RNA–Protein interactions for RNA: ENST00000577300.1

SMCHD1-202, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 3

Gene SMCHD1, Length 506 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-202ENST00000577300 WDFY4Q6ZS81 3184 aa0.83□□□□□ -2.28
SMCHD1-202ENST00000577300 HECTD4Q9Y4D8 3996 aa0.83□□□□□ -2.28
SMCHD1-202ENST00000577300 MAP1AP78559 2803 aaPredicted RBP0.83□□□□□ -2.28
SMCHD1-202ENST00000577300 RPS29P62273 56 aaKnown RBP0.83□□□□□ -2.28
SMCHD1-202ENST00000577300 SVEP1Q4LDE5 3571 aa0.83□□□□□ -2.28
SMCHD1-202ENST00000577300 SRCAPQ6ZRS2 3230 aa0.83□□□□□ -2.28
SMCHD1-202ENST00000577300 FRYQ5TBA9 3013 aa0.83□□□□□ -2.28
SMCHD1-202ENST00000577300 ATMQ13315 3056 aa0.83□□□□□ -2.28
SMCHD1-202ENST00000577300 TNXBP22105 4242 aa0.82□□□□□ -2.28
SMCHD1-202ENST00000577300 NOTCH1P46531 2555 aa0.82□□□□□ -2.28
SMCHD1-202ENST00000577300 USP34Q70CQ2 3546 aa0.82□□□□□ -2.28
SMCHD1-202ENST00000577300 SMR3BP02814 79 aaPredicted RBP0.82□□□□□ -2.28
SMCHD1-202ENST00000577300 CUBNO60494 3623 aa0.82□□□□□ -2.28
SMCHD1-202ENST00000577300 SPEGQ15772 3267 aa0.82□□□□□ -2.28
SMCHD1-202ENST00000577300 ATRQ13535 2644 aa0.82□□□□□ -2.28
SMCHD1-202ENST00000577300 UTRNP46939 3433 aa0.82□□□□□ -2.28
SMCHD1-202ENST00000577300 SPG11Q96JI7 2443 aa0.81□□□□□ -2.28
SMCHD1-202ENST00000577300 USP9YO00507 2555 aaPredicted RBP0.81□□□□□ -2.28
SMCHD1-202ENST00000577300 STAB1Q9NY15 2570 aa0.81□□□□□ -2.28
SMCHD1-202ENST00000577300 LRBAP50851 2863 aa0.81□□□□□ -2.28
SMCHD1-202ENST00000577300 PRM1P04553 51 aa0.81□□□□□ -2.28
SMCHD1-202ENST00000577300 CELSR3Q9NYQ7 3312 aa0.81□□□□□ -2.28
SMCHD1-202ENST00000577300 RIF1Q5UIP0 2472 aaKnown RBP0.81□□□□□ -2.28
SMCHD1-202ENST00000577300 COL12A1Q99715 3063 aa0.81□□□□□ -2.28
SMCHD1-202ENST00000577300 VPS13AQ96RL7 3174 aa0.81□□□□□ -2.28
SMCHD1-202ENST00000577300 PKHD1P08F94 4074 aa0.8□□□□□ -2.28
SMCHD1-202ENST00000577300 POLQO75417 2590 aa0.8□□□□□ -2.28
SMCHD1-202ENST00000577300 SONP18583 2426 aaKnown RBP0.8□□□□□ -2.28
SMCHD1-202ENST00000577300 ANKHD1Q8IWZ3 2542 aaKnown RBP0.8□□□□□ -2.28
SMCHD1-202ENST00000577300 NCOR2Q9Y618 2525 aa0.8□□□□□ -2.28
SMCHD1-202ENST00000577300 LRP1Q07954 4544 aaKnown RBP0.8□□□□□ -2.28
SMCHD1-202ENST00000577300 LRRK2Q5S007 2527 aa0.79□□□□□ -2.28
SMCHD1-202ENST00000577300 USP24Q9UPU5 2620 aa0.79□□□□□ -2.28
SMCHD1-202ENST00000577300 GOLGB1Q14789 3259 aaKnown RBP0.79□□□□□ -2.28
SMCHD1-202ENST00000577300 DCHS1Q96JQ0 3298 aa0.79□□□□□ -2.28
SMCHD1-202ENST00000577300 FBN2P35556 2912 aa0.78□□□□□ -2.28
SMCHD1-202ENST00000577300 KALRNO60229 2985 aa0.78□□□□□ -2.28
SMCHD1-202ENST00000577300 DMXL2Q8TDJ6 3036 aa0.78□□□□□ -2.28
SMCHD1-202ENST00000577300 DYNC1H1Q14204 4646 aaKnown RBP0.77□□□□□ -2.29
SMCHD1-202ENST00000577300 FAM186AA6NE01 2351 aa0.77□□□□□ -2.29
SMCHD1-202ENST00000577300 EPG5Q9HCE0 2579 aa0.77□□□□□ -2.29
SMCHD1-202ENST00000577300 SETXQ7Z333 2677 aaKnown RBP0.77□□□□□ -2.29
SMCHD1-202ENST00000577300 NIPBLQ6KC79 2804 aaeCLIP0.77□□□□□ -2.29
SMCHD1-202ENST00000577300 ZANQ9Y493 2812 aa0.77□□□□□ -2.29
SMCHD1-202ENST00000577300 TGP01266 2768 aa0.76□□□□□ -2.29
SMCHD1-202ENST00000577300 FAT1Q14517 4588 aa0.76□□□□□ -2.29
SMCHD1-202ENST00000577300 KRTAP19-5Q3LI72 72 aa0.76□□□□□ -2.29
SMCHD1-202ENST00000577300 CSMD2Q7Z408 3487 aa0.76□□□□□ -2.29
SMCHD1-202ENST00000577300 FLNCQ14315 2725 aa0.76□□□□□ -2.29
SMCHD1-202ENST00000577300 MUC17Q685J3 4493 aa0.76□□□□□ -2.29
SMCHD1-202ENST00000577300 BDP1A6H8Y1 2624 aa0.76□□□□□ -2.29
SMCHD1-202ENST00000577300 CACNA1AO00555 2505 aa0.76□□□□□ -2.29
SMCHD1-202ENST00000577300 ACANP16112 2415 aa0.76□□□□□ -2.29
SMCHD1-202ENST00000577300 CENPFP49454 3210 aa0.76□□□□□ -2.29
SMCHD1-202ENST00000577300 LPAP08519 4548 aa0.75□□□□□ -2.29
SMCHD1-202ENST00000577300 VPS13CQ709C8 3753 aa0.75□□□□□ -2.29
SMCHD1-202ENST00000577300 APCP25054 2843 aa0.74□□□□□ -2.29
SMCHD1-202ENST00000577300 PCNTO95613 3336 aa0.74□□□□□ -2.29
SMCHD1-202ENST00000577300 FREM2Q5SZK8 3169 aa0.74□□□□□ -2.29
SMCHD1-202ENST00000577300 TEX15Q9BXT5 2789 aa0.74□□□□□ -2.29
SMCHD1-202ENST00000577300 EP400Q96L91 3159 aa0.74□□□□□ -2.29
SMCHD1-202ENST00000577300 GCN1Q92616 2671 aaKnown RBP0.74□□□□□ -2.29
SMCHD1-202ENST00000577300 CHD8Q9HCK8 2581 aa0.74□□□□□ -2.29
SMCHD1-202ENST00000577300 ASPMQ8IZT6 3477 aa0.73□□□□□ -2.29
SMCHD1-202ENST00000577300 AHNAK2Q8IVF2 5795 aa0.73□□□□□ -2.29
SMCHD1-202ENST00000577300 UTP20O75691 2785 aaKnown RBP0.73□□□□□ -2.29
SMCHD1-202ENST00000577300 NBEAL2Q6ZNJ1 2754 aa0.73□□□□□ -2.29
SMCHD1-202ENST00000577300 TACC2O95359 2948 aa0.72□□□□□ -2.29
SMCHD1-202ENST00000577300 CFAP46Q8IYW2 2715 aa0.72□□□□□ -2.29
SMCHD1-202ENST00000577300 XIRP2A4UGR9 3374 aa0.72□□□□□ -2.29
SMCHD1-202ENST00000577300 LAMA1P25391 3075 aa0.72□□□□□ -2.29
SMCHD1-202ENST00000577300 STAB2Q8WWQ8 2551 aa0.71□□□□□ -2.3
SMCHD1-202ENST00000577300 VCANP13611 3396 aa0.71□□□□□ -2.3
SMCHD1-202ENST00000577300 LAMA3Q16787 3333 aa0.71□□□□□ -2.3
SMCHD1-202ENST00000577300 PKD1L1Q8TDX9 2849 aa0.71□□□□□ -2.3
SMCHD1-202ENST00000577300 MXRA5Q9NR99 2828 aa0.71□□□□□ -2.3
SMCHD1-202ENST00000577300 SYNE1Q8NF91 8797 aaKnown RBP0.71□□□□□ -2.3
SMCHD1-202ENST00000577300 ITPR2Q14571 2701 aa0.71□□□□□ -2.3
SMCHD1-202ENST00000577300 LAMA2P24043 3122 aaKnown RBP0.71□□□□□ -2.3
SMCHD1-202ENST00000577300 SPTAN1Q13813 2472 aaKnown RBP0.71□□□□□ -2.3
SMCHD1-202ENST00000577300 MYO15AQ9UKN7 3530 aa0.71□□□□□ -2.3
SMCHD1-202ENST00000577300 USP9XQ93008 2570 aaPredicted RBP0.7□□□□□ -2.3
SMCHD1-202ENST00000577300 HIVEP1P15822 2718 aa0.7□□□□□ -2.3
SMCHD1-202ENST00000577300 WDFY3Q8IZQ1 3526 aa0.7□□□□□ -2.3
SMCHD1-202ENST00000577300 NSD1Q96L73 2696 aaPredicted RBP0.7□□□□□ -2.3
SMCHD1-202ENST00000577300 UNC79Q9P2D8 2635 aa0.7□□□□□ -2.3
SMCHD1-202ENST00000577300 MUC3AQ02505 3323 aa0.7□□□□□ -2.3
SMCHD1-202ENST00000577300 BRCA2P51587 3418 aa0.69□□□□□ -2.3
SMCHD1-202ENST00000577300 MTORP42345 2549 aa0.69□□□□□ -2.3
SMCHD1-202ENST00000577300 MT1AP04731 61 aa0.69□□□□□ -2.3
SMCHD1-202ENST00000577300 TEP1Q99973 2627 aaKnown RBP0.69□□□□□ -2.3
SMCHD1-202ENST00000577300 ACACBO00763 2458 aa0.69□□□□□ -2.3
SMCHD1-202ENST00000577300 DOPEY1Q5JWR5 2465 aa0.69□□□□□ -2.3
SMCHD1-202ENST00000577300 FLNAP21333 2647 aaKnown RBP0.68□□□□□ -2.3
SMCHD1-202ENST00000577300 CENPEQ02224 2701 aa0.68□□□□□ -2.3
SMCHD1-202ENST00000577300 KRTAP19-3Q7Z4W3 81 aa0.68□□□□□ -2.3
SMCHD1-202ENST00000577300 UNC80Q8N2C7 3258 aa0.68□□□□□ -2.3
SMCHD1-202ENST00000577300 DNAH14Q0VDD8 3507 aa0.67□□□□□ -2.3
SMCHD1-202ENST00000577300 KRTAP6-2Q3LI66 62 aa0.67□□□□□ -2.3
SMCHD1-202ENST00000577300 LOC400499M0QZD8 3231 aa0.67□□□□□ -2.3
Retrieved 100 of 20,778 RNA–protein pairs in 55.7 ms