCHD1-208ENST00000583344 DNAH2Q9P225 4427 aa1.97□□□□□ -2.09
SMCHD1-208ENST00000583344 CSMD3Q7Z407 3707 aa1.97□□□□□ -2.09
SMCHD1-208ENST00000583344 RETNLBQ9BQ08 111 aa1.97□□□□□ -2.09
SMCHD1-208ENST00000583344 DNAH7Q8WXX0 4024 aa1.97□□□□□ -2.09
SMCHD1-208ENST00000583344 RPS29P62273 56 aaKnown RBP1.96□□□□□ -2.1
SMCHD1-208ENST00000583344 Q6ZSA8 131 aa1.96□□□□□ -2.1
SMCHD1-208ENST00000583344 KIAA1109Q2LD37 5005 aa1.96□□□□□ -2.1
SMCHD1-208ENST00000583344 SPINK1P00995 79 aa1.95□□□□□ -2.1
SMCHD1-208ENST00000583344 KRTAP12-4P60329 112 aa1.95□□□□□ -2.1
SMCHD1-208ENST00000583344 STARD9Q9P2P6 4700 aa1.95□□□□□ -2.1
SMCHD1-208ENST00000583344 HECTD4Q9Y4D8 3996 aa1.94□□□□□ -2.1
SMCHD1-208ENST00000583344 UBR4Q5T4S7 5183 aa1.94□□□□□ -2.1
SMCHD1-208ENST00000583344 FRAS1Q86XX4 4008 aa1.93□□□□□ -2.1
SMCHD1-208ENST00000583344 STAB2Q8WWQ8 2551 aa1.93□□□□□ -2.1
SMCHD1-208ENST00000583344 DNAH11Q96DT5 4516 aa1.92□□□□□ -2.1
SMCHD1-208ENST00000583344 KRTAP12-3P60328 96 aa1.92□□□□□ -2.1
SMCHD1-208ENST00000583344 CSAG1Q6PB30 78 aa1.92□□□□□ -2.1
SMCHD1-208ENST00000583344 LRP1BQ9NZR2 4599 aa1.92□□□□□ -2.1
SMCHD1-208ENST00000583344 C20orf166-AS1Q96NR2 134 aa1.91□□□□□ -2.1
SMCHD1-208ENST00000583344 CRCT1Q9UGL9 99 aa1.91□□□□□ -2.1
SMCHD1-208ENST00000583344 DNAH5Q8TE73 4624 aa1.9□□□□□ -2.1
SMCHD1-208ENST00000583344 H0YAA0 97 aa1.9□□□□□ -2.11
SMCHD1-208ENST00000583344 LINC00304Q8N9R0 145 aa1.9□□□□□ -2.11
SMCHD1-208ENST00000583344 PKD1P98161 4303 aa1.89□□□□□ -2.11
SMCHD1-208ENST00000583344 H1FX-AS1Q4G0G2 97 aa1.89□□□□□ -2.11
SMCHD1-208ENST00000583344 HERC1Q15751 4861 aa1.88□□□□□ -2.11
SMCHD1-208ENST00000583344 DNAH6Q9C0G6 4158 aa1.88□□□□□ -2.11
SMCHD1-208ENST00000583344 COX6B2Q6YFQ2 88 aa1.87□□□□□ -2.11
SMCHD1-208ENST00000583344 KMT2AQ03164 3969 aa1.86□□□□□ -2.11
SMCHD1-208ENST00000583344 KRTAP10-4P60372 401 aaPredicted RBP1.84□□□□□ -2.11
SMCHD1-208ENST00000583344 ROMO1P60602 79 aa1.84□□□□□ -2.11
SMCHD1-208ENST00000583344 PRO2289Q9P1D8 64 aa1.84□□□□□ -2.11
SMCHD1-208ENST00000583344 FAT2Q9NYQ8 4349 aa1.83□□□□□ -2.12
SMCHD1-208ENST00000583344 RPL37P61927 97 aaKnown RBP1.83□□□□□ -2.12
SMCHD1-208ENST00000583344 DYNC1H1Q14204 4646 aaKnown RBP1.82□□□□□ -2.12
SMCHD1-208ENST00000583344 C9orf92A6NGG3 77 aa1.82□□□□□ -2.12
SMCHD1-208ENST00000583344 KRTAP4-1Q9BYQ7 146 aa1.82□□□□□ -2.12
SMCHD1-208ENST00000583344 HMCN1Q96RW7 5635 aa1.82□□□□□ -2.12
SMCHD1-208ENST00000583344 VPS13BQ7Z7G8 4022 aa1.81□□□□□ -2.12
SMCHD1-208ENST00000583344 DMBT1Q9UGM3 2413 aaPredicted RBP1.8□□□□□ -2.12
SMCHD1-208ENST00000583344 APOBP04114 4563 aaKnown RBP1.8□□□□□ -2.12
SMCHD1-208ENST00000583344 P0C880 135 aa1.8□□□□□ -2.12
SMCHD1-208ENST00000583344 FAT3Q8TDW7 4589 aa1.79□□□□□ -2.12
SMCHD1-208ENST00000583344 Q5VSD8 79 aa1.79□□□□□ -2.12
SMCHD1-208ENST00000583344 PKHD1L1Q86WI1 4243 aa1.79□□□□□ -2.12
SMCHD1-208ENST00000583344 SMR3BP02814 79 aaPredicted RBP1.78□□□□□ -2.12
SMCHD1-208ENST00000583344 TPRXLQ17RH7 258 aa1.78□□□□□ -2.12
SMCHD1-208ENST00000583344 KRTAP13-4Q3LI77 160 aa1.78□□□□□ -2.12
SMCHD1-208ENST00000583344 MYCBP2O75592 4640 aa1.78□□□□□ -2.12
SMCHD1-208ENST00000583344 HSPG2P98160 4391 aa1.78□□□□□ -2.12
Retrieved 100 of 20,778 RNA–protein pairs in 8.8 ms