RNA–Protein interactions for RNA: ENST00000574022.1

CHD3-217, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 103 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-217ENST00000574022 COL6A5A8TX70 2615 aa-0.15□□□□□ -2.43
CHD3-217ENST00000574022 KRTAP19-5Q3LI72 72 aa-0.15□□□□□ -2.43
CHD3-217ENST00000574022 KRTAP8-1Q8IUC2 63 aa-0.15□□□□□ -2.43
CHD3-217ENST00000574022 PKHD1L1Q86WI1 4243 aa-0.15□□□□□ -2.43
CHD3-217ENST00000574022 TLN2Q9Y4G6 2542 aa-0.15□□□□□ -2.43
CHD3-217ENST00000574022 SPENQ96T58 3664 aaKnown RBP-0.15□□□□□ -2.43
CHD3-217ENST00000574022 DNAH3Q8TD57 4116 aa-0.15□□□□□ -2.43
CHD3-217ENST00000574022 AHNAKQ09666 5890 aaKnown RBP-0.16□□□□□ -2.43
CHD3-217ENST00000574022 POLR2KP53803 58 aaKnown RBP-0.16□□□□□ -2.44
CHD3-217ENST00000574022 DEFB1P60022 68 aa-0.16□□□□□ -2.44
CHD3-217ENST00000574022 APOBP04114 4563 aaKnown RBP-0.17□□□□□ -2.44
CHD3-217ENST00000574022 PCLOQ9Y6V0 5065 aa-0.17□□□□□ -2.44
CHD3-217ENST00000574022 ATP7AQ04656 1500 aa-0.18□□□□□ -2.44
CHD3-217ENST00000574022 CELSR3Q9NYQ7 3312 aa-0.18□□□□□ -2.44
CHD3-217ENST00000574022 NBPF19A0A087WUL8 3843 aa-0.18□□□□□ -2.44
CHD3-217ENST00000574022 COL12A1Q99715 3063 aa-0.18□□□□□ -2.44
CHD3-217ENST00000574022 ITPR1Q14643 2758 aa-0.18□□□□□ -2.44
CHD3-217ENST00000574022 SMR3BP02814 79 aaPredicted RBP-0.18□□□□□ -2.44
CHD3-217ENST00000574022 SPART-AS1P0CW21 52 aa-0.18□□□□□ -2.44
CHD3-217ENST00000574022 ITPR3Q14573 2671 aa-0.18□□□□□ -2.44
CHD3-217ENST00000574022 HERC1Q15751 4861 aa-0.19□□□□□ -2.44
CHD3-217ENST00000574022 USP9XQ93008 2570 aaPredicted RBP-0.2□□□□□ -2.44
CHD3-217ENST00000574022 MUC12Q9UKN1 5478 aa-0.2□□□□□ -2.44
CHD3-217ENST00000574022 DNAH6Q9C0G6 4158 aa-0.2□□□□□ -2.44
CHD3-217ENST00000574022 KMT2CQ8NEZ4 4911 aaKnown RBP-0.21□□□□□ -2.44
CHD3-217ENST00000574022 USP9YO00507 2555 aaPredicted RBP-0.21□□□□□ -2.44
CHD3-217ENST00000574022 SAMD9LQ8IVG5 1584 aa-0.21□□□□□ -2.44
CHD3-217ENST00000574022 DNAH11Q96DT5 4516 aa-0.21□□□□□ -2.44
CHD3-217ENST00000574022 MT1HP80294 61 aa-0.22□□□□□ -2.44
CHD3-217ENST00000574022 RELNP78509 3460 aa-0.23□□□□□ -2.45
CHD3-217ENST00000574022 FRYQ5TBA9 3013 aa-0.23□□□□□ -2.45
CHD3-217ENST00000574022 FAT1Q14517 4588 aa-0.23□□□□□ -2.45
CHD3-217ENST00000574022 VPS13DQ5THJ4 4388 aa-0.23□□□□□ -2.45
CHD3-217ENST00000574022 DNAH2Q9P225 4427 aa-0.23□□□□□ -2.45
CHD3-217ENST00000574022 C5orf42Q9H799 3197 aa-0.24□□□□□ -2.45
CHD3-217ENST00000574022 SPTBN5Q9NRC6 3674 aaKnown RBP-0.24□□□□□ -2.45
CHD3-217ENST00000574022 STARD9Q9P2P6 4700 aa-0.25□□□□□ -2.45
CHD3-217ENST00000574022 CHD7Q9P2D1 2997 aa-0.26□□□□□ -2.45
CHD3-217ENST00000574022 UBR4Q5T4S7 5183 aa-0.26□□□□□ -2.45
CHD3-217ENST00000574022 TOP2AP11388 1531 aaKnown RBP-0.26□□□□□ -2.45
CHD3-217ENST00000574022 KRTAP20-2Q3LI61 65 aa-0.26□□□□□ -2.45
CHD3-217ENST00000574022 MGAQ8IWI9 3026 aa-0.27□□□□□ -2.45
CHD3-217ENST00000574022 MT4P47944 62 aa-0.27□□□□□ -2.45
CHD3-217ENST00000574022 USH2AO75445 5202 aa-0.27□□□□□ -2.45
CHD3-217ENST00000574022 SPTAN1Q13813 2472 aaKnown RBP-0.27□□□□□ -2.45
CHD3-217ENST00000574022 TEX15Q9BXT5 2789 aa-0.28□□□□□ -2.45
CHD3-217ENST00000574022 MUC17Q685J3 4493 aa-0.28□□□□□ -2.45
CHD3-217ENST00000574022 DYNC2H1Q8NCM8 4307 aaKnown RBP-0.28□□□□□ -2.45
CHD3-217ENST00000574022 DNAH1Q9P2D7 4330 aa-0.28□□□□□ -2.45
CHD3-217ENST00000574022 CRYBG3Q68DQ2 2970 aa-0.29□□□□□ -2.46
CHD3-217ENST00000574022 LEAP2Q969E1 77 aa-0.29□□□□□ -2.46
CHD3-217ENST00000574022 ADGRG4Q8IZF6 3080 aa-0.3□□□□□ -2.46
CHD3-217ENST00000574022 CSMD1Q96PZ7 3565 aa-0.3□□□□□ -2.46
CHD3-217ENST00000574022 DSTQ03001 7570 aaKnown RBP-0.3□□□□□ -2.46
CHD3-217ENST00000574022 MT1EP04732 61 aa-0.31□□□□□ -2.46
CHD3-217ENST00000574022 TOMM7Q9P0U1 55 aa-0.31□□□□□ -2.46
CHD3-217ENST00000574022 ZFHX4Q86UP3 3567 aa-0.31□□□□□ -2.46
CHD3-217ENST00000574022 LAMA3Q16787 3333 aa-0.31□□□□□ -2.46
CHD3-217ENST00000574022 DNAH8Q96JB1 4490 aa-0.31□□□□□ -2.46
CHD3-217ENST00000574022 PLECQ15149 4684 aaKnown RBP-0.32□□□□□ -2.46
CHD3-217ENST00000574022 DNAH7Q8WXX0 4024 aa-0.32□□□□□ -2.46
CHD3-217ENST00000574022 HERC2O95714 4834 aa-0.32□□□□□ -2.46
CHD3-217ENST00000574022 MROH2BQ7Z745 1585 aa-0.32□□□□□ -2.46
CHD3-217ENST00000574022 SRCAPQ6ZRS2 3230 aa-0.33□□□□□ -2.46
CHD3-217ENST00000574022 RPL39P62891 51 aaKnown RBP-0.33□□□□□ -2.46
CHD3-217ENST00000574022 MT1XP80297 61 aa-0.33□□□□□ -2.46
CHD3-217ENST00000574022 LRBAP50851 2863 aa-0.34□□□□□ -2.46
CHD3-217ENST00000574022 MT1LQ93083 61 aa-0.34□□□□□ -2.46
CHD3-217ENST00000574022 DUOX1Q9NRD9 1551 aa-0.34□□□□□ -2.46
CHD3-217ENST00000574022 MYO9AB2RTY4 2548 aa-0.35□□□□□ -2.47
CHD3-217ENST00000574022 DNAH10Q8IVF4 4471 aa-0.35□□□□□ -2.47
CHD3-217ENST00000574022 FSIP2Q5CZC0 6907 aa-0.35□□□□□ -2.47
CHD3-217ENST00000574022 NIPBLQ6KC79 2804 aaeCLIP-0.36□□□□□ -2.47
CHD3-217ENST00000574022 RYR1P21817 5038 aa-0.36□□□□□ -2.47
CHD3-217ENST00000574022 EPPK1P58107 5090 aaKnown RBP-0.36□□□□□ -2.47
CHD3-217ENST00000574022 DEFB136Q30KP8 78 aa-0.37□□□□□ -2.47
CHD3-217ENST00000574022 RPL39LQ96EH5 51 aaKnown RBP-0.37□□□□□ -2.47
CHD3-217ENST00000574022 DOPEY1Q5JWR5 2465 aa-0.37□□□□□ -2.47
CHD3-217ENST00000574022 LAMA2P24043 3122 aaKnown RBP-0.37□□□□□ -2.47
CHD3-217ENST00000574022 CFAP46Q8IYW2 2715 aa-0.37□□□□□ -2.47
CHD3-217ENST00000574022 CMYA5Q8N3K9 4069 aa-0.38□□□□□ -2.47
CHD3-217ENST00000574022 GCC2Q8IWJ2 1684 aa-0.38□□□□□ -2.47
CHD3-217ENST00000574022 DYNC1H1Q14204 4646 aaKnown RBP-0.39□□□□□ -2.47
CHD3-217ENST00000574022 DMXL2Q8TDJ6 3036 aa-0.39□□□□□ -2.47
CHD3-217ENST00000574022 DNHD1Q96M86 4753 aa-0.39□□□□□ -2.47
CHD3-217ENST00000574022 LINC01590Q5TEZ4 76 aa-0.39□□□□□ -2.47
CHD3-217ENST00000574022 GPR98Q8WXG9 6306 aa-0.41□□□□□ -2.47
CHD3-217ENST00000574022 EYSQ5T1H1 3165 aa-0.41□□□□□ -2.48
CHD3-217ENST00000574022 DEFB4AO15263 64 aa-0.41□□□□□ -2.48
CHD3-217ENST00000574022 BIRC6Q9NR09 4857 aa-0.41□□□□□ -2.48
CHD3-217ENST00000574022 DNAH17Q9UFH2 4485 aa-0.42□□□□□ -2.48
CHD3-217ENST00000574022 SYNE2Q8WXH0 6885 aaKnown RBP-0.42□□□□□ -2.48
CHD3-217ENST00000574022 SNRPGP62308 76 aaKnown RBP-0.43□□□□□ -2.48
CHD3-217ENST00000574022 CSMD2Q7Z408 3487 aa-0.43□□□□□ -2.48
CHD3-217ENST00000574022 TLN1Q9Y490 2541 aaKnown RBP-0.43□□□□□ -2.48
CHD3-217ENST00000574022 TRRAPQ9Y4A5 3859 aa-0.44□□□□□ -2.48
CHD3-217ENST00000574022 MACF1Q9UPN3 7388 aaKnown RBP-0.44□□□□□ -2.48
CHD3-217ENST00000574022 CEP295Q9C0D2 2601 aa-0.44□□□□□ -2.48
CHD3-217ENST00000574022 MT1HL1P0DM35 61 aa-0.45□□□□□ -2.48
CHD3-217ENST00000574022 MT1GP13640 62 aa-0.45□□□□□ -2.48
Retrieved 100 of 20,778 RNA–protein pairs in 46 ms